Reconstruction quality control issue -- low R2

[Lizzie Hodgdon]

Hello, 

I am trying to run a group connectometry analysis with DSI Studio and I ran into an issue with quality control of some of my reconstructed data. 

After running the reconstruction of my .src files to .fib, I noticed the R2 for many of my subjects was low (<60). Based on the documentation of potential issues, this may be due to slices being flipped in the Z direction. It indicates that there is a way to “Edit” the data in the reconstruction window such that the slices would be flipped to the correct orientation, however I have not been able to find this option on the DSI GUI. I have the newest version (6/15/21). Is this editing option to flip the slices still available in the updated DSI Studio?

I have attached images of my view of the reconstruction window for reference. 

Any help is greatly appreciated!

Thanks so much, 

Elizabeth Hodgdon

[Frank Yeh]

Yes, it is still available. Please follow the steps here:

(1) find all the SRC.GZ files that have this flip z issue
(2) [step T2 Reconstruction] select all SRC.GZ files in (1)
(3) On the top menu, select [Edit][Image flip Z]
(4) [Step T2b(1)] select QSDR
(5) [Step T2b(2)] Check [Output ODFs]
(6) Click [Run Reconstruction]

DSI Studio should apply the same process to all SRC files.

If there is any question using this function, please let me know.

Best regards,
Frank

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[Lizzie Hodgdon]

Thank you, Frank, for these directions. I was able to successfully flip my images. 

However, now DSI Studio has been crashing during my connectometry analysis, typically when the program has almost completed analyzing my data. 

Here's an example of a crash report I received (all appear seem to be the same error):

Process:               dsi_studio [752]

Path:                  /Applications/dsi_studio.app/Contents/MacOS/dsi_studio

Identifier:            frank.dsi-studio

Version:               0

Code Type:             X86-64 (Native)

Parent Process:        ??? [1]

Responsible:           dsi_studio [752]

User ID:               501

Date/Time:             2021-06-19 12:02:48.200 -0700

OS Version:            Mac OS X 10.15.7 (19H114)

Report Version:        12

Anonymous UUID:        FA1F4FE4-426D-BD07-A300-F829427F220A

Time Awake Since Boot: 7600 seconds

System Integrity Protection: enabled

Crashed Thread:        3

Exception Type:        EXC_CRASH (SIGABRT)

Exception Codes:       0x0000000000000000, 0x0000000000000000

Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:

abort() called

terminating with uncaught exception of type NSException

*** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'NSWindow drag regions should only be invalidated on the Main Thread!'

Application Specific Backtrace 1:

0   CoreFoundation                      0x00007fff35dd7727 __exceptionPreprocess + 250

1   libobjc.A.dylib                     0x00007fff6ed1fa9e objc_exception_throw + 48

2   CoreFoundation                      0x00007fff35e000ac -[NSException raise] + 9

3   AppKit                              0x00007fff32fe85ec -[NSWindow(NSWindow_Theme) _postWindowNeedsToResetDragMarginsUnlessPostingDisabled] + 310

4   AppKit                              0x00007fff32fd0052 -[NSWindow _initContent:styleMask:backing:defer:contentView:] + 1416

5   AppKit                              0x00007fff331b0db5 -[NSPanel _initContent:styleMask:backing:defer:contentView:] + 50

6   AppKit                              0x00007fff32fcfac3 -[NSWindow initWithContentRect:styleMask:backing:defer:] + 42

7   AppKit                              0x00007fff331b0d6a -[NSPanel initWithContentRect:styleMask:backing:defer:] + 64

8   AppKit                              0x00007fff33308a28 -[NSWindow initWithContentRect:styleMask:backing:defer:screen:] + 52

9   libqcocoa.dylib                     0x0000000111f791b5 qt_plugin_instance + 149909

10  libqcocoa.dylib                     0x0000000111f675a0 qt_plugin_instance + 77184

11  libqcocoa.dylib                     0x0000000111f611b2 qt_plugin_instance + 51602

12  libqcocoa.dylib                     0x0000000111f60c3b qt_plugin_instance + 50203

13  QtGui                               0x000000010f834dbc _ZN14QWindowPrivate6createEby + 140

14  QtWidgets                           0x000000010f287f61 _ZN14QWidgetPrivate10create_sysEybb + 1201

15  QtWidgets                           0x000000010f286c16 _ZN7QWidget6createEybb + 326

16  QtWidgets                           0x000000010f29a013 _ZN14QWidgetPrivate10setVisibleEb + 195

17  QtWidgets                           0x000000010f45c05d _ZN7QDialog10setVisibleEb + 125

18  dsi_studio                          0x000000010ebc58c6 _Z12check_createv + 390

19  dsi_studio                          0x000000010ebc5d29 _Z10check_progjj + 41

20  dsi_studio                          0x000000010ed146a0 _Z6trk2ttPKcS0_ + 5504

21  dsi_studio                          0x000000010ed1dadb _ZN10TractModel19save_tracts_to_fileEPKc + 4651

22  dsi_studio                          0x000000010ee65d19 _ZN28group_connectometry_analysis27run_permutation_multithreadEjjj + 8313

23  dsi_studio                          0x000000010ee7143c _ZN28group_connectometry_analysis15generate_reportERNSt3__112basic_stringIcNS0_11char_traitsIcEENS0_9allocatorIcEEEE + 30060

24  dsi_studio                          0x000000010ee714de _ZN28group_connectometry_analysis15generate_reportERNSt3__112basic_stringIcNS0_11char_traitsIcEENS0_9allocatorIcEEEE + 30222

25  libsystem_pthread.dylib             0x00007fff700c8109 _pthread_start + 148

26  libsystem_pthread.dylib             0x00007fff700c3b8b thread_start + 15

Thread 0:: Dispatch queue: com.apple.main-thread

0   libsystem_kernel.dylib        0x00007fff70000dfa mach_msg_trap + 10

1   libsystem_kernel.dylib        0x00007fff70001170 mach_msg + 60

2   com.apple.CoreFoundation      0x00007fff35d5ba27 __CFRunLoopServiceMachPort + 247

