Hi there,
maybe someone could be a nice help. Im trying to do the pangenome analysis using DuctApe fo 8 genomes. But at some point i get this result.
I attach my log file.
It seems that evertyhing is going down after this one:
HTTP Error 400: Bad Request
thanks for your help!
------------------------------------
2016-10-17 17:43:46 - ductape.actionsterm - [INFO] - KEGG DB release 80.0
2016-10-17 17:43:46 - ductape.terminal - [INFO] - 1 - Checking connectivity
2016-10-17 17:43:47 - ductape.kegg - [DEBUG] - Looking for KEGG IDs from db pathway
2016-10-17 17:43:47 - ductape.terminal - [INFO] - 2 - Fetching pathways
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 80 PATH IDs
2016-10-17 17:43:49 - ductape.kegg - [DEBUG] - Looking for KEGG compounds from 18 PATH IDs
2016-10-17 17:43:49 - ductape.terminal - [INFO] - 3 - Fetching compounds
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.terminal - [INFO] - 4 - Fetching compounds - reactions links
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:52 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 CO IDs
2016-10-17 17:43:55 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 25 CO IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 80 PATH IDs
2016-10-17 17:43:57 - ductape.terminal - [INFO] - 5 - Fetching reactions
2016-10-17 17:43:57 - ductape.kegg - [DEBUG] - Looking for KEGG reactions from 18 PATH IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Found an empty handler
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.terminal - [INFO] - 6 - Fetching rpairs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:00 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - link (rpair) failed! Attempt 1
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:01 - ductape.kegg - [DEBUG] - HTTP Error 400: Bad Request
2016-10-17 17:44:03 - ductape.kegg - [DEBUG] -
http://rest.kegg.jp/link/rpair/rn%3AR04289%2Brn%3AR09516%2Brn%3AR01506%2Brn%3AR10749%2Brn%3AR10748%2Brn%3AR10747%2Brn%3AR10746%2Brn%3AR10745%2Brn%3AR10744%2Brn%3AR10743%2Brn%3AR10742%2Brn%3AR10741%2Brn%3AR10740%2Brn%3AR06038%2Brn%3AR06039%2Brn%3AR07398%2Brn%3AR07399%2Brn%3AR07394%2Brn%3AR07395%2Brn%3AR07396%2Brn%3AR07397%2Brn%3AR07390%2Brn%3AR07392%2Brn%3AR07393%2Brn%3AR01938%2Brn%3AR01939%2Brn%3AR01932%2Brn%3AR01933%2Brn%3AR01930%2Brn%3AR01931%2Brn%3AR01936%2Brn%3AR01937%2Brn%3AR01934%2Brn%3AR06032%2Brn%3AR05228%2Brn%3AR05229%2Brn%3AR06033%2Brn%3AR05222%2Brn%3AR05223%2Brn%3AR05220%2Brn%3AR05221%2Brn%3AR05226%2Brn%3AR05227%2Brn%3AR05224%2Brn%3AR05225%2Brn%3AR02872%2Brn%3AR02873%2Brn%3AR02706%2Brn%3AR02707%2Brn%3AR02700%2Brn%3AR02877%2Brn%3AR02874%2Brn%3AR02875%2Brn%3AR03516%2Brn%3AR02878%2Brn%3AR02879%2Brn%3AR02708%2Brn%3AR02709%2Brn%3AR03517%2Brn%3AR08625%2Brn%3AR08624%2Brn%3AR07572%2Brn%3AR08626%2Brn%3AR08621%2Brn%3AR06034%2Brn%3AR08623%2Brn%3AR08622%2Brn%3AR07578%2Brn%3AR07579%2Brn%3AR06035%2Brn%3AR08629%2Brn%3AR08628%2Brn%3AR01193%2Brn%3AR10310%2Brn%3AR10311%2Brn%3AR10318%2Brn%3AR01270%2Brn%3AR06115%2Brn%3AR03474%2Brn%3AR034772016-10-17 17:44:03 - ductape.kegg - [DEBUG] - Looking for KEGG rpairs from 80 RE IDs
2016-10-17 17:44:03 - ductape.kegg - [DEBUG] -
http://rest.kegg.jp/link/rpair/rn%3AR02748%2Brn%3AR02749%2Brn%3AR02740%2Brn%3AR02741%2Brn%3AR02742%2Brn%3AR02743%2Brn%3AR02744%2Brn%3AR02745%2Brn%3AR02746%2Brn%3AR02747%2Brn%3AR08669%2Brn%3AR08668%2Brn%3AR08661%2Brn%3AR08660%2Brn%3AR08663%2Brn%3AR08662%2Brn%3AR08665%2Brn%3AR08664%2Brn%3AR08667%2Brn%3AR08666%2Brn%3AR08166%2Brn%3AR03929%2Brn%3AR03928%2Brn%3AR03299%2Brn%3AR03298%2Brn%3AR03923%2Brn%3AR03922%2Brn%3AR03297%2Brn%3AR03920%2Brn%3AR03291%2Brn%3AR03290%2Brn%3AR03293%2Brn%3AR03924%2Brn%3AR01214%2Brn%3AR05415%2Brn%3AR02528%2Brn%3AR02529%2Brn%3AR05414%2Brn%3AR02526%2Brn%3AR02527%2Brn%3AR02520%2Brn%3AR02521%2Brn%3AR02522%2Brn%3AR05416%2Brn%3AR05411%2Brn%3AR05410%2Brn%3AR05413%2Brn%3AR02372%2Brn%3AR06587%2Brn%3AR03703%2Brn%3AR03617%2Brn%3AR05419%2Brn%3AR06888%2Brn%3AR02378%2Brn%3AR06887%2Brn%3AR06886%2Brn%3AR03702%2Brn%3AR03439%2Brn%3AR06158%2Brn%3AR06151%2Brn%3AR06150%2Brn%3AR03433%2Brn%3AR06152%2Brn%3AR03435%2Brn%3AR06154%2Brn%3AR03437%2Brn%3AR06156%2Brn%3AR04801%2Brn%3AR04800%2Brn%3AR04803%2Brn%3AR04805%2Brn%3AR04804%2Brn%3AR04807%2Brn%3AR04806%2Brn%3AR04809%2Brn%3AR04808%2Brn%3AR10592%2Brn%3AR00291%2Brn%3AR00292%2Brn%3AR02263