Tomcat crashes/stops when editing/deleting metadata

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David Baker

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Dec 8, 2015, 3:44:53 PM12/8/15
to DSpace Technical Support
When we edit metadata on items in a particular collection, the Tomcat service crashes/stops. We can replicate the issue by editing an item, clicking the Item Metadata tab, and then selecting a dc.subject for removal. The crash occurs after clicking the Update button.

DSpace 5.3 on Windows Server 2012

The following is a generated error report from Tomcat 8:

#
# A fatal error has been detected by the Java Runtime Environment:
#
#  Internal Error (sharedRuntime.cpp:834), pid=3476, tid=5676
#  fatal error: exception happened outside interpreter, nmethods and vtable stubs at pc 0x0000000001104a10
#
# JRE version: Java(TM) SE Runtime Environment (8.0_45-b15) (build 1.8.0_45-b15)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (25.45-b02 mixed mode windows-amd64 compressed oops)
# Core dump written. Default location: C:\Program Files\apache-tomcat-8.0.23\hs_err_pid3476.mdmp
#
# If you would like to submit a bug report, please visit:
#   http://bugreport.java.com/bugreport/crash.jsp
#

---------------  T H R E A D  ---------------

Current thread (0x000000002c81a800):  JavaThread "http-nio-443-exec-8" daemon [_thread_in_Java, id=5676, stack(0x0000000033810000,0x0000000033910000)]

Stack: [0x0000000033810000,0x0000000033910000]
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
V  [jvm.dll+0x32b57a]
V  [jvm.dll+0x279873]
V  [jvm.dll+0x27a509]
V  [jvm.dll+0x2717a6]
V  [jvm.dll+0x228bfe]
V  [jvm.dll+0x297d60]
V  [jvm.dll+0x32b408]
C  [ntdll.dll+0x93f1d]
C  [ntdll.dll+0x54897]
C  [ntdll.dll+0x930aa]
C  0x0000000001104a10


