Tomcat crashes/stops when editing/deleting metadata
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David Baker
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Dec 8, 2015, 3:44:53 PM12/8/15
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to DSpace Technical Support
When we edit metadata on items in a particular collection, the Tomcat service crashes/stops. We can replicate the issue by editing an item, clicking the Item Metadata tab, and then selecting a dc.subject for removal. The crash occurs after clicking the Update button.
DSpace 5.3 on Windows Server 2012
The following is a generated error report from Tomcat 8:
# # A fatal error has been detected by the Java Runtime Environment: # # Internal Error (sharedRuntime.cpp:834), pid=3476, tid=5676 # fatal error: exception happened outside interpreter, nmethods and vtable stubs at pc 0x0000000001104a10 # # JRE version: Java(TM) SE Runtime Environment (8.0_45-b15) (build 1.8.0_45-b15) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.45-b02 mixed mode windows-amd64 compressed oops) # Core dump written. Default location: C:\Program Files\apache-tomcat-8.0.23\hs_err_pid3476.mdmp # # If you would like to submit a bug report, please visit: # http://bugreport.java.com/bugreport/crash.jsp #
--------------- T H R E A D ---------------
Current thread (0x000000002c81a800): JavaThread "http-nio-443-exec-8" daemon [_thread_in_Java, id=5676, stack(0x0000000033810000,0x0000000033910000)]
Stack: [0x0000000033810000,0x0000000033910000] Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) V [jvm.dll+0x32b57a] V [jvm.dll+0x279873] V [jvm.dll+0x27a509] V [jvm.dll+0x2717a6] V [jvm.dll+0x228bfe] V [jvm.dll+0x297d60] V [jvm.dll+0x32b408] C [ntdll.dll+0x93f1d] C [ntdll.dll+0x54897] C [ntdll.dll+0x930aa] C 0x0000000001104a10
VM Mutex/Monitor currently owned by a thread: None
Heap: def new generation total 314560K, used 77752K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 20% used [0x00000000c0000000, 0x00000000c3798040, 0x00000000d1110000) from space 34944K, 59% used [0x00000000d1110000, 0x00000000d25662a8, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 574237K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 82% used [0x00000000d5550000, 0x00000000f8617510, 0x00000000f8617600, 0x0000000100000000) Metaspace used 87041K, capacity 88438K, committed 88792K, reserved 1128448K class space used 9340K, capacity 9675K, committed 9728K, reserved 1048576K
GC Heap History (10 events): Event: 90779.272 GC heap before {Heap before GC invocations=119 (full 4): def new generation total 314560K, used 301517K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000) from space 34944K, 62% used [0x00000000d3330000, 0x00000000d48935f0, 0x00000000d5550000) to space 34944K, 0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000) tenured generation total 699072K, used 527753K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 75% used [0x00000000d5550000, 0x00000000f58b25c8, 0x00000000f58b2600, 0x0000000100000000) Metaspace used 86927K, capacity 88314K, committed 88792K, reserved 1128448K class space used 9334K, capacity 9665K, committed 9728K, reserved 1048576K Event: 90779.316 GC heap after Heap after GC invocations=120 (full 4): def new generation total 314560K, used 16676K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000) from space 34944K, 47% used [0x00000000d1110000, 0x00000000d2159318, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000) Metaspace used 86927K, capacity 88314K, committed 88792K, reserved 1128448K class space used 9334K, capacity 9665K, committed 9728K, reserved 1048576K } Event: 91018.596 GC heap before {Heap before GC invocations=120 (full 4): def new generation total 314560K, used 295485K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 99% used [0x00000000c0000000, 0x00000000d1046210, 0x00000000d1110000) from space 34944K, 47% used [0x00000000d1110000, 0x00000000d2159318, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000) Metaspace used 86946K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K Event: 91018.633 GC heap after Heap after GC invocations=121 (full 4): def new generation total 314560K, used 29389K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000) from space 34944K, 84% used [0x00000000d3330000, 0x00000000d4fe3498, 0x00000000d5550000) to space 34944K, 0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000) tenured generation total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000) Metaspace used 86946K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K } Event: 91198.288 GC heap before {Heap before GC invocations=121 (full 4): def new generation total 314560K, used 309005K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000) from space 34944K, 84% used [0x00000000d3330000, 0x00000000d4fe3498, 0x00000000d5550000) to space 34944K, 0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000) tenured generation total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000) Metaspace used 86965K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K Event: 91198.341 GC heap after Heap after GC invocations=122 (full 4): def new generation total 314560K, used 13252K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000) from space 34944K, 37% used [0x00000000d1110000, 0x00000000d1e01348, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000) Metaspace used 86965K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K } Event: 91419.821 GC heap before {Heap before GC invocations=122 (full 4): def new generation total 314560K, used 292868K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000) from space 34944K, 37% used [0x00000000d1110000, 0x00000000d1e01348, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000) Metaspace used 86969K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K Event: 91419.858 GC heap after Heap after GC invocations=123 (full 4): def new generation total 314560K, used 23773K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000) from space 34944K, 68% used [0x00000000d3330000, 0x00000000d4a67540, 0x00000000d5550000) to space 34944K, 0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000) tenured generation total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000) Metaspace used 86969K, capacity 88332K, committed 88792K, reserved 1128448K class space used 9336K, capacity 9668K, committed 9728K, reserved 1048576K } Event: 91588.161 GC heap before {Heap before GC invocations=123 (full 4): def new generation total 314560K, used 303389K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000) from space 34944K, 68% used [0x00000000d3330000, 0x00000000d4a67540, 0x00000000d5550000) to space 34944K, 0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000) tenured generation total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000) Metaspace used 87034K, capacity 88438K, committed 88792K, reserved 1128448K class space used 9340K, capacity 9675K, committed 9728K, reserved 1048576K Event: 91588.205 GC heap after Heap after GC invocations=124 (full 4): def new generation total 314560K, used 20824K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000) eden space 279616K, 0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000) from space 34944K, 59% used [0x00000000d1110000, 0x00000000d25662a8, 0x00000000d3330000) to space 34944K, 0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000) tenured generation total 699072K, used 574237K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000) the space 699072K, 82% used [0x00000000d5550000, 0x00000000f8617510, 0x00000000f8617600, 0x0000000100000000) Metaspace used 87034K, capacity 88438K, committed 88792K, reserved 1128448K class space used 9340K, capacity 9675K, committed 9728K, reserved 1048576K }
vm_info: Java HotSpot(TM) 64-Bit Server VM (25.45-b02) for windows-amd64 JRE (1.8.0_45-b15), built on Apr 30 2015 12:40:44 by "java_re" with MS VC++ 10.0 (VS2010)
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to David Baker, DSpace Technical Support
Thank you for your report, this is the first time I've heard about
such problem. I couldn't reproduce it on 5.4 on Debian, neither in
XMLUI not in JSPUI.
Here's a problem in OpenJDK 8u25 that looks similar: