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Amelie R
, …
Frank Yeh
6
4:47 PM
Re-using autotrack .map file
Just FYI, before, I had been trying to reuse mappings created in an older version of Chen (from May 5
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Re-using autotrack .map file
Just FYI, before, I had been trying to reuse mappings created in an older version of Chen (from May 5
4:47 PM
James Dias
4:10 PM
ROI Analysis and Saving ROI Masks
I am extracting diffusion metrics for ROIs form the JulichBrain atlas in DSI Studio. I would like to
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ROI Analysis and Saving ROI Masks
I am extracting diffusion metrics for ROIs form the JulichBrain atlas in DSI Studio. I would like to
4:10 PM
imwh...@gmail.com
, …
L. Tanushree
7
1:25 AM
registration command line
Dear Frank, Is there any suggestion to run AAL atlas for tractography for batch processing? I went
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Commandline
Suggestion
registration command line
Dear Frank, Is there any suggestion to run AAL atlas for tractography for batch processing? I went
1:25 AM
Shawn Flanagan
,
Frank Yeh
15
Oct 6
TOPUP/EDDY
Hi Frank, I am still having issues with TOPUP/EDDY - on the CPU and GPU versions. On the CPU, eddy
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TOPUP/EDDY
Hi Frank, I am still having issues with TOPUP/EDDY - on the CPU and GPU versions. On the CPU, eddy
Oct 6
Brady Williamson
,
Frank Yeh
8
Oct 5
Graph Visualization with Custom Matrix
Sorry for my mistake! I will check the code and fix it ASAP. Frank Thanks for the response, Frank! I
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Graph Visualization with Custom Matrix
Sorry for my mistake! I will check the code and fix it ASAP. Frank Thanks for the response, Frank! I
Oct 5
Ryutaro
,
Frank Yeh
5
Oct 4
Inquiry about DTI analysis using DSI Studio
Dear Frank I've completed the upload of the DICOM dataset to Dropbox. I've also attached the
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Inquiry about DTI analysis using DSI Studio
Dear Frank I've completed the upload of the DICOM dataset to Dropbox. I've also attached the
Oct 4
L. Tanushree
Oct 4
DSI studio batch processing with AAL116 atlas
In DSI studio I am trying to do batch processing to get connectivity matrices and other metrics using
unread,
DSI studio batch processing with AAL116 atlas
In DSI studio I am trying to do batch processing to get connectivity matrices and other metrics using
Oct 4
Vincenzo Fiore
,
Frank Yeh
2
Oct 3
Difference between pass region and end region in connectivity matrix
The wk3 video at https://practicum.labsolver.org/ covers the function of ROI (ie passing) and end
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Difference between pass region and end region in connectivity matrix
The wk3 video at https://practicum.labsolver.org/ covers the function of ROI (ie passing) and end
Oct 3
Борщик Борщевой
,
Frank Yeh
3
Oct 1
Correlational tractography
I fixed the issue and tested on my side. Now it should correctly obtain permuted and nonpermuted
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Correlational tractography
I fixed the issue and tested on my side. Now it should correctly obtain permuted and nonpermuted
Oct 1
Santiago Martin
,
Frank Yeh
2
Oct 1
New version has white text over white background
Thanks for reporting this issue. I updated DSI Studio and please see if the new one works for you.
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New version has white text over white background
Thanks for reporting this issue. I updated DSI Studio and please see if the new one works for you.
Oct 1
Maja Nikolova
,
Frank Yeh
2
Oct 1
Olfactory bulb Vusialization
The atlas in DSI Studio are segmentations applied to ICBM152 t1w and the results will not be the same
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Olfactory bulb Vusialization
The atlas in DSI Studio are segmentations applied to ICBM152 t1w and the results will not be the same
Oct 1
Giorgio Marcello
,
Frank Yeh
2
Sep 25
Corrections and bad slices
Not really, I would recommend checking whether neighboring DWI correlations are substantially lower(
unread,
Corrections and bad slices
Not really, I would recommend checking whether neighboring DWI correlations are substantially lower(
Sep 25
Candy CC
,
Frank Yeh
6
Sep 25
Differential Tractography__increase/decrase anisotropy
It depends on your study design. All scientific studies have control, and the exact settings defer
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Differential Tractography__increase/decrase anisotropy
It depends on your study design. All scientific studies have control, and the exact settings defer
Sep 25
Florencia Assaneo
,
Frank Yeh
2
Sep 24
CingulumR_SuperiorLongitudinalFasciculus1 nomenclature
It is SLF-I. You may find the nomenclatures at https://brain.labsolver.org/hcp_trk_atlas.html On Tue,
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CingulumR_SuperiorLongitudinalFasciculus1 nomenclature
It is SLF-I. You may find the nomenclatures at https://brain.labsolver.org/hcp_trk_atlas.html On Tue,
Sep 24
Shawn Flanagan
,
Frank Yeh
13
Sep 23
Hou Sep 18 2024 Correlational Tractography - Create a Database
Hi Frank - the new update works - I have been able to create a correlational tractography database.
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Hou Sep 18 2024 Correlational Tractography - Create a Database
Hi Frank - the new update works - I have been able to create a correlational tractography database.