---------------  P R O C E S S  ---------------

Java Threads: ( => current thread )
  0x000000002b5bd800 JavaThread "commitScheduler-10-thread-1" [_thread_blocked, id=7336, stack(0x0000000031220000,0x0000000031320000)]
  0x000000002c823800 JavaThread "commitScheduler-13-thread-1" [_thread_blocked, id=7952, stack(0x0000000034370000,0x0000000034470000)]
  0x000000002c823000 JavaThread "http-apr-80-exec-11" daemon [_thread_blocked, id=8708, stack(0x0000000034270000,0x0000000034370000)]
  0x000000002c822000 JavaThread "commitScheduler-16-thread-1" [_thread_blocked, id=4964, stack(0x0000000033e10000,0x0000000033f10000)]
  0x000000002c81b800 JavaThread "Thread-12" daemon [_thread_in_native, id=508, stack(0x0000000033410000,0x0000000033510000)]
  0x000000002c81d800 JavaThread "http-nio-443-exec-10" daemon [_thread_blocked, id=9504, stack(0x0000000033310000,0x0000000033410000)]
  0x000000002c81c000 JavaThread "http-apr-80-exec-10" daemon [_thread_blocked, id=5772, stack(0x0000000033b10000,0x0000000033c10000)]
  0x000000002c81e800 JavaThread "http-apr-80-exec-9" daemon [_thread_blocked, id=3536, stack(0x0000000033a10000,0x0000000033b10000)]
  0x000000002c81d000 JavaThread "http-nio-443-exec-9" daemon [_thread_blocked, id=5412, stack(0x0000000033910000,0x0000000033a10000)]
=>0x000000002c81a800 JavaThread "http-nio-443-exec-8" daemon [_thread_in_Java, id=5676, stack(0x0000000033810000,0x0000000033910000)]
  0x0000000024b05800 JavaThread "http-nio-443-exec-7" daemon [_thread_blocked, id=5888, stack(0x0000000033710000,0x0000000033810000)]
  0x0000000024b07000 JavaThread "http-nio-443-exec-6" daemon [_thread_blocked, id=4060, stack(0x0000000033610000,0x0000000033710000)]
  0x0000000024b02800 JavaThread "http-nio-443-exec-5" daemon [_thread_blocked, id=6568, stack(0x0000000033510000,0x0000000033610000)]
  0x0000000024b03800 JavaThread "http-apr-80-exec-8" daemon [_thread_blocked, id=8876, stack(0x0000000033210000,0x0000000033310000)]
  0x0000000024b05000 JavaThread "http-apr-80-exec-7" daemon [_thread_blocked, id=8628, stack(0x00000000142a0000,0x00000000143a0000)]
  0x0000000024b01000 JavaThread "http-apr-80-exec-6" daemon [_thread_blocked, id=8976, stack(0x00000000141a0000,0x00000000142a0000)]
  0x00000000193ad000 JavaThread "http-apr-80-exec-5" daemon [_thread_blocked, id=8036, stack(0x0000000032d10000,0x0000000032e10000)]
  0x00000000193ae800 JavaThread "http-apr-80-exec-4" daemon [_thread_blocked, id=7876, stack(0x0000000032c10000,0x0000000032d10000)]
  0x00000000193ae000 JavaThread "http-apr-80-exec-3" daemon [_thread_blocked, id=7080, stack(0x0000000032b10000,0x0000000032c10000)]
  0x00000000193a9800 JavaThread "http-apr-80-exec-2" daemon [_thread_blocked, id=7856, stack(0x0000000032a10000,0x0000000032b10000)]
  0x00000000193a8800 JavaThread "http-nio-443-exec-4" daemon [_thread_blocked, id=6356, stack(0x00000000325f0000,0x00000000326f0000)]
  0x00000000193ab800 JavaThread "http-nio-443-exec-3" daemon [_thread_blocked, id=7936, stack(0x00000000324f0000,0x00000000325f0000)]
  0x00000000193aa000 JavaThread "http-nio-443-exec-2" daemon [_thread_blocked, id=6640, stack(0x00000000321f0000,0x00000000322f0000)]
  0x00000000193a8000 JavaThread "http-nio-443-exec-1" daemon [_thread_blocked, id=7776, stack(0x00000000320f0000,0x00000000321f0000)]
  0x00000000193ab000 JavaThread "ajp-apr-8009-AsyncTimeout" daemon [_thread_blocked, id=9208, stack(0x0000000031ff0000,0x00000000320f0000)]
  0x00000000193a4000 JavaThread "ajp-apr-8009-Acceptor-0" daemon [_thread_in_native, id=7184, stack(0x0000000031ef0000,0x0000000031ff0000)]
  0x00000000193a6800 JavaThread "ajp-apr-8009-Poller" daemon [_thread_blocked, id=5200, stack(0x0000000031df0000,0x0000000031ef0000)]