3   com.apple.CoreFoundation      0x00007fff35d5a4e1 __CFRunLoopRun + 1329

4   com.apple.CoreFoundation      0x00007fff35d59953 CFRunLoopRunSpecific + 466

5   com.apple.HIToolbox            0x00007fff34974abd RunCurrentEventLoopInMode + 292

6   com.apple.HIToolbox            0x00007fff349747d5 ReceiveNextEventCommon + 584

7   com.apple.HIToolbox            0x00007fff34974579 _BlockUntilNextEventMatchingListInModeWithFilter + 64

8   com.apple.AppKit              0x00007fff32fba039 _DPSNextEvent + 883

9   com.apple.AppKit              0x00007fff32fb8880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352

10  com.apple.AppKit              0x00007fff32faa58e -[NSApplication run] + 658

11  libqcocoa.dylib                0x0000000111f7c0ab 0x111f4c000 + 196779

12  org.qt-project.QtCore          0x000000010ff1e55f QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 431

13  org.qt-project.QtCore          0x000000010ff23502 QCoreApplication::exec() + 130

14  frank.dsi-studio              0x000000010eb3f38f main + 1407

15  libdyld.dylib                  0x00007fff6febfcc9 start + 1

Thread 1:: com.apple.NSEventThread

0   libsystem_kernel.dylib        0x00007fff70000dfa mach_msg_trap + 10

1   libsystem_kernel.dylib        0x00007fff70001170 mach_msg + 60

2   com.apple.CoreFoundation      0x00007fff35d5ba27 __CFRunLoopServiceMachPort + 247

3   com.apple.CoreFoundation      0x00007fff35d5a4e1 __CFRunLoopRun + 1329

4   com.apple.CoreFoundation      0x00007fff35d59953 CFRunLoopRunSpecific + 466

5   com.apple.AppKit              0x00007fff3315b954 _NSEventThread + 132

6   libsystem_pthread.dylib        0x00007fff700c8109 _pthread_start + 148

7   libsystem_pthread.dylib        0x00007fff700c3b8b thread_start + 15

Thread 2:

0   libsystem_pthread.dylib        0x00007fff700c3b68 start_wqthread + 0

Thread 3 Crashed:

0   libsystem_kernel.dylib        0x00007fff7000733a __pthread_kill + 10

1   libsystem_pthread.dylib        0x00007fff700c7e60 pthread_kill + 430

2   libsystem_c.dylib              0x00007fff6ff8e808 abort + 120

3   libc++abi.dylib                0x00007fff6d1f7458 abort_message + 231

4   libc++abi.dylib                0x00007fff6d1e88bf demangling_terminate_handler() + 262

5   libobjc.A.dylib                0x00007fff6ed21a57 _objc_terminate() + 96

6   libc++abi.dylib                0x00007fff6d1f6887 std::__terminate(void (*)()) + 8

7   libc++abi.dylib                0x00007fff6d1f6829 std::terminate() + 41

8   frank.dsi-studio              0x000000010ed1dadb TractModel::save_tracts_to_file(char const*) + 4651

9   frank.dsi-studio              0x000000010ee65d19 group_connectometry_analysis::run_permutation_multithread(unsigned int, unsigned int, unsigned int) + 8313

10  frank.dsi-studio              0x000000010ee7143c 0x10eb2f000 + 3417148

11  frank.dsi-studio              0x000000010ee714de 0x10eb2f000 + 3417310

12  libsystem_pthread.dylib        0x00007fff700c8109 _pthread_start + 148

13  libsystem_pthread.dylib        0x00007fff700c3b8b thread_start + 15

Thread 4:

0   libsystem_pthread.dylib        0x00007fff700c3b68 start_wqthread + 0

Thread 3 crashed with X86 Thread State (64-bit):

  rax: 0x0000000000000000  rbx: 0x0000700003a2e000  rcx: 0x0000700003a2c388  rdx: 0x0000000000000000

  rdi: 0x000000000000e3af  rsi: 0x0000000000000006  rbp: 0x0000700003a2c3b0  rsp: 0x0000700003a2c388

   r8: 0x0000700003a2c250   r9: 0x0000700003a2c420  r10: 0x0000700003a2e000  r11: 0x0000000000000246

  r12: 0x000000000000e3af  r13: 0x0000003000000008  r14: 0x0000000000000006  r15: 0x0000000000000016

  rip: 0x00007fff7000733a  rfl: 0x0000000000000246  cr2: 0x00007fff95febcc8

  

Logical CPU:     0

Error Code:      0x02000148

Trap Number:     133

Binary Images:

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       0x113a3a000 -        0x113a3effb +libqtga.dylib (0) <22862CC6-523C-3B7F-822E-80B0B7FA2E08> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqtga.dylib

       0x113a42000 -        0x113aa5ff3 +libqtiff.dylib (0) <CFDE6D59-F15D-3F9B-9DB5-794EDBC5179E> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqtiff.dylib

       0x113aad000 -        0x113ab0ff3 +libqwbmp.dylib (0) <82459E5F-9FF4-3643-81FB-6AEEC9134D59> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqwbmp.dylib

       0x113ab4000 -        0x113b48ff3 +libqwebp.dylib (0) <EA127AF0-2F8F-3E9B-AF50-D9FA9E3449CC> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqwebp.dylib

       0x114016000 -        0x114019047  libobjc-trampolines.dylib (787.1) <571C6A14-9E0E-3139-B82D-A1A3D46F2C9C> /usr/lib/libobjc-trampolines.dylib

       0x1145be000 -        0x11464ff47  dyld (750.6) <F58DDECD-315C-3B7C-8162-A5E8E1D62FE3> /usr/lib/dyld

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    0x7fff318e8000 -     0x7fff318e8fff  com.apple.Accelerate (1.11 - Accelerate 1.11) <C1FB2338-2D52-3884-BED3-071A82B1FD77> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate

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    0x7fff34c3e000 -     0x7fff34c43ff7  com.apple.ImageCapture (9.0 - 1600.65) <1A1F320E-3E85-3F3D-8AE0-B238C4E92D40> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture

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    0x7fff36f1a000 -     0x7fff36ff5ffc  com.apple.CoreMedia (1.0 - 2625.9) <A3FF3AFC-8C1C-36E5-9179-66D8F075EE35> /System/Library/Frameworks/CoreMedia.framework/Versions/A/CoreMedia