Sep 23
Candy CC
, …
Frank Yeh
4
Sep 23
Differential Tractography
yes On Mon, Sep 23, 2024 at 9:53 AM Candy CC <cccan...@gmail.com> wrote: " In the
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Differential Tractography
yes On Mon, Sep 23, 2024 at 9:53 AM Candy CC <cccan...@gmail.com> wrote: " In the
Sep 23
Candy CC
, …
Frank Yeh
5
Sep 23
Differential Tractography
There is a history behind this. GQI calculates quantitative anisotropy QA, which scales with spin
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Differential Tractography
There is a history behind this. GQI calculates quantitative anisotropy QA, which scales with spin
Sep 23
Candy CC
,
Frank Yeh
4
Sep 23
Differential Tractography, __'rigid body' transformation in DSI Studio
Yes On Mon, Sep 23, 2024 at 9:34 AM Candy CC <cccan...@gmail.com> wrote: > > So QSDR is
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Differential Tractography, __'rigid body' transformation in DSI Studio
Yes On Mon, Sep 23, 2024 at 9:34 AM Candy CC <cccan...@gmail.com> wrote: > > So QSDR is
Sep 23
Candy CC
,
Frank Yeh
4
Sep 23
Differential Tractography——choose GQI? or QSDR
What are the reasons for recommending the use of QSDR? Is it because they are animals? Yes, and the
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Differential Tractography——choose GQI? or QSDR
What are the reasons for recommending the use of QSDR? Is it because they are animals? Yes, and the
Sep 23
Candy CC
,
Frank Yeh
2
Sep 23
Differential Tractography
Currently there is no built-in way to process them all at once. If you can handy in programming using
unread,
Differential Tractography
Currently there is no built-in way to process them all at once. If you can handy in programming using
Sep 23
Candy CC
,
Frank Yeh
2
Sep 23
Differential Tractography
In the original paper, it is the number of tracts, which is just a simulated number of streamline.
unread,
Differential Tractography
In the original paper, it is the number of tracts, which is just a simulated number of streamline.
Sep 23
Candy CC
,
Frank Yeh
2
Sep 23
Differential Tractography,
> When selecting QSDR, anisotropy will not be calculated? QSDR also calculates anisotropy. Just
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Differential Tractography,
> When selecting QSDR, anisotropy will not be calculated? QSDR also calculates anisotropy. Just
Sep 23
PALOMA FRAUTSCHI
,
Frank Yeh
6
Sep 22
Error message about missing files
There are max-12,13 for Hou. Have you tried them? On Sun, Sep 22, 2024 at 1:47 PM 'PALOMA
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Error message about missing files
There are max-12,13 for Hou. Have you tried them? On Sun, Sep 22, 2024 at 1:47 PM 'PALOMA
Sep 22
Heather Whittaker
,
Frank Yeh
2
Sep 21
Correlational tractography t-values
Hi Heather, Glad to see you are using very advanced function, and I will do my best to assist you. (
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Correlational tractography t-values
Hi Heather, Glad to see you are using very advanced function, and I will do my best to assist you. (
Sep 21
Yunjia Ni
,
Frank Yeh
5
Sep 21
Re: loading registration in DSI Studio
The input text file needs to have 12 space-separated values corresponding to the 4-by-3
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Re: loading registration in DSI Studio
The input text file needs to have 12 space-separated values corresponding to the 4-by-3
Sep 21
高橋航来
,
Frank Yeh
7
Sep 21
CLI database creation error
You may try the GUI interface to create the database. If possible, please post the complete message.
unread,
CLI database creation error
You may try the GUI interface to create the database. If possible, please post the complete message.
Sep 21
Shawn Flanagan
,
Frank Yeh
6
Sep 20
Population-Averaged Template
Hi Frank - The population average template creator now works! Thank you. On Friday, September 20,
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Population-Averaged Template
Hi Frank - The population average template creator now works! Thank you. On Friday, September 20,
Sep 20
James Lee
,
Frank Yeh
2
Sep 19
SIEMENS VIDA DTI data pre-processed with dcm2niix
DSI Studio should be able to take those dcm2niix outputs. Best, Frank On Thu, Sep 19, 2024 at 12:16
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SIEMENS VIDA DTI data pre-processed with dcm2niix
DSI Studio should be able to take those dcm2niix outputs. Best, Frank On Thu, Sep 19, 2024 at 12:16
Sep 19
Shawn Flanagan
,
Frank Yeh
6
Sep 18
Custom Atlas ROI Connectivity Matrix Failure
The Hou version is updated to fix this bug. Thanks again for reporting! Best regards, Frank
unread,
Custom Atlas ROI Connectivity Matrix Failure
The Hou version is updated to fix this bug. Thanks again for reporting! Best regards, Frank
Sep 18
Shawn Flanagan
,
Frank Yeh
2
Sep 16
Population-Averaged Template
You may try recreating fib files again (try one or two files) and see it this solves the problem.
unread,
Population-Averaged Template
You may try recreating fib files again (try one or two files) and see it this solves the problem.
Sep 16