ExploreDTI

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Alexander Leemans

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Lenore Tahara-Eckl

5/18/20

signal drift correction application to diffusion files

Hello, I wanted to apply the signal drift correction to my diffusion data. I know that this would be

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signal drift correction application to diffusion files

Hello, I wanted to apply the signal drift correction to my diffusion data. I know that this would be

5/18/20

9/4/19

Deformation axes after permutation, longitudinal study, 2 weeks left to submit dissertation

Dear ExploreDTI community, I'm having some ongoing trouble with deciphering the SM/EPI/EC

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Network_analysis

Deformation axes after permutation, longitudinal study, 2 weeks left to submit dissertation

Dear ExploreDTI community, I'm having some ongoing trouble with deciphering the SM/EPI/EC

9/4/19

Sveta Jakobovic, … stijn m3

3/7/18

Pooling DTI data with different gradient schemes

Dear Sveta, Best practice would be to control for the number of gradients used in the sequences. Just

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Pooling DTI data with different gradient schemes

Dear Sveta, Best practice would be to control for the number of gradients used in the sequences. Just

3/7/18

Joselisa Paiva, Alberto De Luca2

1/29/18

Signal Drift correction on B-val=1000

Dear Joselisa, the signal drift correction needs the data to be sorted in the order in which it was

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Signal Drift correction on B-val=1000

Dear Joselisa, the signal drift correction needs the data to be sorted in the order in which it was

1/29/18

Clara, stijn m5

5/10/17

SM/EC/EPI correction squashing image

Dear Stijn, It seems like the problem was the voxel sizes. In the "Used Flip/Permute dimensions

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SM/EC/EPI correction squashing image

Dear Stijn, It seems like the problem was the voxel sizes. In the "Used Flip/Permute dimensions

5/10/17

ds...@bnac.net, stijn m3

2/21/17

elastix transformix error in EPI correction in Linux version.. needs to download them

Dear ?, Could you please specify to which thread you refer to? Both elastix and transformix scripts

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elastix transformix error in EPI correction in Linux version.. needs to download them

Dear ?, Could you please specify to which thread you refer to? Both elastix and transformix scripts

2/21/17

Ehsan Misaghi, Sjoerd Vos2

8/16/16

Correcting for Signal Drift and Gibb's Ringing Effect

Hi Ehsan, 1) I'd say the order you're doing the processing steps in is perfect! Doing signal

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Correcting for Signal Drift and Gibb's Ringing Effect

Hi Ehsan, 1) I'd say the order you're doing the processing steps in is perfect! Doing signal

8/16/16

Ciara, stijn m4

3/16/15

Problem with correct for motion/EC/EPI distortions step

Hi Stijn, Thank you very much for your reply. I checked the tensor orientation in the coronal and

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Problem with correct for motion/EC/EPI distortions step

Hi Stijn, Thank you very much for your reply. I checked the tensor orientation in the coronal and

3/16/15

Efrat Sasson, … Alexander Leemans3

1/6/15

CSD tractography on trafo error

Indeed - saving big variables (> 2 GB) to *.mat files (such as the DWI variable for high-

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CSD tractography on trafo error

Indeed - saving big variables (> 2 GB) to *.mat files (such as the DWI variable for high-

1/6/15

Ehsan Misaghi, … stijn m6

11/21/14

Finding midline

Dear Stijn, Thanks for your answer. We may give this a try or we may continue with this dataset,

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Finding midline

Dear Stijn, Thanks for your answer. We may give this a try or we may continue with this dataset,

11/21/14

Changhong, CPF4

2/6/15

Unexpected Error

I think that I discovered the error, I don't have the 'imfill' command in R2014a Matlab,

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Network_analysis

Unexpected Error

I think that I discovered the error, I don't have the 'imfill' command in R2014a Matlab,

2/6/15

Ehsan Misaghi, … stijn m6

11/10/14

Additional pixels around the brain after motion/eddy current correction in ExploreDTI

Hi Stijn, I just found where to change the parameters for the mask (Settings -> SM/EC/EPI

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Additional pixels around the brain after motion/eddy current correction in ExploreDTI

Hi Stijn, I just found where to change the parameters for the mask (Settings -> SM/EC/EPI

11/10/14

Efrat Sasson, Chantal Tax3

7/13/14

Rotated B matrix after motion correction

Got it, Thanks! בתאריך יום ראשון, 13 ביולי 2014 18:01:32 UTC+3, מאת Chantal Tax: Hi Efrat, Did you

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Rotated B matrix after motion correction

Got it, Thanks! בתאריך יום ראשון, 13 ביולי 2014 18:01:32 UTC+3, מאת Chantal Tax: Hi Efrat, Did you

7/13/14

Paul Wright, Alexander Leemans3

5/27/14

SM/EC/EPI correction: manually specified native mask is flipped

Hi Paul, Although nifti (*.nii) files should make life easy (at least compared to the inextricable

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SM/EC/EPI correction: manually specified native mask is flipped

Hi Paul, Although nifti (*.nii) files should make life easy (at least compared to the inextricable

5/27/14

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