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    0x7fff37d0d000 -     0x7fff37d51ffb  com.apple.CoreVideo (1.8 - 344.3) <5314E70D-325F-3E98-99FC-00FDF520747E> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo

    0x7fff37d52000 -     0x7fff37ddfffc  com.apple.framework.CoreWLAN (13.0 - 1601.2) <6223BFD5-D451-3DE9-90F6-F609AC0B0027> /System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN

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    0x7fff38d86000 -     0x7fff38d89fff  libGIF.dylib (1976.11.4) <B8C616A3-2A91-3E9B-B7E4-78A84D6698B9> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib

    0x7fff38d8a000 -     0x7fff38e43ff7  libJP2.dylib (1976.11.4) <28143F5F-47B2-3B8C-8BEF-DA7886DF3ABB> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib

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    0x7fff3a6be000 -     0x7fff3a6befff  libHeimdalProxy.dylib (77) <0A2905EE-9533-3345-AF9B-AAC71513BDFD> /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib

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    0x7fff3b39a000 -     0x7fff3b424fe2  com.apple.MetalPerformanceShaders.MPSImage (1.0 - 1) <B424FE0C-6E90-3BFA-A6E7-DD86C735AE90> /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSImage.framework/Versions/A/MPSImage

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    0x7fff3b5c0000 -     0x7fff3b60fff4  com.apple.MetalPerformanceShaders.MPSRayIntersector (1.0 - 1) <B0B591F8-6875-351E-867F-8EB3CD38CD52> /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSRayIntersector.framework/Versions/A/MPSRayIntersector

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    0x7fff65b5f000 -     0x7fff65b6dffb  com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) <4D6CAC2A-151B-3BBE-BDB7-E2BE72128691> /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore

    0x7fff66249000 -     0x7fff6628aff9  com.apple.StreamingZip (1.0 - 1) <72CA32F8-4C96-3264-A655-623329EB3A28> /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip

    0x7fff663a1000 -     0x7fff663aaff7  com.apple.SymptomDiagnosticReporter (1.0 - 1238.120.2) <C3D66901-7E31-3FDB-BD7A-441EB0520D1D> /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter

    0x7fff66661000 -     0x7fff66671ff3  com.apple.TCC (1.0 - 1) <C9EB52E3-099B-3597-9623-067C403FA525> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC

    0x7fff66b96000 -     0x7fff66c5cff0  com.apple.TextureIO (3.10.9 - 3.10.9) <EEDAB753-329A-396A-8119-5BEDF7DB5A56> /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO

    0x7fff66e2c000 -     0x7fff67084ff0  com.apple.UIFoundation (1.0 - 662) <EC55B9E5-7E62-380A-9AB1-FC7BEF663653> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation

    0x7fff67cfa000 -     0x7fff67d1affc  com.apple.UserManagement (1.0 - 1) <9F00880E-6EA6-3684-B208-455E14EC07C8> /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement

    0x7fff68ac6000 -     0x7fff68bb1ff2  com.apple.ViewBridge (467 - 467) <09E8FFB8-4DA1-3E80-8E19-927A2D987BF9> /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge

    0x7fff68d57000 -     0x7fff68d58fff  com.apple.WatchdogClient.framework (1.0 - 67.120.2) <FFA17DA1-F6DD-34D3-A708-1F73C8BA7EA7> /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient

    0x7fff69988000 -     0x7fff6998bffa  com.apple.dt.XCTTargetBootstrap (1.0 - 16091) <D459D628-58C5-39A6-B7E8-B691CBEECEC1> /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap

    0x7fff69a05000 -     0x7fff69a13ff5  com.apple.audio.caulk (1.0 - 32.3) <06D695EA-E2BC-31E4-9816-9C12542BA744> /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk

    0x7fff69d55000 -     0x7fff69d57ff3  com.apple.loginsupport (1.0 - 1) <12F77885-27DC-3837-9CE9-A25EBA75F833> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport

    0x7fff69d58000 -     0x7fff69d6bffd  com.apple.login (3.0 - 3.0) <C68367BA-2225-31DD-B2D8-16AC0A44421F> /System/Library/PrivateFrameworks/login.framework/Versions/A/login

    0x7fff6c83b000 -     0x7fff6c86effa  libAudioToolboxUtility.dylib (1104.95) <E534364D-5E5F-37BA-9FB6-FFFF1416820C> /usr/lib/libAudioToolboxUtility.dylib

    0x7fff6c875000 -     0x7fff6c8a9fff  libCRFSuite.dylib (48) <5E5DE3CB-30DD-34DC-AEF8-FE8536A85E96> /usr/lib/libCRFSuite.dylib

    0x7fff6c8ac000 -     0x7fff6c8b6fff  libChineseTokenizer.dylib (34) <7F0DA183-1796-315A-B44A-2C234C7C50BE> /usr/lib/libChineseTokenizer.dylib

    0x7fff6c942000 -     0x7fff6c944ff7  libDiagnosticMessagesClient.dylib (112) <C94F3B7B-1854-38EB-9778-834501C53B3F> /usr/lib/libDiagnosticMessagesClient.dylib

    0x7fff6c98a000 -     0x7fff6cb41ffb  libFosl_dynamic.dylib (100.4) <737573B2-190A-3BA1-8220-807AD0A2CE5E> /usr/lib/libFosl_dynamic.dylib

    0x7fff6cb68000 -     0x7fff6cb6eff3  libIOReport.dylib (54) <75D177C4-BAD7-3285-B8E1-3019F49B3178> /usr/lib/libIOReport.dylib

    0x7fff6cc50000 -     0x7fff6cc57fff  libMatch.1.dylib (36) <5C6F3971-9D9E-3630-BDB6-60BFC5A665E0> /usr/lib/libMatch.1.dylib

    0x7fff6cc86000 -     0x7fff6cca6ff7  libMobileGestalt.dylib (826.140.5) <2BE94E6A-FA61-312F-84A1-F764D71B7E39> /usr/lib/libMobileGestalt.dylib

