DSI Studio

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taravat rasooli, Frank Yeh2

7:58 AM

Seeking Guidance on Overlapping Tracts in DSI Studio Analysis

Tha assigned name is only a suggestion. You may refer to neuroanatomy to give a more precise naming.

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Seeking Guidance on Overlapping Tracts in DSI Studio Analysis

Tha assigned name is only a suggestion. You may refer to neuroanatomy to give a more precise naming.

7:58 AM

Jolene Foster, … Frank Yeh8

Nov 29

Sorry about the bug. Could you let me know the exact steps to reproduce the crash? Once I can

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Sorry about the bug. Could you let me know the exact steps to reproduce the crash? Once I can

Nov 29

Maria Ana, Frank Yeh12

Nov 28

Different results using mrtrix pre-processed data vs DSI studio pre-processed data

Yeh FC et. al. IEEE TMI 2010 Sorry for taking so long to get back to you. Thank you so much for all

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Different results using mrtrix pre-processed data vs DSI studio pre-processed data

Yeh FC et. al. IEEE TMI 2010 Sorry for taking so long to get back to you. Thank you so much for all

Nov 28

Ashley Pike, Frank Yeh2

Nov 27

Hou Version Tractography Batch Processing

> 1. When running --action=trk with flag --recognize=cluster_info, it creates the stat.txt,

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Hou Version Tractography Batch Processing

> 1. When running --action=trk with flag --recognize=cluster_info, it creates the stat.txt,

Nov 27

Aaron Suminski, Frank Yeh2

Nov 27

Correlational Tractography

It is a two-step process. The first step removes the effect of covariates (eg age, sex) on the

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Correlational Tractography

It is a two-step process. The first step removes the effect of covariates (eg age, sex) on the

Nov 27

Smith, Frank Yeh6

Nov 25

tracking of visual tracts

Dear Dr Frank, I will be doing DTI with more than 1500 b value and 2mm isotropic resolution. By the

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tracking of visual tracts

Dear Dr Frank, I will be doing DTI with more than 1500 b value and 2mm isotropic resolution. By the

Nov 25

Andrea Atanasov, Frank Yeh2

Nov 22

QSDR reconstruction-mouse

Did you apply the preprocessing steps as described in https://dsi-studio.labsolver.org/doc/gui_t2.

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QSDR reconstruction-mouse

Did you apply the preprocessing steps as described in https://dsi-studio.labsolver.org/doc/gui_t2.

Nov 22

Eric Kirby, Frank Yeh2

Nov 21

Stroke Tractography Analysis

> > 1. How should I be dealing with registrations of these different scans? Normally with

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Stroke Tractography Analysis

> > 1. How should I be dealing with registrations of these different scans? Normally with

Nov 21

Erica Baller, … Frank Yeh4

Nov 21

DSI studio for M2?

The "Hou" version exclusively uses Qt6 because many operating systems no longer support Qt5

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DSI studio for M2?

The "Hou" version exclusively uses Qt6 because many operating systems no longer support Qt5

Nov 21

Elizabeth Castro, Frank Yeh6

Nov 20

Saving a .tt.gz file in MATLAB

Once you convert tracts to ROI, a lot of information are gone. The last step won't work out. On

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Saving a .tt.gz file in MATLAB

Once you convert tracts to ROI, a lot of information are gone. The last step won't work out. On

Nov 20

鄢翠, Frank Yeh4

Nov 20

FSL is good and credible. Thank you for your help! If I do the pre-processing steps with FSL software

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FSL is good and credible. Thank you for your help! If I do the pre-processing steps with FSL software

Nov 20

L. Tanushree, Frank Yeh4

Nov 19

Exporting mean diffusivity

Yes, the related parameters are documented on the DSIStudio website. Best Frank L. Tanushree <

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Exporting mean diffusivity

Yes, the related parameters are documented on the DSIStudio website. Best Frank L. Tanushree <

Nov 19

B J, Frank Yeh2

Nov 19

Separate P-A b0 file added to post topup/eddy nifti file

It should be fine. You may manually check if Eddy topup is working correctly in DSI Studio. (The

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Separate P-A b0 file added to post topup/eddy nifti file

It should be fine. You may manually check if Eddy topup is working correctly in DSI Studio. (The

Nov 19

Smith, Frank Yeh2

Nov 19

Optic tract -single shell b =1000 and 64 directions

The 3mm large slice spacing is not good for mapping optic pathways. The ideal setting is to have 2mm

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Optic tract -single shell b =1000 and 64 directions

The 3mm large slice spacing is not good for mapping optic pathways. The ideal setting is to have 2mm

Nov 19

Triana Karnadipa, Frank Yeh10

Nov 18

Commands are not recognised in LQT Matlab-based

The error is related to the matlab code in LQT, which is not maintained by DSI Studio. You may

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Commands are not recognised in LQT Matlab-based

The error is related to the matlab code in LQT, which is not maintained by DSI Studio. You may

Nov 18

Nov 18

CLI Reconstruction --mask flag errors

Good afternoon, I am using the Hou version of DSI Studio and I am getting the same error message for

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CLI Reconstruction --mask flag errors

Good afternoon, I am using the Hou version of DSI Studio and I am getting the same error message for

Nov 18

Daria Sharapova, Frank Yeh3

Nov 18

correl tractography blue and red tracks difference

if it will be helpful I can download our data and more details via data upload on the dsi studio

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correl tractography blue and red tracks difference

if it will be helpful I can download our data and more details via data upload on the dsi studio

Nov 18

Hai-Ti Lin, Frank Yeh2

Nov 17

Correlational Tractography for three groups?

