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Welcome to the E-mail Archive for the DynaSim Users mailing list!
DynaSim is a toolbox for modeling and simulating dynamical systems in Matlab.
You can download the DynaSim toolbox at:
https://dynasimtoolbox.org
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Julian Thrash
Nov 21
Deploying DynaSim to a MATLAB Packaged App Issue
Hi, I'm a new user to DynaSim and working on a project designing an app interface for a
unread,
Deploying DynaSim to a MATLAB Packaged App Issue
Hi, I'm a new user to DynaSim and working on a project designing an app interface for a
Nov 21
Jian Carlo Nocon
10/14/21
Problem with implementing large synaptic delays
Hi all, I'm trying to implement a large synaptic delay between two populations of neurons in
unread,
Problem with implementing large synaptic delays
Hi all, I'm trying to implement a large synaptic delay between two populations of neurons in
10/14/21
Jason Sherfey
9/15/21
Job Opportunity (Fall 2021)
Hello DynaSim Users and Developers, Is anyone interested in working with me on a small project this
unread,
Job Opportunity (Fall 2021)
Hello DynaSim Users and Developers, Is anyone interested in working with me on a small project this
9/15/21
Gunjan Sharma
, …
Jason Sherfey
5
3/16/21
error in ds_simulate
Thank you Jason, the code is working now. On Tuesday, March 16, 2021 at 5:00:32 AM UTC+5:30 jssh...@
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error in ds_simulate
Thank you Jason, the code is working now. On Tuesday, March 16, 2021 at 5:00:32 AM UTC+5:30 jssh...@
3/16/21
Wei, Jingjin
1/14/21
Using dynasim to generate inhibitory synaptic current at specified frequency
Hi all, I was wondering if anyone has experience generating a rhythmic inhibitory synaptic current (
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Using dynasim to generate inhibitory synaptic current at specified frequency
Hi all, I was wondering if anyone has experience generating a rhythmic inhibitory synaptic current (
1/14/21
thomas....@ugent.be
8/11/20
Is Euler in Dynasim forward or backward?
Hi all, I was wondering if the 'Euler' solver in Dynasim (dsSimulate(spec,'solver',
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Is Euler in Dynasim forward or backward?
Hi all, I was wondering if the 'Euler' solver in Dynasim (dsSimulate(spec,'solver',
8/11/20
Wei, Jingjin
, …
Julia Chartove
6
7/23/20
Describe white noise intensity
Popping in with a general comment that it would be great if the Dynasim documentation (or some
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Describe white noise intensity
Popping in with a general comment that it would be great if the Dynasim documentation (or some
7/23/20
Bolun Chen
,
Jason Sherfey via DynaSim
3
4/28/20
Re: [DS] Solving stochastic differential equations
Hi Jason, Thank you for the quick reply and suggestions. I'll try to implement a sde solver and
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Re: [DS] Solving stochastic differential equations
Hi Jason, Thank you for the quick reply and suggestions. I'll try to implement a sde solver and
4/28/20
Salva Ardid
2
4/2/20
Re: [DS] Matrix for strength of the connection values?
Actually disregard what I said before, I don't think it is correct. On second thoughts, I think
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Re: [DS] Matrix for strength of the connection values?
Actually disregard what I said before, I don't think it is correct. On second thoughts, I think
4/2/20
yar...@gmail.com
,
Erik Roberts
2
3/16/20
Error with rastergram
to help us help you, temporarily edit dsPlot, write a line write above it with “keyboard”, then
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Error with rastergram
to help us help you, temporarily edit dsPlot, write a line write above it with “keyboard”, then
3/16/20
Young-Ah Rho
,
Ardid, Salva
2
2/21/20
Errors when using R2019b Matlab in the Mac OS (Mojave, Version 10.14.6)
This should be fixed in the dev branch, else please open a new issue in the github repo. For
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Errors when using R2019b Matlab in the Mac OS (Mojave, Version 10.14.6)
This should be fixed in the dev branch, else please open a new issue in the github repo. For
2/21/20
thomas....@ugent.be
,
Ardid, Salva
4
12/4/19
Gap junction depends on the pre- and postsynaptic intracellular concentrations
Yes, that seems right. Perhaps it is different in the Dev branch, but I'm not sure. What Dynasim
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Gap junction depends on the pre- and postsynaptic intracellular concentrations
Yes, that seems right. Perhaps it is different in the Dev branch, but I'm not sure. What Dynasim
12/4/19
Wei, Jingjin
,
Erik Roberts
3
11/18/19
dsCheckData doesn't work for data matrix
Hi Erik, In many analytic functions in dynasim, at the very begining there is this line: % Check
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dsCheckData doesn't work for data matrix
Hi Erik, In many analytic functions in dynasim, at the very begining there is this line: % Check
11/18/19
Wei, Jingjin
, …
Erik Roberts
7
11/17/19
Warning: File '.lock_20190706105733336_10000000' not found.
i would debug it manually: run it again after putting a keyboard/debug halt before dsCreateBatch (
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Warning: File '.lock_20190706105733336_10000000' not found.
