varying gAMPA and gGABAa together

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Wei, Jingjin

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Jun 3, 2019, 5:53:29 PM6/3/19
to DynaSim Users
Hi all,

I have been wondering if it's possible to vary gAMPA and gGABAa together as a set rather than get the combination. 
vary = {
    'E->I', 'gAMPA', [0.3 0.6];
    'I->E', 'gGABAa', [0.3 0.6];
    };
This gives out a combination which include the pairs I want, but is there a way to do [0.3 0.3] and [0.6 0.6]? dsVary2Modifications seems to work well when it comes to population but not namespace like  "source->target". Thanks!

Jingjin

Erik Roberts

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Jun 3, 2019, 9:35:24 PM6/3/19
to Wei, Jingjin, DynaSim Users
Here are the ways to covary pairs and specify sets:
```
% Vary two parameters (run a simulation for all combinations of values)
% vary={'E','(EK,ENa)',[-80 -60]}; % checked
%       This sets modifications:
%           * E_EK, E_ENa = -80
%           * E_EK, E_ENa = -60
% vary={'E','(EK,ENa)',[-80 -60; -85 -65]}; % checked
%       This sets modifications:
%           * E_EK = -80 and E_ENa = -85
%           * E_EK = -60 and E_ENa = -65
% vary={'E','(EK,ENa,Iapp)',[-80 -60; -85 -65; 0 1]}; % checked
%       This sets modifications:
%           * E_EK = -80, E_ENa = -85, Iapp = 0
%           * E_EK = -60, E_ENa = -65, Iapp = 1
% vary={'E','(EK,ENa,Iapp)',[-80 -50 -60; -85 -40 -65; 0 2 1]}; % checked
%       This sets modifications:
%           * E_EK = -80, E_ENa = -85, Iapp = 0
%           * E_EK = -50, E_ENa = -40, Iapp = 2
%           * E_EK = -60, E_ENa = -65, Iapp = 1
%
% vary={'(E,I)','(EK,ENa)',[-80 -60]}; % checked
%       This sets modifications:
%           * E_EK, E_ENa, I_EK, I_ENa = -80
%           * E_EK, E_ENa, I_EK, I_ENa = -60
% vary={'(E,I)','(EK,ENa)',[-80 -60; -85 -65]}; % checked
%       This sets modifications:
%           * E_EK, I_EK = -80 and E_ENa, I_ENa = -85
%           * E_EK, I_EK = -60 and E_ENa, I_ENa = -65
% vary={'(E,I)','(EK,ENa)',cat(3,[-80 -60], [-85 -65])}; % checked
%       This sets modifications:
%           * E_EK, E_ENa = -80 and I_EK, I_ENa = -85
%           * E_EK, E_ENa = -60 and I_EK, I_ENa = -65
% vary={'(E,I)','(EK,ENa)',cat(3, [-75 -55; -80 -60], [-85 -65; -90 -70])}; % checked
%       This sets modifications:
%           * E_EK = -75, E_ENa = -80, I_EK = -85, I_ENa = -90.
%           * E_EK = -55, E_ENa = -60, I_EK = -65, I_ENa = -70.
```

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