DSI Studio

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Amelie R, … Frank Yeh6

4:47 PM

Re-using autotrack .map file

Just FYI, before, I had been trying to reuse mappings created in an older version of Chen (from May 5

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Re-using autotrack .map file

Just FYI, before, I had been trying to reuse mappings created in an older version of Chen (from May 5

4:47 PM

4:10 PM

ROI Analysis and Saving ROI Masks

I am extracting diffusion metrics for ROIs form the JulichBrain atlas in DSI Studio. I would like to

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ROI Analysis and Saving ROI Masks

I am extracting diffusion metrics for ROIs form the JulichBrain atlas in DSI Studio. I would like to

4:10 PM

imwh...@gmail.com, … L. Tanushree7

1:25 AM

registration command line

Dear Frank, Is there any suggestion to run AAL atlas for tractography for batch processing? I went

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registration command line

Dear Frank, Is there any suggestion to run AAL atlas for tractography for batch processing? I went

1:25 AM

Shawn Flanagan, Frank Yeh15

Oct 6

Hi Frank, I am still having issues with TOPUP/EDDY - on the CPU and GPU versions. On the CPU, eddy

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Hi Frank, I am still having issues with TOPUP/EDDY - on the CPU and GPU versions. On the CPU, eddy

Oct 6

Brady Williamson, Frank Yeh8

Oct 5

Graph Visualization with Custom Matrix

Sorry for my mistake! I will check the code and fix it ASAP. Frank Thanks for the response, Frank! I

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Graph Visualization with Custom Matrix

Sorry for my mistake! I will check the code and fix it ASAP. Frank Thanks for the response, Frank! I

Oct 5

Ryutaro, Frank Yeh5

Oct 4

Inquiry about DTI analysis using DSI Studio

Dear Frank I've completed the upload of the DICOM dataset to Dropbox. I've also attached the

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Inquiry about DTI analysis using DSI Studio

Dear Frank I've completed the upload of the DICOM dataset to Dropbox. I've also attached the

Oct 4

Oct 4

DSI studio batch processing with AAL116 atlas

In DSI studio I am trying to do batch processing to get connectivity matrices and other metrics using

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DSI studio batch processing with AAL116 atlas

In DSI studio I am trying to do batch processing to get connectivity matrices and other metrics using

Oct 4

Vincenzo Fiore, Frank Yeh2

Oct 3

Difference between pass region and end region in connectivity matrix

The wk3 video at https://practicum.labsolver.org/ covers the function of ROI (ie passing) and end

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Difference between pass region and end region in connectivity matrix

The wk3 video at https://practicum.labsolver.org/ covers the function of ROI (ie passing) and end

Oct 3

Борщик Борщевой, Frank Yeh3

Oct 1

Correlational tractography

I fixed the issue and tested on my side. Now it should correctly obtain permuted and nonpermuted

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Correlational tractography

I fixed the issue and tested on my side. Now it should correctly obtain permuted and nonpermuted

Oct 1

Santiago Martin, Frank Yeh2

Oct 1

New version has white text over white background

Thanks for reporting this issue. I updated DSI Studio and please see if the new one works for you.

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New version has white text over white background

Thanks for reporting this issue. I updated DSI Studio and please see if the new one works for you.

Oct 1

Maja Nikolova, Frank Yeh2

Oct 1

Olfactory bulb Vusialization

The atlas in DSI Studio are segmentations applied to ICBM152 t1w and the results will not be the same

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Olfactory bulb Vusialization

The atlas in DSI Studio are segmentations applied to ICBM152 t1w and the results will not be the same

Oct 1

Giorgio Marcello, Frank Yeh2

Sep 25

Corrections and bad slices

Not really, I would recommend checking whether neighboring DWI correlations are substantially lower(

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Corrections and bad slices

Not really, I would recommend checking whether neighboring DWI correlations are substantially lower(

Sep 25

Candy CC, Frank Yeh6

Sep 25

Differential Tractography__increase/decrase anisotropy

It depends on your study design. All scientific studies have control, and the exact settings defer

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Differential Tractography__increase/decrase anisotropy

It depends on your study design. All scientific studies have control, and the exact settings defer

Sep 25

Florencia Assaneo, Frank Yeh2

Sep 24

CingulumR_SuperiorLongitudinalFasciculus1 nomenclature

It is SLF-I. You may find the nomenclatures at https://brain.labsolver.org/hcp_trk_atlas.html On Tue,

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CingulumR_SuperiorLongitudinalFasciculus1 nomenclature

It is SLF-I. You may find the nomenclatures at https://brain.labsolver.org/hcp_trk_atlas.html On Tue,

Sep 24

Shawn Flanagan, Frank Yeh13

Sep 23

Hou Sep 18 2024 Correlational Tractography - Create a Database

Hi Frank - the new update works - I have been able to create a correlational tractography database.

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Hou Sep 18 2024 Correlational Tractography - Create a Database

Hi Frank - the new update works - I have been able to create a correlational tractography database.