  0x00000000193a5800 JavaThread "http-nio-443-Acceptor-0" daemon [_thread_in_native, id=6184, stack(0x0000000031cf0000,0x0000000031df0000)]
  0x00000000193a7000 JavaThread "http-nio-443-ClientPoller-0" daemon [_thread_in_native, id=6372, stack(0x0000000031bf0000,0x0000000031cf0000)]
  0x00000000193a5000 JavaThread "http-apr-80-AsyncTimeout" daemon [_thread_blocked, id=7644, stack(0x0000000031af0000,0x0000000031bf0000)]
  0x00000000193a0800 JavaThread "http-apr-80-Acceptor-0" daemon [_thread_in_native, id=5808, stack(0x00000000319f0000,0x0000000031af0000)]
  0x00000000193a2800 JavaThread "http-apr-80-Sendfile" daemon [_thread_blocked, id=6720, stack(0x0000000030090000,0x0000000030190000)]
  0x00000000193a2000 JavaThread "http-apr-80-Poller" daemon [_thread_in_native, id=7288, stack(0x000000002fd20000,0x000000002fe20000)]
  0x00000000193a1000 JavaThread "ContainerBackgroundProcessor[StandardEngine[Catalina]]" daemon [_thread_blocked, id=8068, stack(0x000000002fc20000,0x000000002fd20000)]
  0x00000000193a3800 JavaThread "Thread-10" daemon [_thread_blocked, id=7892, stack(0x00000000316f0000,0x00000000317f0000)]
  0x0000000024b06800 JavaThread "searcherExecutor-18-thread-1" [_thread_blocked, id=7284, stack(0x00000000315f0000,0x00000000316f0000)]
  0x0000000024b04000 JavaThread "searcherExecutor-8-thread-1" [_thread_blocked, id=5844, stack(0x0000000030890000,0x0000000030990000)]
  0x0000000024b00800 JavaThread "searcherExecutor-6-thread-1" [_thread_blocked, id=6216, stack(0x0000000030790000,0x0000000030890000)]
  0x0000000024b02000 JavaThread "searcherExecutor-7-thread-1" [_thread_blocked, id=11020, stack(0x0000000000bb0000,0x0000000000cb0000)]
  0x000000001253d000 JavaThread "Thread-9" daemon [_thread_in_vm, id=4464, stack(0x000000002f520000,0x000000002f620000)]
  0x0000000025dbe800 JavaThread "Thread-7" [_thread_blocked, id=5072, stack(0x000000002f420000,0x000000002f520000)]
  0x000000001cbcc800 JavaThread "Store cocoon-ehcache Spool Thread" daemon [_thread_blocked, id=5324, stack(0x000000002f320000,0x000000002f420000)]
  0x00000000184d6800 JavaThread "net.sf.ehcache.CacheManager@2184fea9" daemon [_thread_blocked, id=3236, stack(0x000000002d410000,0x000000002d510000)]
  0x0000000019764800 JavaThread "net.sf.ehcache.CacheManager@121780a3" daemon [_thread_blocked, id=3380, stack(0x00000000293b0000,0x00000000294b0000)]
  0x0000000012824800 JavaThread "NioBlockingSelector.BlockPoller-1" daemon [_thread_in_native, id=7380, stack(0x0000000013fb0000,0x00000000140b0000)]
  0x00000000124a1800 JavaThread "GC Daemon" daemon [_thread_blocked, id=4268, stack(0x0000000013ab0000,0x0000000013bb0000)]
  0x0000000011b2e800 JavaThread "AsyncFileHandlerWriter-723074861" daemon [_thread_blocked, id=3572, stack(0x0000000011ee0000,0x0000000011fe0000)]
  0x0000000011136000 JavaThread "Service Thread" daemon [_thread_blocked, id=7860, stack(0x00000000118e0000,0x00000000119e0000)]
  0x000000001112c800 JavaThread "C1 CompilerThread1" daemon [_thread_blocked, id=8032, stack(0x00000000117e0000,0x00000000118e0000)]
  0x00000000110d3800 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=8164, stack(0x00000000116e0000,0x00000000117e0000)]
  0x00000000110d2800 JavaThread "Attach Listener" daemon [_thread_blocked, id=6368, stack(0x00000000115e0000,0x00000000116e0000)]
  0x00000000110d0000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=7712, stack(0x00000000114e0000,0x00000000115e0000)]
  0x0000000011090000 JavaThread "Finalizer" daemon [_thread_blocked, id=4344, stack(0x00000000113e0000,0x00000000114e0000)]
  0x000000001108e000 JavaThread "Reference Handler" daemon [_thread_blocked, id=7316, stack(0x00000000112e0000,0x00000000113e0000)]
  0x00000000004bd800 JavaThread "main" [_thread_in_native, id=6868, stack(0x0000000000eb0000,0x0000000000fb0000)]

