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jlu...@gmail.com
8/30/22
protein api to UniProt REST API
Dear protein api users, We have developed UniProt REST API to serve our WebSite uniprot.org. https://
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protein api to UniProt REST API
Dear protein api users, We have developed UniProt REST API to serve our WebSite uniprot.org. https://
8/30/22
Xavier Watkins
1/11/22
UniProt programmatic access survey
To ensure that the new website documentation meets your needs, we would like to understand how you
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UniProt programmatic access survey
To ensure that the new website documentation meets your needs, we would like to understand how you
1/11/22
David Figueroa
,
Leonardo Gonzales
2
6/22/21
Proteins EBI API
Hello David Figueroa, Yes, we have an endpoint that will only return entries by feature type. See all
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Proteins EBI API
Hello David Figueroa, Yes, we have an endpoint that will only return entries by feature type. See all
6/22/21
G Qi
2
10/7/20
Forthcoming changes for Antigen, Variation and Proteome API Services
The changes went live now with UniProt 2020.05 data release. Enjoy it. On Thursday, 17 September 2020
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Forthcoming changes for Antigen, Variation and Proteome API Services
The changes went live now with UniProt 2020.05 data release. Enjoy it. On Thursday, 17 September 2020
10/7/20
Tomáš Müller
7/14/20
API result sort
Would be possible to add sorting to API options? Or at least sort the result using score by default
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API result sort
Would be possible to add sorting to API options? Or at least sort the result using score by default
7/14/20
Melanie Schneider
,
Manas Joshi
2
6/16/20
Fast Ensembl gene ID - UniProtID mapping
Hi, You mean mapping ensembl gene id to uniprot id? Have you tried biomart? I use the R package for
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Fast Ensembl gene ID - UniProtID mapping
Hi, You mean mapping ensembl gene id to uniprot id? Have you tried biomart? I use the R package for
6/16/20
G Qi
3/10/20
Planned maintenance to EBI data centre
Hi All From 14:00 today - April 4, the EMBL-EBI data centre will be migrating to a new physical
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Planned maintenance to EBI data centre
Hi All From 14:00 today - April 4, the EMBL-EBI data centre will be migrating to a new physical
3/10/20
Ian Sillitoe
, …
Shadab Ahmad
4
4/11/19
getByCrossReference (pdb:) returns unexpected entry
Great - thanks for the fix and for letting me know. Best, Ian On Thu, 11 Apr 2019 at 18:19, Shadab
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getByCrossReference (pdb:) returns unexpected entry
Great - thanks for the fix and for letting me know. Best, Ian On Thu, 11 Apr 2019 at 18:19, Shadab
4/11/19
Andrew Simmons
2/24/19
Features Service Not Working for Many Accessions
I recently began using the features service of the Proteins REST API, and noticed that most (but not
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Features Service Not Working for Many Accessions
I recently began using the features service of the Proteins REST API, and noticed that most (but not
2/24/19
Wang Juexin
2/14/19
Request to fix Genomic coordinates error in Uniprot protein API
Hi API developers, I found an interesting inconsistency with ensembl API and Uniprot API, and forward
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Request to fix Genomic coordinates error in Uniprot protein API
Hi API developers, I found an interesting inconsistency with ensembl API and Uniprot API, and forward
2/14/19
Rubén Jesús García Hernández
,
Leonardo Gonzales
2
11/28/18
Issue with /proteins?protein=X
Hi Ruben, Thank you for your feedback. I updated the code to allow 100 as suggested, the code change
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Issue with /proteins?protein=X
Hi Ruben, Thank you for your feedback. I updated the code to allow 100 as suggested, the code change
11/28/18
Pavel Sinitcyn
,
Jie Luo
3
7/19/18
Release version of Uniprot
Hi Jie, I mean specific UniProt release version, in general - release-2015_04 or release-2018_05, etc
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Release version of Uniprot
Hi Jie, I mean specific UniProt release version, in general - release-2015_04 or release-2018_05, etc
7/19/18
B
,
Jie Luo
3
7/19/18
Genomic feature coordinates with names and introns
Hi The Note data NR LBD is in xml and json output. We will update our API to add the note to gff
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Genomic feature coordinates with names and introns
Hi The Note data NR LBD is in xml and json output. We will update our API to add the note to gff
7/19/18
francesc...@unitn.it
,
G Qi
6
5/2/18
Limit of requests
Hi Guoying, I stopped sending requests more than 1 hour ago. I'll try using the -1 size. Thank
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Limit of requests
Hi Guoying, I stopped sending requests more than 1 hour ago. I'll try using the -1 size. Thank
5/2/18
Madhubhanie Senadheera
,
Leonardo Gonzales
3
4/6/18
Cannot map protein and position in genomic code
Thank you :) On Thursday, April 5, 2018 at 3:48:06 PM UTC+1, lgonzales wrote: Hello Madhubhanie
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Cannot map protein and position in genomic code
Thank you :) On Thursday, April 5, 2018 at 3:48:06 PM UTC+1, lgonzales wrote: Hello Madhubhanie
4/6/18
Xavier Watkins
, …
Edward Turner
5
9/27/17
Message sent to the mailing list about API issue
Hi Lukas, Great, thanks for the information and we're very glad the issue has been resolved for
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Message sent to the mailing list about API issue
Hi Lukas, Great, thanks for the information and we're very glad the issue has been resolved for
9/27/17
G Qi
8/30/17
New Proteins API release with new UniProt data 2017.08
Please see here for some new features: http://www.ebi.ac.uk/proteins/api/doc/release_notes.html
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New Proteins API release with new UniProt data 2017.08
Please see here for some new features: http://www.ebi.ac.uk/proteins/api/doc/release_notes.html
8/30/17
ajbrene...@dundee.ac.uk
,
Xavier Watkins
2
3/22/17
query flexibility
Hello, and many thanks for your message. This API was initially designed as an "add-on” to
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query flexibility
Hello, and many thanks for your message. This API was initially designed as an "add-on” to
3/22/17