Problem compiling on OSX 10.7.5

[Sam White]

Hi,

To install, I enter the following command in the shell (within the ./ea-ut:

$BINDIR=/usr/bin/ea-utils make install

However, the install exits with the following lines:

g++ -O3 -I.  fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas
/usr/include/c++/4.2.1/bits/stl_pair.h: In instantiation of ‘std::pair<const std::string&, const std::vector<annot, std::allocator<annot> > >’:
tidx/tidx-lib.cpp:34:   instantiated from here
/usr/include/c++/4.2.1/bits/stl_pair.h:84: error: forming reference to reference type ‘const std::string&’
varcall.cpp:33:29: error: gsl/gsl_randist.h: No such file or directory
varcall.cpp: In member function ‘virtual void VarCallVisitor::Visit(PileupSummary&)’:
varcall.cpp:1723: error: ‘gsl_ran_poisson_pdf’ was not declared in this scope
varcall.cpp:1781: error: ‘gsl_ran_poisson_pdf’ was not declared in this scope
make: *** [varcall] Error 1

I only included these lines of the install output because, if I run the make install command a second time, these are the only ouptut lines.

Any suggestions on how to get this to work would be greatly appreciated.

Thanks!

[Erik Aronesty]

you can either 

1. install the gnu scientific library 

or

2. make the tools ou need only (make fast-mcf or make fastq-multx, etc.)