Other Threads:
  0x000000001108a800 VMThread [stack: 0x00000000111e0000,0x00000000112e0000] [id=6992]
  0x0000000011139800 WatcherThread [stack: 0x00000000119e0000,0x0000000011ae0000] [id=100]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap:
 def new generation   total 314560K, used 77752K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,  20% used [0x00000000c0000000, 0x00000000c3798040, 0x00000000d1110000)
  from space 34944K,  59% used [0x00000000d1110000, 0x00000000d25662a8, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 574237K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  82% used [0x00000000d5550000, 0x00000000f8617510, 0x00000000f8617600, 0x0000000100000000)
 Metaspace       used 87041K, capacity 88438K, committed 88792K, reserved 1128448K
  class space    used 9340K, capacity 9675K, committed 9728K, reserved 1048576K

Card table byte_map: [0x0000000010470000,0x0000000010680000] byte_map_base: 0x000000000fe70000

Polling page: 0x0000000000310000

CodeCache: size=245760Kb used=83664Kb max_used=83675Kb free=162095Kb
 bounds [0x00000000010b0000, 0x0000000006300000, 0x00000000100b0000]
 total_blobs=19993 nmethods=19282 adapters=619
 compilation: enabled

Compilation events (10 events):
Event: 91594.162 Thread 0x00000000110d3800 26485       4       org.apache.lucene.analysis.util.CharTokenizer::reset (32 bytes)
Event: 91594.163 Thread 0x00000000110d3800 nmethod 26485 0x0000000001fb7dd0 code [0x0000000001fb7f00, 0x0000000001fb7fb8]
Event: 91594.169 Thread 0x00000000110d3800 26486       4       org.apache.lucene.analysis.util.CharTokenizer::end (22 bytes)
Event: 91594.192 Thread 0x00000000110d3800 nmethod 26486 0x000000000438c510 code [0x000000000438c700, 0x000000000438d1c8]
Event: 91594.217 Thread 0x00000000110d3800 26487       4       org.apache.lucene.util.fst.BytesStore::writeBytes (206 bytes)
Event: 91594.222 Thread 0x00000000110d3800 nmethod 26487 0x000000000438e150 code [0x000000000438e2a0, 0x000000000438e578]
Event: 91594.254 Thread 0x000000001112c800 26488       3       org.apache.solr.core.IndexDeletionPolicyWrapper$IndexCommitWrapper::getGeneration (8 bytes)
Event: 91594.254 Thread 0x000000001112c800 nmethod 26488 0x00000000047c3450 code [0x00000000047c35c0, 0x00000000047c37c0]
Event: 91594.289 Thread 0x00000000110d3800 26489       4       org.apache.xpath.objects.XRTreeFrag::num (12 bytes)
Event: 91594.292 Thread 0x00000000110d3800 nmethod 26489 0x0000000002c0ec90 code [0x0000000002c0ee00, 0x0000000002c0ef78]

GC Heap History (10 events):
Event: 90779.272 GC heap before
{Heap before GC invocations=119 (full 4):
 def new generation   total 314560K, used 301517K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000)
  from space 34944K,  62% used [0x00000000d3330000, 0x00000000d48935f0, 0x00000000d5550000)
  to   space 34944K,   0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000)
 tenured generation   total 699072K, used 527753K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  75% used [0x00000000d5550000, 0x00000000f58b25c8, 0x00000000f58b2600, 0x0000000100000000)
 Metaspace       used 86927K, capacity 88314K, committed 88792K, reserved 1128448K
  class space    used 9334K, capacity 9665K, committed 9728K, reserved 1048576K
Event: 90779.316 GC heap after
Heap after GC invocations=120 (full 4):
 def new generation   total 314560K, used 16676K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,   0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000)
  from space 34944K,  47% used [0x00000000d1110000, 0x00000000d2159318, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000)
 Metaspace       used 86927K, capacity 88314K, committed 88792K, reserved 1128448K
  class space    used 9334K, capacity 9665K, committed 9728K, reserved 1048576K
}
Event: 91018.596 GC heap before
{Heap before GC invocations=120 (full 4):
 def new generation   total 314560K, used 295485K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,  99% used [0x00000000c0000000, 0x00000000d1046210, 0x00000000d1110000)
  from space 34944K,  47% used [0x00000000d1110000, 0x00000000d2159318, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000)
 Metaspace       used 86946K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
Event: 91018.633 GC heap after
Heap after GC invocations=121 (full 4):
 def new generation   total 314560K, used 29389K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,   0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000)
  from space 34944K,  84% used [0x00000000d3330000, 0x00000000d4fe3498, 0x00000000d5550000)
  to   space 34944K,   0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000)
 tenured generation   total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000)
 Metaspace       used 86946K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
}
Event: 91198.288 GC heap before
{Heap before GC invocations=121 (full 4):
 def new generation   total 314560K, used 309005K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000)
  from space 34944K,  84% used [0x00000000d3330000, 0x00000000d4fe3498, 0x00000000d5550000)
  to   space 34944K,   0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000)
 tenured generation   total 699072K, used 544066K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  77% used [0x00000000d5550000, 0x00000000f68a0bf8, 0x00000000f68a0c00, 0x0000000100000000)
 Metaspace       used 86965K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
Event: 91198.341 GC heap after
Heap after GC invocations=122 (full 4):
 def new generation   total 314560K, used 13252K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,   0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000)
  from space 34944K,  37% used [0x00000000d1110000, 0x00000000d1e01348, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000)
 Metaspace       used 86965K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
}
Event: 91419.821 GC heap before
{Heap before GC invocations=122 (full 4):
 def new generation   total 314560K, used 292868K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000)
  from space 34944K,  37% used [0x00000000d1110000, 0x00000000d1e01348, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000)
 Metaspace       used 86969K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
Event: 91419.858 GC heap after
Heap after GC invocations=123 (full 4):
 def new generation   total 314560K, used 23773K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,   0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000)
  from space 34944K,  68% used [0x00000000d3330000, 0x00000000d4a67540, 0x00000000d5550000)
  to   space 34944K,   0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000)
 tenured generation   total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000)
 Metaspace       used 86969K, capacity 88332K, committed 88792K, reserved 1128448K
  class space    used 9336K, capacity 9668K, committed 9728K, reserved 1048576K
}
Event: 91588.161 GC heap before
{Heap before GC invocations=123 (full 4):
 def new generation   total 314560K, used 303389K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K, 100% used [0x00000000c0000000, 0x00000000d1110000, 0x00000000d1110000)
  from space 34944K,  68% used [0x00000000d3330000, 0x00000000d4a67540, 0x00000000d5550000)
  to   space 34944K,   0% used [0x00000000d1110000, 0x00000000d1110000, 0x00000000d3330000)
 tenured generation   total 699072K, used 567096K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  81% used [0x00000000d5550000, 0x00000000f7f1e3e8, 0x00000000f7f1e400, 0x0000000100000000)
 Metaspace       used 87034K, capacity 88438K, committed 88792K, reserved 1128448K
  class space    used 9340K, capacity 9675K, committed 9728K, reserved 1048576K
Event: 91588.205 GC heap after
Heap after GC invocations=124 (full 4):
 def new generation   total 314560K, used 20824K [0x00000000c0000000, 0x00000000d5550000, 0x00000000d5550000)
  eden space 279616K,   0% used [0x00000000c0000000, 0x00000000c0000000, 0x00000000d1110000)
  from space 34944K,  59% used [0x00000000d1110000, 0x00000000d25662a8, 0x00000000d3330000)
  to   space 34944K,   0% used [0x00000000d3330000, 0x00000000d3330000, 0x00000000d5550000)
 tenured generation   total 699072K, used 574237K [0x00000000d5550000, 0x0000000100000000, 0x0000000100000000)
   the space 699072K,  82% used [0x00000000d5550000, 0x00000000f8617510, 0x00000000f8617600, 0x0000000100000000)
 Metaspace       used 87034K, capacity 88438K, committed 88792K, reserved 1128448K
  class space    used 9340K, capacity 9675K, committed 9728K, reserved 1048576K
}

