Command line version of PHACTs for many phage genomes?

[Megan Clay]

Hi there,

I have many phage genomes (>8000) and recently saw that Jahn et al. (2021) used PHACTS in a study of 4484 phage genomes. In its current format, it seems that PHACTs will only process one phage genome at a time. I would like to be able to classify all phage genomes that I have assembled. Is there a way to do this? Potentially a command line version? Or a batch function? 

Many thanks, 

Megan.