SUPER-FOCUS Contig-function annotated

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Mario Moreno

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Jan 31, 2017, 1:38:13 PM1/31/17

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Hello, I wonder if SUPER-FOCUS shown the Contigs annotated in each subsystems, because the output files, only shown a general profiles of each category. Is possible do it?....

Mario

Geni

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Jan 31, 2017, 1:44:05 PM1/31/17

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Hi Mario, thanks for using SUPER-FOCUS.

You can save the annotation for each sequencing by setting "-k 1" (check readme here https://github.com/metageni/SUPER-FOCUS).

PS: I would recommend predicting the ORFs in the contigs before running SUPER-FOCUS because for the most part you will have many orfs in a contig, and the program is only going to annotate the ORF with the best hit. You can use ORFm to predict the orfs.