Deoptimization events (10 events):
Event: 90789.824 Thread 0x0000000024b05800 Uncommon trap: reason=null_check action=make_not_entrant pc=0x000000000546a45c method=org.mozilla.javascript.NativeJavaObject.getConversionWeight(Ljava/lang/Object;Ljava/lang/Class;)I @ 271
Event: 90796.963 Thread 0x00000000193a8800 Uncommon trap: reason=null_check action=maybe_recompile pc=0x000000000561f11c method=org.apache.cocoon.components.source.impl.SitemapSource.init()V @ 132
Event: 90890.274 Thread 0x00000000193a8000 Uncommon trap: reason=null_check action=maybe_recompile pc=0x000000000561f11c method=org.apache.cocoon.components.source.impl.SitemapSource.init()V @ 132
Event: 90974.732 Thread 0x000000002c81a800 Uncommon trap: reason=null_check action=maybe_recompile pc=0x000000000561f11c method=org.apache.cocoon.components.source.impl.SitemapSource.init()V @ 132
Event: 91018.532 Thread 0x00000000193ae000 Uncommon trap: reason=unstable_if action=reinterpret pc=0x00000000043655c4 method=org.apache.lucene.util.fst.FST.findTargetArc(ILorg/apache/lucene/util/fst/FST$Arc;Lorg/apache/lucene/util/fst/FST$Arc;Lorg/apache/lucene/util/fst/FST$BytesReader;)Lorg/apache?—©H>Rö@
Event: 91427.893 Thread 0x00000000193a9800 Uncommon trap: reason=class_check action=maybe_recompile pc=0x0000000005ce1d00 method=org.apache.lucene.index.BufferedUpdatesStream.applyQueryDeletes(Ljava/lang/Iterable;Lorg/apache/lucene/index/ReadersAndUpdates;Lorg/apache/lucene/index/SegmentReader;)J @Ÿ?¤K>Rö@
Event: 91427.893 Thread 0x00000000193a9800 Uncommon trap: reason=unstable_if action=reinterpret pc=0x0000000005ce22e4 method=org.apache.lucene.index.BufferedUpdatesStream.applyQueryDeletes(Ljava/lang/Iterable;Lorg/apache/lucene/index/ReadersAndUpdates;Lorg/apache/lucene/index/SegmentReader;)J @ 127àz!o×[ö@
Event: 91581.465 Thread 0x000000002c81e800 Uncommon trap: reason=array_check action=maybe_recompile pc=0x00000000049a93a0 method=org.apache.lucene.util.ArrayUtil.swap([Ljava/lang/Object;II)V @ 13
Event: 91588.219 Thread 0x00000000193ae800 Uncommon trap: reason=array_check action=maybe_recompile pc=0x00000000049a93a0 method=org.apache.lucene.util.ArrayUtil.swap([Ljava/lang/Object;II)V @ 13
Event: 91605.212 Thread 0x000000002c81a800 Uncommon trap: reason=unstable_if action=reinterpret pc=0x0000000005eeab08 method=com.sun.crypto.provider.CipherCore.doFinal([BII[BI)I @ 405