    0x7fff6ce18000 -     0x7fff6ce19fff  libSystem.B.dylib (1281.100.1) <8E6AD412-91E7-36FC-A6FD-C13B06A4952A> /usr/lib/libSystem.B.dylib

    0x7fff6cea6000 -     0x7fff6cea7fff  libThaiTokenizer.dylib (3) <4F4ADE99-0D09-3223-B7C0-C407AB6DE8DC> /usr/lib/libThaiTokenizer.dylib

    0x7fff6cebf000 -     0x7fff6ced5fff  libapple_nghttp2.dylib (1.39.2) <07FEC48A-87CF-32A3-8194-FA70B361713A> /usr/lib/libapple_nghttp2.dylib

    0x7fff6cf0a000 -     0x7fff6cf7cff7  libarchive.2.dylib (72.140.2) <F9EA2883-5D5C-3FA6-B3F8-C5031BF88ABD> /usr/lib/libarchive.2.dylib

    0x7fff6cf7d000 -     0x7fff6d0acfed  libate.dylib (3.0.1) <DE609B9D-AD02-34FE-A91B-464ECDECC73A> /usr/lib/libate.dylib

    0x7fff6d0b0000 -     0x7fff6d0b0ff3  libauto.dylib (187) <B6124448-7690-34AE-8939-ED84AAC630CE> /usr/lib/libauto.dylib

    0x7fff6d176000 -     0x7fff6d186ffb  libbsm.0.dylib (60.100.1) <00BFFB9A-2FFE-3C24-896A-251BC61917FD> /usr/lib/libbsm.0.dylib

    0x7fff6d187000 -     0x7fff6d193fff  libbz2.1.0.dylib (44) <14CC4988-B6D4-3879-AFC2-9A0DDC6388DE> /usr/lib/libbz2.1.0.dylib

    0x7fff6d194000 -     0x7fff6d1e6fff  libc++.1.dylib (902.1) <59A8239F-C28A-3B59-B8FA-11340DC85EDC> /usr/lib/libc++.1.dylib

    0x7fff6d1e7000 -     0x7fff6d1fcffb  libc++abi.dylib (902) <E692F14F-C65E-303B-9921-BB7E97D77855> /usr/lib/libc++abi.dylib

    0x7fff6d1fd000 -     0x7fff6d1fdfff  libcharset.1.dylib (59) <72447768-9244-39AB-8E79-2FA14EC0AD33> /usr/lib/libcharset.1.dylib

    0x7fff6d1fe000 -     0x7fff6d20ffff  libcmph.dylib (8) <E72A20DB-2E86-378D-A237-EB9A1370F989> /usr/lib/libcmph.dylib

    0x7fff6d210000 -     0x7fff6d228fd7  libcompression.dylib (87) <3938CD1B-E242-3474-8A7F-9F66D316AFF3> /usr/lib/libcompression.dylib

    0x7fff6d502000 -     0x7fff6d518ff7  libcoretls.dylib (167) <770A5B96-936E-34E3-B006-B1CEC299B5A5> /usr/lib/libcoretls.dylib

    0x7fff6d519000 -     0x7fff6d51afff  libcoretls_cfhelpers.dylib (167) <940BF370-FD0C-30A8-AA05-FF48DA44FA4C> /usr/lib/libcoretls_cfhelpers.dylib

    0x7fff6dad7000 -     0x7fff6db36ff7  libcups.2.dylib (483.7) <821ED293-B7B3-3B37-88C9-7B6CA91DA7FA> /usr/lib/libcups.2.dylib

    0x7fff6dc40000 -     0x7fff6dc40fff  libenergytrace.dylib (21) <162DFCC0-8F48-3DD0-914F-FA8653E27B26> /usr/lib/libenergytrace.dylib

    0x7fff6dc41000 -     0x7fff6dc59fff  libexpat.1.dylib (19.60.2) <FED7C38B-92D8-342D-AED7-871B12D1F7E7> /usr/lib/libexpat.1.dylib

    0x7fff6dc67000 -     0x7fff6dc69fff  libfakelink.dylib (149.1) <36146CB2-E6A5-37BB-9EE8-1B4034D8F3AD> /usr/lib/libfakelink.dylib

    0x7fff6dc78000 -     0x7fff6dc7dfff  libgermantok.dylib (24) <D2AE5AC0-EDCE-3216-B8C9-CF59292A545F> /usr/lib/libgermantok.dylib

    0x7fff6dc7e000 -     0x7fff6dc87ff7  libheimdal-asn1.dylib (564.140.1) <0AC6FB62-2B0F-3E93-A931-E4DC4B1D757A> /usr/lib/libheimdal-asn1.dylib

    0x7fff6dc88000 -     0x7fff6dd78fff  libiconv.2.dylib (59) <18311A67-E4EF-3CC7-95B3-C0EDEE3A282F> /usr/lib/libiconv.2.dylib

    0x7fff6dd79000 -     0x7fff6dfd0fff  libicucore.A.dylib (64260.0.1) <8AC2CB07-E7E0-340D-A849-186FA1F27251> /usr/lib/libicucore.A.dylib

    0x7fff6dfe8000 -     0x7fff6dfe9fff  liblangid.dylib (133) <30CFC08C-EF36-3CF5-8AEA-C1CB070306B7> /usr/lib/liblangid.dylib

    0x7fff6dfea000 -     0x7fff6e002ff3  liblzma.5.dylib (16) <C131EF18-2CDD-3271-8A30-A8760D4FE166> /usr/lib/liblzma.5.dylib

    0x7fff6e01a000 -     0x7fff6e0c1ff7  libmecab.dylib (883.11) <0D5BFD01-D4A7-3C8D-AA69-C329C1A69792> /usr/lib/libmecab.dylib

    0x7fff6e0c2000 -     0x7fff6e324ff1  libmecabra.dylib (883.11) <E31DE74D-1B88-377F-ACD3-D789D29C3AE7> /usr/lib/libmecabra.dylib

    0x7fff6e691000 -     0x7fff6e6c0fff  libncurses.5.4.dylib (57) <995DFEEA-40F3-377F-B73D-D02AC59D591F> /usr/lib/libncurses.5.4.dylib

    0x7fff6e7f0000 -     0x7fff6ec6cff5  libnetwork.dylib (1880.120.4) <BA294A54-F309-398D-B308-F97032AFF555> /usr/lib/libnetwork.dylib

