Hi Andrew,
You can use the convenience function caerDynapseWriteCam to set the cam of a target neuron to listen to the source ID which you programmed the FPGASpikeGen to emit. If you programmed the fpgaspikegen to emit an event with address y and a virtual core ID of x you would call
caerDynapseWriteCam(yourDynapseHandle, (x << 8) + y, targetNeuronAddr, camID, synapseType);