Internal exceptions (10 events):
Event: 91588.308 Thread 0x00000000193ae800 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c0979518) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91588.309 Thread 0x00000000193ae800 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c0983dc8) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91594.053 Thread 0x0000000024b07000 Exception <a 'java/net/SocketTimeoutException': Read timed out> (0x00000000c173cbc0) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 735]
Event: 91594.061 Thread 0x0000000024b07000 Exception <a 'java/net/SocketTimeoutException': Read timed out> (0x00000000c1764b38) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 735]
Event: 91594.064 Thread 0x0000000024b03800 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c1883338) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91594.096 Thread 0x0000000024b07000 Exception <a 'java/net/SocketTimeoutException': Read timed out> (0x00000000c191a8b0) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 735]
Event: 91594.245 Thread 0x00000000193ad000 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c2b18e38) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91594.247 Thread 0x00000000193ad000 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c2b201b8) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91594.249 Thread 0x00000000193ad000 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c2b236a8) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]
Event: 91594.250 Thread 0x00000000193ad000 Exception <a 'sun/nio/fs/WindowsException'> (0x00000000c2b2df68) thrown at [C:\re\workspace\8-2-build-windows-amd64-cygwin\jdk8u45\3627\hotspot\src\share\vm\prims\jni.cpp, line 709]

Events (10 events):
Event: 91594.257 Executing VM operation: RevokeBias done
Event: 91594.258 Executing VM operation: RevokeBias
Event: 91594.258 Executing VM operation: RevokeBias done
Event: 91594.258 Executing VM operation: BulkRevokeBias
Event: 91594.259 Executing VM operation: BulkRevokeBias done
Event: 91594.259 Executing VM operation: RevokeBias
Event: 91594.259 Executing VM operation: RevokeBias done
Event: 91605.212 Thread 0x000000002c81a800 Uncommon trap: trap_request=0xffffff65 fr.pc=0x0000000005eeab08
Event: 91605.212 Thread 0x000000002c81a800 DEOPT PACKING pc=0x0000000005eeab08 sp=0x000000003390ea50
Event: 91605.212 Thread 0x000000002c81a800 DEOPT UNPACKING pc=0x00000000010f582a sp=0x000000003390ea28 mode 2