    0x7fff6ed0d000 -     0x7fff6ed3ffde  libobjc.A.dylib (787.1) <265783CE-6D74-36C9-B6D2-95D3910199EC> /usr/lib/libobjc.A.dylib

    0x7fff6ed52000 -     0x7fff6ed56fff  libpam.2.dylib (25.100.1) <0502F395-8EE6-3D2A-9239-06FD5622E19E> /usr/lib/libpam.2.dylib

    0x7fff6ed59000 -     0x7fff6ed8fff7  libpcap.A.dylib (89.120.1) <A76EC076-A8EA-354C-B95F-7AB1EAFBCC65> /usr/lib/libpcap.A.dylib

    0x7fff6ee13000 -     0x7fff6ee2bfff  libresolv.9.dylib (67.40.1) <C57EDFEF-D36A-310B-8D14-8C68A625B1E8> /usr/lib/libresolv.9.dylib

    0x7fff6ee2d000 -     0x7fff6ee71ff7  libsandbox.1.dylib (1217.141.2) <E8BA5E84-66AF-3995-8F8E-DDC93B0A88E1> /usr/lib/libsandbox.1.dylib

    0x7fff6ee85000 -     0x7fff6ee86ff7  libspindump.dylib (281.3) <AE8C1AE9-5CBC-332F-BBE8-370A2A19FED6> /usr/lib/libspindump.dylib

    0x7fff6ee87000 -     0x7fff6f069ff7  libsqlite3.dylib (308.5) <AD4EE0C4-913A-3AA7-941D-B39DCAF29305> /usr/lib/libsqlite3.dylib

    0x7fff6f2ba000 -     0x7fff6f2bdffb  libutil.dylib (57) <F01467F6-23A7-37EE-A170-33CE1577B41D> /usr/lib/libutil.dylib

    0x7fff6f2be000 -     0x7fff6f2cbff7  libxar.1.dylib (425.2) <EE964412-9E25-30B3-BCC0-CCEFBCC8094B> /usr/lib/libxar.1.dylib

    0x7fff6f2d1000 -     0x7fff6f3b3fff  libxml2.2.dylib (33.7) <20567881-7204-3C11-9179-50FE34B3301B> /usr/lib/libxml2.2.dylib

    0x7fff6f3b7000 -     0x7fff6f3dffff  libxslt.1.dylib (16.9) <34A45627-DA5B-37D2-9609-65B425E0010A> /usr/lib/libxslt.1.dylib

    0x7fff6f3e0000 -     0x7fff6f3f2ff3  libz.1.dylib (76) <793D9643-CD83-3AAC-8B96-88D548FAB620> /usr/lib/libz.1.dylib

    0x7fff6fca1000 -     0x7fff6fca6ff3  libcache.dylib (83) <AF488D13-9E89-35E0-B078-BE37CC5B8586> /usr/lib/system/libcache.dylib

    0x7fff6fca7000 -     0x7fff6fcb2fff  libcommonCrypto.dylib (60165.120.1) <C7912BE5-993E-3581-B2A0-6AABDC8C5562> /usr/lib/system/libcommonCrypto.dylib

    0x7fff6fcb3000 -     0x7fff6fcbafff  libcompiler_rt.dylib (101.2) <49B8F644-5705-3F16-BBE0-6FFF9B17C36E> /usr/lib/system/libcompiler_rt.dylib

    0x7fff6fcbb000 -     0x7fff6fcc4ff7  libcopyfile.dylib (166.40.1) <3C481225-21E7-370A-A30E-0CCFDD64A92C> /usr/lib/system/libcopyfile.dylib

    0x7fff6fcc5000 -     0x7fff6fd57fdb  libcorecrypto.dylib (866.140.1) <60567BF8-80FA-359A-B2F3-A3BAEFB288FD> /usr/lib/system/libcorecrypto.dylib

    0x7fff6fe64000 -     0x7fff6fea4ff0  libdispatch.dylib (1173.100.2) <CD9C059C-91D9-30E8-8926-5B9CD0D5D4F5> /usr/lib/system/libdispatch.dylib

    0x7fff6fea5000 -     0x7fff6fedbfff  libdyld.dylib (750.6) <789A18C2-8AC7-3C88-813D-CD674376585D> /usr/lib/system/libdyld.dylib

    0x7fff6fedc000 -     0x7fff6fedcffb  libkeymgr.dylib (30) <DB3337BE-01CA-3425-BD0C-87774FC0CDC0> /usr/lib/system/libkeymgr.dylib

    0x7fff6fedd000 -     0x7fff6fee9ff3  libkxld.dylib (6153.141.10) <11EABEB3-CD17-3787-86BE-B8B21817E89B> /usr/lib/system/libkxld.dylib

    0x7fff6feea000 -     0x7fff6feeaff7  liblaunch.dylib (1738.140.2) <7200E214-9B4D-3B22-9844-4C7892FC890B> /usr/lib/system/liblaunch.dylib

    0x7fff6feeb000 -     0x7fff6fef0ff7  libmacho.dylib (959.0.1) <AA613A9C-961A-3B67-B696-4622FA59FC4E> /usr/lib/system/libmacho.dylib

    0x7fff6fef1000 -     0x7fff6fef3ff3  libquarantine.dylib (110.40.3) <F234E51D-FD0B-3EE4-B679-AE3EE9C536C3> /usr/lib/system/libquarantine.dylib

    0x7fff6fef4000 -     0x7fff6fef5ff7  libremovefile.dylib (48) <7C7EFC79-BD24-33EF-B073-06AED234593E> /usr/lib/system/libremovefile.dylib

    0x7fff6fef6000 -     0x7fff6ff0dff3  libsystem_asl.dylib (377.60.2) <1563EE02-0657-3B78-99BE-A947C24122EF> /usr/lib/system/libsystem_asl.dylib

    0x7fff6ff0e000 -     0x7fff6ff0eff7  libsystem_blocks.dylib (74) <0D53847E-AF5F-3ACF-B51F-A15DEA4DEC58> /usr/lib/system/libsystem_blocks.dylib

