EA Utils

Dear Erik, Thank you so much for writing fastq-multx as it is fantastic and quick for de-multiplexing

I also have a same problem installing ea-utils on MacOS, this is what I got: ````````````````````````

Hey guys, bit of a EAUtils newbie here but from what I can gather I simply had to install, select the

Hi, I am running fastq_multx to demultiplex Illumina files. I have 2 paired-end files:

Hello, I would like to ask how the removal of base pairs below a quality threshold is done. Are all

All, Now that the google code ea-utils repo is read-only, the company formerly known as "

Hi, I am using fastq-multx with the -l flag in a bash script fastq-multx -l $1 $2 $3 -o %.R2.fastq -o

Hello Erik and experienced EA Utils users, I'm puzzled by the behavior of fastq-mcf in the

Hello Zhan, Thanks for helping in this naive problem. -----------------------------------------------

Hi ea-utils team, I'm using fastq-join to stitch 16S reads: V3-V4 region, length ~460 bp.

Hello Jason, Thanks for your reply. Cheers, Sanjeev -------------------------------------------------

Yes that is 100% correct. On Wed, Jul 29, 2015 at 8:33 AM, Luisa B. <luisa.b...@gmail.com>

Both. On Thursday, April 9, 2015 at 10:09:24 AM UTC-4, Wimalanathan Kokulapalan wrote: When using

This is correct, it's a sliding average window. This prevents a single good quality base from

Thank you very much for the explanation Jason! Very sorry for the late reply, I did not check back

I think (ii) should be reverse complement of rev overhang_adapter-rev_primer from end of read 1 On

you can either 1. install the gnu scientific library or 2. make the tools ou need only (make fast-mcf

we have done demux withe dual-barcoded paired end data a lot, just never embedded in the files. you

- the warnings are mostly fine... sizets should be unsigned thats all. - unless you're using

thats a pretty old version, you might want to build from source, or download from here: https://drive

try ruynning autoconf/automake in the sparsehash folder? On Friday, October 24, 2014 at 6:42:42 PM

N's or even X's do work as wildcards, yes. They count as "always mismatch". Then

- tidx isn't necessary for most ofd what people do with ea-utils that's a utility for

I would not use fastq-mcf to trim primer sequences. Primers will be present in their entirety,

Should work fine. I have learned that mcf will not trim the second barcode off of the sequence read,

I think this solution is the best: make sparsehash make Probablly the makefile is not correct for MAC

Hello, I used fastq to join forward and reverse reads from Illumina, below: # Join forward and

Hello, I have been trying to compile this on a Mavericks machine as well, with no success. Did anyone

I see, thanks! :) Britt On Thursday, September 18, 2014 9:20:18 AM UTC-6, Erik Aronesty wrote: Sorry,

Ahhh I see, that makes sense. Thank you so much!!!! :-) Britt On Thursday, September 18, 2014 8:49:36