Dynamic libraries:
0x0000000140000000 - 0x000000014001e000     C:\Program Files\apache-tomcat-8.0.23\bin\tomcat8.exe
0x00007ffb926a0000 - 0x00007ffb9284c000     C:\Windows\SYSTEM32\ntdll.dll
0x00007ffb90ab0000 - 0x00007ffb90bee000     C:\Windows\system32\KERNEL32.DLL
0x00007ffb8fc00000 - 0x00007ffb8fd15000     C:\Windows\system32\KERNELBASE.dll
0x00007ffb908a0000 - 0x00007ffb9094a000     C:\Windows\system32\ADVAPI32.dll
0x00007ffb91010000 - 0x00007ffb9253b000     C:\Windows\system32\SHELL32.dll
0x00007ffb90c50000 - 0x00007ffb90dc7000     C:\Windows\system32\USER32.dll
0x00007ffb90090000 - 0x00007ffb9013a000     C:\Windows\system32\msvcrt.dll
0x00007ffb90140000 - 0x00007ffb90199000     C:\Windows\SYSTEM32\sechost.dll
0x00007ffb8fd20000 - 0x00007ffb8fe61000     C:\Windows\system32\RPCRT4.dll
0x00007ffb8fe70000 - 0x00007ffb90081000     C:\Windows\SYSTEM32\combase.dll
0x00007ffb90bf0000 - 0x00007ffb90c44000     C:\Windows\system32\SHLWAPI.dll
0x00007ffb901a0000 - 0x00007ffb902ef000     C:\Windows\system32\GDI32.dll
0x00007ffb8e050000 - 0x00007ffb8e102000     C:\Windows\SYSTEM32\shcore.dll
0x0000000052190000 - 0x0000000052a13000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\server\jvm.dll
0x00007ffb8a7b0000 - 0x00007ffb8a7b9000     C:\Windows\SYSTEM32\WSOCK32.dll
0x00007ffb89690000 - 0x00007ffb896b2000     C:\Windows\SYSTEM32\WINMM.dll
0x00007ffb89f60000 - 0x00007ffb89f6a000     C:\Windows\SYSTEM32\VERSION.dll
0x00007ffb903c0000 - 0x00007ffb903c7000     C:\Windows\system32\PSAPI.DLL
0x0000000051f20000 - 0x0000000051ff2000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\MSVCR100.dll
0x00007ffb90fb0000 - 0x00007ffb9100a000     C:\Windows\system32\WS2_32.dll
0x00007ffb89660000 - 0x00007ffb8968a000     C:\Windows\SYSTEM32\WINMMBASE.dll
0x00007ffb925c0000 - 0x00007ffb925c9000     C:\Windows\system32\NSI.dll
0x00007ffb8f920000 - 0x00007ffb8f96f000     C:\Windows\SYSTEM32\cfgmgr32.dll
0x00007ffb8e670000 - 0x00007ffb8e698000     C:\Windows\SYSTEM32\DEVOBJ.dll
0x0000000051ed0000 - 0x0000000051edf000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\verify.dll
0x0000000051ea0000 - 0x0000000051ec9000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\java.dll
0x0000000051e60000 - 0x0000000051e76000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\zip.dll
0x00007ffb8f7f0000 - 0x00007ffb8f805000     C:\Windows\SYSTEM32\profapi.dll
0x0000000051e00000 - 0x0000000051e0d000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\management.dll
0x0000000051de0000 - 0x0000000051dfa000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\net.dll
0x00007ffb8f000000 - 0x00007ffb8f059000     C:\Windows\system32\mswsock.dll
0x0000000051dc0000 - 0x0000000051dd1000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\nio.dll
0x0000000180000000 - 0x000000018018f000     C:\Program Files\apache-tomcat-8.0.23\bin\tcnative-1.dll
0x00007ffb8f060000 - 0x00007ffb8f080000     C:\Windows\SYSTEM32\CRYPTSP.dll
0x00007ffb8eca0000 - 0x00007ffb8ecd6000     C:\Windows\system32\rsaenh.dll
0x00007ffb8f2b0000 - 0x00007ffb8f2d6000     C:\Windows\SYSTEM32\bcrypt.dll
0x00007ffb8f660000 - 0x00007ffb8f66b000     C:\Windows\SYSTEM32\CRYPTBASE.dll
0x00007ffb8f5f0000 - 0x00007ffb8f653000     C:\Windows\SYSTEM32\bcryptPrimitives.dll
0x0000000051d90000 - 0x0000000051db4000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\sunec.dll
0x0000000051d80000 - 0x0000000051d8b000     C:\Program Files\Java\jdk1.8.0_45\jre\bin\sunmscapi.dll
0x00007ffb8fa20000 - 0x00007ffb8fbff000     C:\Windows\system32\CRYPT32.dll
0x00007ffb8f8a0000 - 0x00007ffb8f8b1000     C:\Windows\system32\MSASN1.dll
0x00007ffb8c0d0000 - 0x00007ffb8c0fa000     C:\Windows\SYSTEM32\IPHLPAPI.DLL
0x00007ffb8c100000 - 0x00007ffb8c10a000     C:\Windows\SYSTEM32\WINNSI.DLL
0x00007ffb8bc90000 - 0x00007ffb8bca6000     C:\Windows\SYSTEM32\dhcpcsvc6.DLL
0x00007ffb8bbb0000 - 0x00007ffb8bbca000     C:\Windows\SYSTEM32\dhcpcsvc.DLL
0x00007ffb8a790000 - 0x00007ffb8a7a5000     C:\Windows\system32\napinsp.dll
0x00007ffb8d500000 - 0x00007ffb8d51b000     C:\Windows\system32\NLAapi.dll
0x00007ffb8ee00000 - 0x00007ffb8eea4000     C:\Windows\SYSTEM32\DNSAPI.dll
0x00007ffb8a7e0000 - 0x00007ffb8a7ed000     C:\Windows\System32\winrnr.dll
0x00007ffb8a810000 - 0x00007ffb8a81a000     C:\Windows\System32\rasadhlp.dll
0x00007ffb8bed0000 - 0x00007ffb8bf3b000     C:\Windows\System32\fwpuclnt.dll
0x00007ffb8d070000 - 0x00007ffb8d1f9000     C:\Windows\system32\DBGHELP.DLL