    0x7fff6ff0f000 -     0x7fff6ff96fff  libsystem_c.dylib (1353.100.2) <BBDED5E6-A646-3EED-B33A-91E4331EA063> /usr/lib/system/libsystem_c.dylib

    0x7fff6ff97000 -     0x7fff6ff9affb  libsystem_configuration.dylib (1061.141.1) <0EE84C33-64FD-372B-974A-AF7A136F2068> /usr/lib/system/libsystem_configuration.dylib

    0x7fff6ff9b000 -     0x7fff6ff9efff  libsystem_coreservices.dylib (114) <A199156E-058D-3ABB-BCE9-4B9F20DCED0F> /usr/lib/system/libsystem_coreservices.dylib

    0x7fff6ff9f000 -     0x7fff6ffa7fff  libsystem_darwin.dylib (1353.100.2) <5B12B5DB-3F30-37C1-8ECC-49A66B1F2864> /usr/lib/system/libsystem_darwin.dylib

    0x7fff6ffa8000 -     0x7fff6ffaffff  libsystem_dnssd.dylib (1096.100.3) <EBB4C2C2-E031-3094-B40A-E67BF261D295> /usr/lib/system/libsystem_dnssd.dylib

    0x7fff6ffb0000 -     0x7fff6ffb1ffb  libsystem_featureflags.dylib (17) <29FD922A-EC2C-3F25-BCCC-B58D716E60EC> /usr/lib/system/libsystem_featureflags.dylib

    0x7fff6ffb2000 -     0x7fff6ffffff7  libsystem_info.dylib (538) <8A321605-5480-330B-AF9E-64E65DE61747> /usr/lib/system/libsystem_info.dylib

    0x7fff70000000 -     0x7fff7002cff7  libsystem_kernel.dylib (6153.141.10) <FF092EE8-5BEE-3B9A-8749-F0A067115C7E> /usr/lib/system/libsystem_kernel.dylib

    0x7fff7002d000 -     0x7fff70078fef  libsystem_m.dylib (3178) <D1CF3A92-2424-3420-B375-DEED7AA68C53> /usr/lib/system/libsystem_m.dylib

    0x7fff70079000 -     0x7fff700a0fff  libsystem_malloc.dylib (283.100.6) <8549294E-4C53-36EB-99F3-584A7393D8D5> /usr/lib/system/libsystem_malloc.dylib

    0x7fff700a1000 -     0x7fff700aeffb  libsystem_networkextension.dylib (1095.140.2) <F06C65C5-2CBE-313C-96E1-A09240F9FE57> /usr/lib/system/libsystem_networkextension.dylib

    0x7fff700af000 -     0x7fff700b8ff7  libsystem_notify.dylib (241.100.2) <FA22F928-D91B-3AA5-96BB-3186AC0FB264> /usr/lib/system/libsystem_notify.dylib

    0x7fff700b9000 -     0x7fff700c1fef  libsystem_platform.dylib (220.100.1) <009A7C1F-313A-318E-B9F2-30F4C06FEA5C> /usr/lib/system/libsystem_platform.dylib

    0x7fff700c2000 -     0x7fff700ccfff  libsystem_pthread.dylib (416.100.3) <62CB1A98-0B8F-31E7-A02B-A1139927F61D> /usr/lib/system/libsystem_pthread.dylib

    0x7fff700cd000 -     0x7fff700d1ff3  libsystem_sandbox.dylib (1217.141.2) <051C4018-4345-3034-AC98-6DE42FB8273B> /usr/lib/system/libsystem_sandbox.dylib

    0x7fff700d2000 -     0x7fff700d4fff  libsystem_secinit.dylib (62.100.2) <F80872AA-E1FD-3D7E-8729-467656EC6561> /usr/lib/system/libsystem_secinit.dylib

    0x7fff700d5000 -     0x7fff700dcffb  libsystem_symptoms.dylib (1238.120.2) <702D0910-5C34-3D43-9631-8BD215DE4FE1> /usr/lib/system/libsystem_symptoms.dylib

    0x7fff700dd000 -     0x7fff700f3ff2  libsystem_trace.dylib (1147.120.1) <BC141783-66D9-3137-A783-211B38E49ADB> /usr/lib/system/libsystem_trace.dylib

    0x7fff700f5000 -     0x7fff700faff7  libunwind.dylib (35.4) <42B7B509-BAFE-365B-893A-72414C92F5BF> /usr/lib/system/libunwind.dylib

    0x7fff700fb000 -     0x7fff70130ffe  libxpc.dylib (1738.140.2) <54EEF402-42C7-3995-BADE-93C48EFC4452> /usr/lib/system/libxpc.dylib

External Modification Summary:

  Calls made by other processes targeting this process:

    task_for_pid: 12

    thread_create: 0

    thread_set_state: 0

  Calls made by this process:

    task_for_pid: 0

    thread_create: 0

    thread_set_state: 0

  Calls made by all processes on this machine:

    task_for_pid: 3585

    thread_create: 0

    thread_set_state: 0

VM Region Summary:

ReadOnly portion of Libraries: Total=600.9M resident=0K(0%) swapped_out_or_unallocated=600.9M(100%)

Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)

 

                                VIRTUAL   REGION 

REGION TYPE                        SIZE    COUNT (non-coalesced) 

===========                     =======  ======= 

Accelerate framework               256K        2 

Activity Tracing                   256K        1 

CG backing stores                  248K        2 

CG image                            52K        8 

CoreAnimation                     7008K       21 

CoreGraphics                         8K        1 

CoreImage                            8K        2 

CoreUI image data                  532K        8 

Foundation                           4K        1 

Kernel Alloc Once                    8K        1 

MALLOC                           881.8M      260 

MALLOC guard page                   32K        7 

MALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)

STACK GUARD                       56.0M        5 

Stack                             10.0M        5 

VM_ALLOCATE                        176K       15 

__DATA                            25.9M      309 

__DATA_CONST                        20K        1 

__FONT_DATA                          4K        1 

__LINKEDIT                       393.1M       26 

__OBJC_RO                         32.3M        1 

__OBJC_RW                         1908K        2 

__TEXT                           207.8M      303 

__UNICODE                          564K        1 

mapped file                       54.5M       26 

shared memory                      632K       14 

===========                     =======  ======= 

TOTAL                              1.9G     1024 

TOTAL, minus reserved VM space     1.6G     1024 

Model: MacBookAir5,2, BootROM 264.0.0.0.0, 2 processors, Dual-Core Intel Core i5, 1.8 GHz, 4 GB, SMC 2.5f9