Sep 23

Candy CC, … Frank Yeh4

Sep 23

Differential Tractography

yes On Mon, Sep 23, 2024 at 9:53 AM Candy CC <cccan...@gmail.com> wrote: " In the

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Differential Tractography

yes On Mon, Sep 23, 2024 at 9:53 AM Candy CC <cccan...@gmail.com> wrote: " In the

Sep 23

Candy CC, … Frank Yeh5

Sep 23

Differential Tractography

There is a history behind this. GQI calculates quantitative anisotropy QA, which scales with spin

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Differential Tractography

There is a history behind this. GQI calculates quantitative anisotropy QA, which scales with spin

Sep 23

Candy CC, Frank Yeh4

Sep 23

Differential Tractography, __'rigid body' transformation in DSI Studio

Yes On Mon, Sep 23, 2024 at 9:34 AM Candy CC <cccan...@gmail.com> wrote: > > So QSDR is

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Differential Tractography, __'rigid body' transformation in DSI Studio

Yes On Mon, Sep 23, 2024 at 9:34 AM Candy CC <cccan...@gmail.com> wrote: > > So QSDR is

Sep 23

Candy CC, Frank Yeh4

Sep 23

Differential Tractography——choose GQI？ or QSDR

What are the reasons for recommending the use of QSDR? Is it because they are animals? Yes, and the

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Differential Tractography——choose GQI？ or QSDR

What are the reasons for recommending the use of QSDR? Is it because they are animals? Yes, and the

Sep 23

Candy CC, Frank Yeh2

Sep 23

Differential Tractography

Currently there is no built-in way to process them all at once. If you can handy in programming using

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Differential Tractography

Currently there is no built-in way to process them all at once. If you can handy in programming using

Sep 23

Candy CC, Frank Yeh2

Sep 23

Differential Tractography

In the original paper, it is the number of tracts, which is just a simulated number of streamline.

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Differential Tractography

In the original paper, it is the number of tracts, which is just a simulated number of streamline.

Sep 23

Candy CC, Frank Yeh2

Sep 23

Differential Tractography,

> When selecting QSDR, anisotropy will not be calculated? QSDR also calculates anisotropy. Just

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Differential Tractography,

> When selecting QSDR, anisotropy will not be calculated? QSDR also calculates anisotropy. Just

Sep 23

PALOMA FRAUTSCHI, Frank Yeh6

Sep 22

Error message about missing files

There are max-12,13 for Hou. Have you tried them? On Sun, Sep 22, 2024 at 1:47 PM 'PALOMA

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Error message about missing files

There are max-12,13 for Hou. Have you tried them? On Sun, Sep 22, 2024 at 1:47 PM 'PALOMA

Sep 22

Heather Whittaker, Frank Yeh2

Sep 21

Correlational tractography t-values

Hi Heather, Glad to see you are using very advanced function, and I will do my best to assist you. (

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Correlational tractography t-values

Hi Heather, Glad to see you are using very advanced function, and I will do my best to assist you. (

Sep 21

Yunjia Ni, Frank Yeh5

Sep 21

Re: loading registration in DSI Studio

The input text file needs to have 12 space-separated values corresponding to the 4-by-3

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Re: loading registration in DSI Studio

The input text file needs to have 12 space-separated values corresponding to the 4-by-3

Sep 21

高橋航来, Frank Yeh7

Sep 21

CLI database creation error

You may try the GUI interface to create the database. If possible, please post the complete message.

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CLI database creation error

You may try the GUI interface to create the database. If possible, please post the complete message.

Sep 21

Shawn Flanagan, Frank Yeh6

Sep 20

Population-Averaged Template

Hi Frank - The population average template creator now works! Thank you. On Friday, September 20,

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Population-Averaged Template

Hi Frank - The population average template creator now works! Thank you. On Friday, September 20,

Sep 20

James Lee, Frank Yeh2

Sep 19

SIEMENS VIDA DTI data pre-processed with dcm2niix

DSI Studio should be able to take those dcm2niix outputs. Best, Frank On Thu, Sep 19, 2024 at 12:16

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SIEMENS VIDA DTI data pre-processed with dcm2niix

DSI Studio should be able to take those dcm2niix outputs. Best, Frank On Thu, Sep 19, 2024 at 12:16

Sep 19

Shawn Flanagan, Frank Yeh6

Sep 18

Custom Atlas ROI Connectivity Matrix Failure

The Hou version is updated to fix this bug. Thanks again for reporting! Best regards, Frank

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Custom Atlas ROI Connectivity Matrix Failure

The Hou version is updated to fix this bug. Thanks again for reporting! Best regards, Frank

Sep 18

Shawn Flanagan, Frank Yeh2

Sep 16

Population-Averaged Template

You may try recreating fib files again (try one or two files) and see it this solves the problem.

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Population-Averaged Template

You may try recreating fib files again (try one or two files) and see it this solves the problem.

Sep 16

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