i would debug it manually: run it again after putting a keyboard/debug halt before dsCreateBatch (
11/17/19
Wei, Jingjin
11/15/19
How to change/specify the project the job is submitted to (cluster_flag=1)
Hi Dynasim community: In case you use BU clusters and know what happens with cluster_flag=1: How does
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How to change/specify the project the job is submitted to (cluster_flag=1)
Hi Dynasim community: In case you use BU clusters and know what happens with cluster_flag=1: How does
11/15/19
Erik Roberts
11/7/19
Vary Population Size Trick
To effectively vary population size: Have max population size. Have a function take a scalar for
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Vary Population Size Trick
To effectively vary population size: Have max population size. Have a function take a scalar for
11/7/19
Wei, Jingjin
, …
Erik Roberts
3
7/25/19
Save partial data
1) for subsets of data (when save_data_flag=1): look at the options in dsExportData used in
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Save partial data
1) for subsets of data (when save_data_flag=1): look at the options in dsExportData used in
7/25/19
Wei, Jingjin
,
Erik Roberts
2
7/5/19
Adding a mechanism twice to the same population.
no, each mech has to be unique for each population. also each param is tried for each mech,
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Adding a mechanism twice to the same population.
no, each mech has to be unique for each population. also each param is tried for each mech,
7/5/19
Wei, Jingjin
6/15/19
Issue: vary both population size doesn't work properly with dsSimulate
Hi all, When varying two population sizes and maintain its ratio, I did: vary = {'(E,I)',
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Issue: vary both population size doesn't work properly with dsSimulate
Hi all, When varying two population sizes and maintain its ratio, I did: vary = {'(E,I)',
6/15/19
Wei, Jingjin
,
Erik Roberts
2
6/13/19
dsCalcPower calculate the wrong variable
it's a regular expression, try this: dsSelectVariables(data, 'E_V$') On Jun 13, 2019, at
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dsCalcPower calculate the wrong variable
it's a regular expression, try this: dsSelectVariables(data, 'E_V$') On Jun 13, 2019, at
6/13/19
Wei, Jingjin
,
Jason Sherfey
2
6/11/19
Reset during a simulation
Hi Jingjin, Here's one way to do it. This should work equally well for a population of cells.
unread,
Reset during a simulation
Hi Jingjin, Here's one way to do it. This should work equally well for a population of cells.
6/11/19
Wei, Jingjin
,
Erik Roberts
2
6/3/19
Turn on the notation of varied parameter
Not that I know of. It doesn't float over the figure so sometimes it's not visible due to
unread,
Turn on the notation of varied parameter
Not that I know of. It doesn't float over the figure so sometimes it's not visible due to
6/3/19
Wei, Jingjin
,
Erik Roberts
2
6/3/19
varying gAMPA and gGABAa together
Here are the ways to covary pairs and specify sets: ``` % Vary two parameters (run a simulation for
unread,
varying gAMPA and gGABAa together
Here are the ways to covary pairs and specify sets: ``` % Vary two parameters (run a simulation for
6/3/19
Wei, Jingjin
5/31/19
dsCalcFR in dev branch
When I have more than 1 input in dsCalcFR, like dsCalcFR(data,'bin_size',100); There is an
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dsCalcFR in dev branch
When I have more than 1 input in dsCalcFR, like dsCalcFR(data,'bin_size',100); There is an
5/31/19
Wei, Jingjin
,
Erik Roberts
2
5/31/19
Dynasim issues (qsub on newer MATLAB versions and dsPlotFR)
add 2018b to the dsCheckOptions file to try using it. We don't have it there because it's
unread,
Dynasim issues (qsub on newer MATLAB versions and dsPlotFR)
add 2018b to the dsCheckOptions file to try using it. We don't have it there because it's
5/31/19
Julia Chartove
5/29/19
seeking mechanisms
Does anyone have working files for an A-type potassium current or a high voltage activated L-type
unread,
seeking mechanisms
Does anyone have working files for an A-type potassium current or a high voltage activated L-type
5/29/19
Julia Chartove
,
Erik Roberts
2
5/21/19
dynasim not saving results/ running slowly
Try this to speed things up and reduce storage space: use dev branch with: one_solve_file_flag = 1
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dynasim not saving results/ running slowly
Try this to speed things up and reduce storage space: use dev branch with: one_solve_file_flag = 1
5/21/19
Wei, Jingjin
2
5/9/19
A strange error 'Undefined function or variable 'X'.'
Nevermind please ignore my last email, turned out that I deleted a line by mistake and did not spot
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A strange error 'Undefined function or variable 'X'.'
Nevermind please ignore my last email, turned out that I deleted a line by mistake and did not spot
5/9/19
Wei, Jingjin
, …
Jason Sherfey
4
5/8/19
time_limit option in dsCalcPower
I can't confirm that right now, but I do have a workaround if that's the case. You can use
unread,
time_limit option in dsCalcPower
I can't confirm that right now, but I do have a workaround if that's the case. You can use
5/8/19
Wei, Jingjin
, …
Jason Sherfey
5
5/6/19
Using time t as a input in functions?
Hi Jason, I forgot to reply all, it was solved. Thanks! Best, Jingjin From: dynasim-users@
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Using time t as a input in functions?
Hi Jason, I forgot to reply all, it was solved. Thanks! Best, Jingjin From: dynasim-users@
5/6/19