It is possible but not yet available in DSI Studio. Hai-Ti Lin <htdai...@gmail.com> 於 2024年11

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Correlational Tractography for three groups?

It is possible but not yet available in DSI Studio. Hai-Ti Lin <htdai...@gmail.com> 於 2024年11

Nov 17

B J, Frank Yeh3

Nov 15

Laptop specs recommendation

Thank you so much! On Friday, November 15, 2024 at 4:14:09 PM UTC-5 Frank Yeh wrote: Here's an

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Laptop specs recommendation

Thank you so much! On Friday, November 15, 2024 at 4:14:09 PM UTC-5 Frank Yeh wrote: Here's an

Nov 15

ps l, Frank Yeh2

Nov 15

Inquiry on Assigning Unique Colors and Generating Color Labels for Multiple Tracts

Thanks for the suggestion. I updated DSI Studio ro provide a different cluster color. See if the

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Inquiry on Assigning Unique Colors and Generating Color Labels for Multiple Tracts

Thanks for the suggestion. I updated DSI Studio ro provide a different cluster color. See if the

Nov 15

José Michelle Doeren, … Frank Yeh7

Nov 15

problems with alignment and WHS atlas

I updated DSI Studio again to fix another bug that does not generate tractography. If you just

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problems with alignment and WHS atlas

I updated DSI Studio again to fix another bug that does not generate tractography. If you just

Nov 15

yixin gu, Frank Yeh2

Nov 15

Sorry for the late reply. You can assign the tt.gz or trk.gz to --source to replace the location of

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Sorry for the late reply. You can assign the tt.gz or trk.gz to --source to replace the location of

Nov 15

L. Tanushree, Frank Yeh3

Nov 15

eddy correction errors

I tried it worked. Thanks alot. L. Tanushree Junior Research Fellow Department of NI&IR National

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eddy correction errors

I tried it worked. Thanks alot. L. Tanushree Junior Research Fellow Department of NI&IR National

Nov 15

L. Tanushree, Frank Yeh2

Nov 14

Multishell processing

check out --other_source at https://dsi-studio.labsolver.org/doc/cli_t1.html

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Multishell processing

check out --other_source at https://dsi-studio.labsolver.org/doc/cli_t1.html

Nov 14

鵜飼亮, Frank Yeh4

Nov 12

Question about dat-atlas"ICBM_adult.tt.gz"

Yes 鵜飼亮 <ry...@sapmed.ac.jp> 於 2024年11月12日週二上午6:31 寫道： Dear Frank Thank you for your quick

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Question about dat-atlas"ICBM_adult.tt.gz"

Yes 鵜飼亮 <ry...@sapmed.ac.jp> 於 2024年11月12日週二上午6:31 寫道： Dear Frank Thank you for your quick

Nov 12

Hannah Lindsey, … Frank Yeh8

Nov 11

grid-258 on skyra

Wonderful. I just sent it to your fran...@gmail.com address. Thanks again!! On Monday, November 11,

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grid-258 on skyra

Wonderful. I just sent it to your fran...@gmail.com address. Thanks again!! On Monday, November 11,

Nov 11

Abby Tang, Frank Yeh3

Nov 11

Inquire about the use of ROI regions

Yes, it includes both. On Mon, Nov 11, 2024 at 12:47 AM Abby Tang <abbyta...@gmail.com>

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Inquire about the use of ROI regions

Yes, it includes both. On Mon, Nov 11, 2024 at 12:47 AM Abby Tang <abbyta...@gmail.com>

Nov 11

Yuxin Yan, Frank Yeh2

Nov 6

DSI_studio loading file error

You may check out tutorial videos at https://practicum.labsolver.org/ Frank On Wed, Nov 6, 2024 at 1:

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DSI_studio loading file error

You may check out tutorial videos at https://practicum.labsolver.org/ Frank On Wed, Nov 6, 2024 at 1:

Nov 6

Pablo Vizcaíno García, Frank Yeh2

Nov 6

Quaility Check Through CMI

dsi_studio --action=qc --source=/folder_storing_src_siles On Wed, Nov 6, 2024 at 4:53 AM Pablo

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Quaility Check Through CMI

dsi_studio --action=qc --source=/folder_storing_src_siles On Wed, Nov 6, 2024 at 4:53 AM Pablo

Nov 6

Jeanette Kenley, Frank Yeh2

Nov 6

This is a new function and produces a different matrix/vector. You may check out details at https://

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This is a new function and produces a different matrix/vector. You may check out details at https://

Nov 6

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