Broken db archive

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Леонид Солнцев

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Nov 12, 2017, 5:32:42 AM11/12/17
to edge-users

Lo, Chien-Chi

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Nov 12, 2017, 10:59:11 PM11/12/17
to Леонид Солнцев, edge-users
Hi, 

Can you check your download file with md5sum: 12cf4a54e1334d1a59aa109219bba9f6. ?

I re-download it from the ftp site. 

Filszie:
51117574368 Nov 12 20:18 edge_dev_HostIndex.tgz.1

$ md5sum edge_dev_HostIndex.tgz.1 
12cf4a54e1334d1a59aa109219bba9f6  edge_dev_HostIndex.tgz.1

And I untar the file. 

$ tar xvzf edge_dev_HostIndex.tgz.1
database/bwa_index/Host/Human_ref_GRCh38_all/
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.amb
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.ann
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.bwt
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.fai
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.pac
database/bwa_index/Host/Human_ref_GRCh38_all/human_ref_GRCh38_all.fa.sa
database/bwa_index/Host/PhiX/
database/bwa_index/Host/PhiX/phiX.fa
database/bwa_index/Host/PhiX/phiX.fa.amb
database/bwa_index/Host/PhiX/phiX.fa.ann
database/bwa_index/Host/PhiX/phiX.fa.bwt
database/bwa_index/Host/PhiX/phiX.fa.fai
database/bwa_index/Host/PhiX/phiX.fa.pac
database/bwa_index/Host/PhiX/phiX.fa.sa
database/bwa_index/Host/RefSeq_Bacteria/
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.amb
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.ann
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.bwt
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.fai
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.pac
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa.sa
database/bwa_index/Host/RefSeq_Bacteria/NCBI_genome_Bacteria.fa
database/bwa_index/Host/RefSeq_Viruses/
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.amb
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.ann
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.bwt
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.fai
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.pac
database/bwa_index/Host/RefSeq_Viruses/NCBI_genome_Viruses.fa.sa
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.amb
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.ann
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.bwt
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.fai
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.pac
database/bwa_index/Host/Invertebrate_Vectors_of_Human_Pathogens/all_vector.fa.sa

Thanks,
Chienchi

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Леонид Солнцев

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Nov 12, 2017, 11:08:01 PM11/12/17
to edge-users
thanks for answer. i'l try to redownload it.

понедельник, 13 ноября 2017 г., 6:59:11 UTC+3 пользователь Lo, Chien-Chi написал:
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