Graphics: kHW_IntelHD4000Item, Intel HD Graphics 4000, spdisplays_builtin

Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463235363634485A2D3147364D3120

Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463235363634485A2D3147364D3120

AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9), Broadcom BCM43xx 1.0 (7.21.190.33 AirPortDriverBrcm4360-1601.1)

Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports

Network Service: Wi-Fi, AirPort, en0

Serial ATA Device: Aura Pro S MA258, 500.11 GB

USB Device: USB 3.0 Bus

USB Device: USB 2.0 Bus

USB Device: Hub

USB Device: Hub

USB Device: Internal Memory Card Reader

USB Device: Apple Internal Keyboard / Trackpad

USB Device: BRCM20702 Hub

USB Device: Bluetooth USB Host Controller

USB Device: USB 2.0 Bus

USB Device: Hub

USB Device: FaceTime HD Camera (Built-in)

Thunderbolt Bus: MacBook Air, Apple Inc., 23.4

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Your help is greatly appreciated!

Thanks, 

Lizzie

[Frank Yeh]

I am sorry for the bug in DSI Studio. Could you update DSI Studio and
see if it works?
Thanks for reporting this to me.
Frank

On Sat, Jun 19, 2021 at 3:36 PM Lizzie Hodgdon

> To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/24058b98-1932-435c-82e5-6d3682949059n%40googlegroups.com.

[Lizzie Hodgdon]

Hi Frank, 

The new version worked perfectly. Thanks so much for your help!

Lizzie

[Frank Yeh]

Any time!
Frank

On Tue, Jun 22, 2021 at 12:35 PM Lizzie Hodgdon

> To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/8fbdd1be-37d5-4eb3-8829-4d4dc2be2821n%40googlegroups.com.

[Lizzie Hodgdon]

Hi Frank, 

I'm having a different issue with my connectometry database. I was reviewing the .fib files in the db with the mask overlay and the mask does not look correct for all of my subjects. It looks like the right side of the mask did not populate correctly somewhere in the processing. I went back to the raw data and the masks I originally included for the .src file creation and those looked OK. Any ideas why the mask would look like this (see attached images) for my database?

Thanks in advance!

Lizzie

[Frank Yeh]

Hi Lizzie,

Could you send me the file to fix the bug?

Best regards,
Frank



On Thu, Jun 24, 2021 at 7:56 PM Lizzie Hodgdon

> To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/71f9eec2-ec4b-4091-8ad6-29cc6c154a9cn%40googlegroups.com.

[Lizzie Hodgdon]

Hi Frank, 

What is the best way to send the large database file?

Thank you,

Lizzie

[Frank Yeh]

You may see if this link works for you:

https://www.dropbox.com/request/W0hJkAIVC2keWAjqtqvU

Best,

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/c83ea90f-a62e-4ff3-9f09-d1bb6ce3b4c7n%40googlegroups.com.

[Lizzie Hodgdon]

I believe I was able to successfully upload the files. Please let me know if these did not go through. 

Thanks, 

Lizzie

[Frank Yeh]

I received the file and will check it out asap.

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/c2f6eb94-0727-46d1-a777-169587de3eb1n%40googlegroups.com.

[Lizzie Hodgdon]

Thank you so much, Frank. Please let me know if you need any other information to troubleshoot the issue. 

Best, 

Lizzie

[Frank Yeh]

Sorry for my late reply.

The db looks good. It is likely that the mask does a different dimension.

You may also upload the mask, and I can check what the problem is.

Best regards,

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/80a469f8-40cc-4297-9ef6-325b6ea5e4d5n%40googlegroups.com.

[Lizzie Hodgdon]

No worries! Thank you for checking the database. 

I'm a little unsure where the mask comes from for the database. I used individual masks during the .src conversion step and then kept the default template when I created the database---does the standard 1mm template = the mask for the db?

Thanks, 

Lizzie

[Frank Yeh]

The db is in the MNI space at 2mm resolution. The individual subject's mask won't work out.

You will need a mask created from HCP1065_2mm.fib.gz (included in DSI Studio package or available at brain.labsolver.org).

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/2d2e119b-73fc-4c25-8c66-c67e06ca3f3en%40googlegroups.com.

[Lizzie Hodgdon]

Hi Frank,

I tried creating a new connectometry database with the 2mm HCP 1065 template and I am still seeing the same mask abnormalities (see attached images). Do you know why this issue is persisting? I can send you the database again if that helps. 

I also have experienced DSI Studio crashing a couple times as I have worked the last couple days. Here is the crash report:

Process:               dsi_studio [25402]

Path:                  /Applications/dsi_studio.app/Contents/MacOS/dsi_studio

Identifier:            frank.dsi-studio

Version:               0

Code Type:             X86-64 (Native)

Parent Process:        ??? [1]

Responsible:           dsi_studio [25402]

User ID:               501

Date/Time:             2021-07-01 14:58:07.782 -0700

OS Version:            Mac OS X 10.15.7 (19H114)

Report Version:        12

Anonymous UUID:        FA1F4FE4-426D-BD07-A300-F829427F220A

Sleep/Wake UUID:       F5903C87-D9CF-4555-AED0-206AFBA62A18

Time Awake Since Boot: 120000 seconds

Time Since Wake:       18000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGSEGV)

Exception Codes:       KERN_INVALID_ADDRESS at 0x00007fe28600a000

Exception Note:        EXC_CORPSE_NOTIFY

Termination Signal:    Segmentation fault: 11

Termination Reason:    Namespace SIGNAL, Code 0xb

Terminating Process:   exc handler [25402]

VM Regions Near 0x7fe28600a000:

    MALLOC_LARGE           00007fe285f8a000-00007fe28600a000 [  512K] rw-/rwx SM=PRV  

--> 

    MALLOC_LARGE           00007fe286011000-00007fe286051000 [  256K] rw-/rwx SM=PRV  

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread

0   frank.dsi-studio              0x0000000102d7fa20 db_window::on_subject_list_itemSelectionChanged() + 1456