VM Arguments:
jvm_args: -Dcatalina.home=C:\Program Files\apache-tomcat-8.0.23 -Dcatalina.base=C:\Program Files\apache-tomcat-8.0.23 -Djava.endorsed.dirs=C:\Program Files\apache-tomcat-8.0.23\endorsed -Djava.io.tmpdir=C:\Program Files\apache-tomcat-8.0.23\temp -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Djava.util.logging.config.file=C:\Program Files\apache-tomcat-8.0.23\conf\logging.properties exit -Xms1024m -Xmx1024m
java_command: <unknown>
java_class_path (initial): C:\Program Files\apache-tomcat-8.0.23\bin\bootstrap.jar;C:\Program Files\apache-tomcat-8.0.23\bin\tomcat-juli.jar
Launcher Type: generic

Environment Variables:
JAVA_HOME=C:\Program Files\Java\jdk1.8.0_45
PATH=C:\ProgramData\Oracle\Java\javapath;C:\Program Files\apache-maven-3.2.5\bin;%MAVEN_HOME%\bin;%M2%\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\apache-ant-1.9.4\bin;C:\Windows\system32\config\systemprofile\vim;C:\Program Files (x86)\Git\cmd;C:\Program Files\nodejs\;
USERNAME=MC-DSPACE$
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 45 Stepping 7, GenuineIntel



---------------  S Y S T E M  ---------------

OS: Windows Server 2012 R2 , 64 bit Build 9600 (6.3.9600.17415)

CPU:total 1 (1 cores per cpu, 1 threads per core) family 6 model 45 stepping 7, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, aes, clmul, tsc, tscinvbit, tscinv

Memory: 4k page, physical 4193844k(1180128k free), swap 4914740k(1746516k free)

vm_info: Java HotSpot(TM) 64-Bit Server VM (25.45-b02) for windows-amd64 JRE (1.8.0_45-b15), built on Apr 30 2015 12:40:44 by "java_re" with MS VC++ 10.0 (VS2010)

time: Tue Dec 08 15:27:15 2015
elapsed time: 91616 seconds (1d 1h 26m 56s)



helix84

unread,
Dec 9, 2015, 7:13:15 AM12/9/15
to David Baker, DSpace Technical Support
Thank you for your report, this is the first time I've heard about
such problem. I couldn't reproduce it on 5.4 on Debian, neither in
XMLUI not in JSPUI.

Here's a problem in OpenJDK 8u25 that looks similar:

https://bugs.openjdk.java.net/browse/JDK-8068400

It says that it's fixed in OpenJDK 8u60, so try upgrading and
reproducing the steps that led to the crash.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

David Baker

unread,
Dec 9, 2015, 4:51:27 PM12/9/15
to DSpace Technical Support, dba...@gmail.com, hel...@centrum.sk
helix84,
Updating the JDK/JRE to 8u66 appears to have fixed the issue. Thanks for the suggestion!

David
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