Re: Erroring after loading 1 value set.

[Nagesh Bashyam - Drajer]

Looks like it is an out of memory error.

These are the JAVA settings that we are using ..For your reference 

JAVA_OPTS="$JAVA_OPTS -Xmx5120m -XX:MaxPermSize=1024m”

Please address the issue accordingly

On Aug 27, 2021, at 9:13 AM, texas C <lakme....@gmail.com> wrote:

Can anyone help with this? I am not sure what I need to do at this point. I increased the memory with Set JAVA_OPTS for Tomcat (9) and still did not fix the issue. I dont think all the value sets are loading fully and hence affecting correct vocab validation. Has anyone seen this type of error and resolved it? 

13:58:10,605 INFO  [VocabularyLoadRunner:44] Loading files in : ICD10PCS...

13:58:16,730 INFO  [VocabularyLoadRunner:44] Loading files in : ICD9CM_DX...

13:58:19,563 INFO  [VocabularyLoadRunner:44] Loading files in : ICD9CM_SG...

13:58:19,563 INFO  [VocabularyLoadRunner:44] Loading files in : LOINC...

13:58:19,610 INFO  [LoincLoader:60] Loading latest LOINC CSV / updating indexes

14:00:57,317 INFO  [VocabularyLoadRunner:44] Loading files in : RXNORM...

14:02:47,875 INFO  [VocabularyLoadRunner:44] Loading files in : SNOMED-CT...

14:02:56,391 INFO  [VocabularyLoadRunner:94] Vocabularies loaded...

14:02:56,391 INFO  [VocabularyLoadRunner:99] Loading value sets at: C:\configs_folder\validatorconfiguration\vocabulary\valueset_repository...

14:02:56,453 INFO  [VocabularyLoadRunner:44] Loading files in : VSAC...

14:02:56,453 INFO  [VsacLoader:35] Loading Value Set File: 1.3.6.1.4.1.12009.10.2.5.xlsx

14:03:05,406 WARN  [AnnotationConfigWebApplicationContext:546] Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'vocabularyLoadRunner' defined in org.sitenv.vocabularies.configuration.CodeValidatorApiConfiguration: Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded

14:03:05,422 INFO  [EmbeddedDatabaseFactory:217] Shutting down embedded database: url='jdbc:hsqldb:mem:testdb'

14:03:09,688 ERROR [ContextLoader:353] Context initialization failed

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'vocabularyLoadRunner' defined in org.sitenv.vocabularies.configuration.CodeValidatorApiConfiguration: Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded

at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1578)

at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)

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