Error when i want to generate QQplots

[Diana Duarte]

Dear all, i am using EBseq for multiple conditions with one replicate. The Multitest functions runs ok, but then i try to see the qq plot and this error appears:


Error in model.frame.default(formula = sort(rdpts) ~ sort(QList[[i]][[j]][QList[[i]][[j]] <  :
  invalid type (NULL) for variable 'sort(QList[[i]][[j]][QList[[i]][[j]] < 1 & !is.na(QList[[i]][[j]])])'
In addition: Warning messages:
1: In is.na(QList[[i]][[j]]) :
  is.na() applied to non-(list or vector) of type 'NULL'
2: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL'
3: In is.na(QList[[i]][[j]]) :
  is.na() applied to non-(list or vector) of type 'NULL'
4: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL'

Therefore i do not know what might be wrong if the test function runs... I appreciate your help.

[Diana Duarte]

i tried the function with the same data set using EBseq HMM function, and the plot was generated.

I run the same data with EBseq MultiTest and the error appear with the QQP function... i also tried with the data that comes with the package and the same error appear.

I appreacite your help.

[Shaojun Xie]

Hi Diana, I encounter the same problem. Did you find the problem finally? Thanks.