1   org.qt-project.QtCore          0x0000000103e8c14c QMetaObject::activate(QObject*, int, int, void**) + 3132

2   org.qt-project.QtWidgets      0x00000001032861ff QAbstractSlider::setValue(int) + 303

3   org.qt-project.QtWidgets      0x0000000103286bb5 QAbstractSlider::setSliderPosition(int) + 229

4   org.qt-project.QtWidgets      0x0000000103331adc QScrollBar::mouseMoveEvent(QMouseEvent*) + 796

5   org.qt-project.QtWidgets      0x00000001031d5627 QWidget::event(QEvent*) + 487

6   org.qt-project.QtWidgets      0x000000010333106c QScrollBar::event(QEvent*) + 460

7   org.qt-project.QtWidgets      0x00000001031998ed QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269

8   org.qt-project.QtWidgets      0x000000010319c748 QApplication::notify(QObject*, QEvent*) + 7336

9   org.qt-project.QtCore          0x0000000103e5aef4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212

10  org.qt-project.QtWidgets      0x000000010319a210 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool, bool) + 896

11  org.qt-project.QtWidgets      0x00000001031f4aae 0x103189000 + 441006

12  org.qt-project.QtWidgets      0x00000001031f3795 0x103189000 + 436117

13  org.qt-project.QtWidgets      0x00000001031998ed QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269

14  org.qt-project.QtWidgets      0x000000010319acf2 QApplication::notify(QObject*, QEvent*) + 594

15  org.qt-project.QtCore          0x0000000103e5aef4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212

16  org.qt-project.QtGui          0x000000010376127c QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3404

17  org.qt-project.QtGui          0x00000001037485ab QWindowSystemInterface::sendWindowSystemEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 219

18  libqcocoa.dylib                0x0000000105ebf9d0 0x105e8f000 + 199120

19  libqcocoa.dylib                0x0000000105ec0130 0x105e8f000 + 201008

20  com.apple.CoreFoundation      0x00007fff346de884 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17

21  com.apple.CoreFoundation      0x00007fff346de823 __CFRunLoopDoSource0 + 103

22  com.apple.CoreFoundation      0x00007fff346de63d __CFRunLoopDoSources0 + 209

23  com.apple.CoreFoundation      0x00007fff346dd359 __CFRunLoopRun + 937

24  com.apple.CoreFoundation      0x00007fff346dc953 CFRunLoopRunSpecific + 466

25  com.apple.HIToolbox            0x00007fff332f7abd RunCurrentEventLoopInMode + 292

26  com.apple.HIToolbox            0x00007fff332f76f4 ReceiveNextEventCommon + 359

27  com.apple.HIToolbox            0x00007fff332f7579 _BlockUntilNextEventMatchingListInModeWithFilter + 64

28  com.apple.AppKit              0x00007fff3193d039 _DPSNextEvent + 883

29  com.apple.AppKit              0x00007fff3193b880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352

30  com.apple.AppKit              0x00007fff3192d58e -[NSApplication run] + 658

31  libqcocoa.dylib                0x0000000105ebf0ab 0x105e8f000 + 196779

32  org.qt-project.QtCore          0x0000000103e5655f QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 431

33  org.qt-project.QtCore          0x0000000103e5b502 QCoreApplication::exec() + 130

34  frank.dsi-studio              0x0000000102a758af main + 1407

35  libdyld.dylib                  0x00007fff6e842cc9 start + 1

Thread 1:: com.apple.NSEventThread

0   libsystem_kernel.dylib        0x00007fff6e983dfa mach_msg_trap + 10

1   libsystem_kernel.dylib        0x00007fff6e984170 mach_msg + 60

2   com.apple.CoreFoundation      0x00007fff346dea27 __CFRunLoopServiceMachPort + 247

3   com.apple.CoreFoundation      0x00007fff346dd4e1 __CFRunLoopRun + 1329

4   com.apple.CoreFoundation      0x00007fff346dc953 CFRunLoopRunSpecific + 466

5   com.apple.AppKit              0x00007fff31ade954 _NSEventThread + 132

6   libsystem_pthread.dylib        0x00007fff6ea4b109 _pthread_start + 148

7   libsystem_pthread.dylib        0x00007fff6ea46b8b thread_start + 15

Thread 2:

0   libsystem_pthread.dylib        0x00007fff6ea46b68 start_wqthread + 0

Thread 3:

0   libsystem_pthread.dylib        0x00007fff6ea46b68 start_wqthread + 0

Thread 4:

0   libsystem_pthread.dylib        0x00007fff6ea46b68 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit):

  rax: 0x0000000000000e84  rbx: 0x0000000000001ca4  rcx: 0x00007fe37b9807e0  rdx: 0x00000000000018f8

  rdi: 0x00007fe28600917c  rsi: 0x00007fe37b97a400  rbp: 0x00007ffeed197690  rsp: 0x00007ffeed1974c0

   r8: 0x00000000000063dc   r9: 0x00007fe37b986be0  r10: 0x0000000000000400  r11: 0x00000000000001ee

  r12: 0x00007fe37459a530  r13: 0x0000000000000026  r14: 0x000000000000005e  r15: 0x0000000000000044

  rip: 0x0000000102d7fa20  rfl: 0x0000000000010206  cr2: 0x00007fe28600a000

  

Logical CPU:     1

Error Code:      0x00000004 (no mapping for user data read)

Trap Number:     14

Binary Images:

       0x102a66000 -        0x102f12fff +frank.dsi-studio (0) <A6BBC4D1-D170-3C60-9BAF-573C5E47A392> /Applications/dsi_studio.app/Contents/MacOS/dsi_studio

       0x102fb4000 -        0x102fe8ff3 +org.qt-project.QtOpenGL (5.12 - 5.12.2) <C3819F92-C025-34A9-B5BA-1CFB20C8C10B> /Applications/dsi_studio.app/Contents/Frameworks/QtOpenGL.framework/Versions/5/QtOpenGL

       0x10300a000 -        0x1030e0fff +org.qt-project.QtCharts (5.12 - 5.12.2) <B7E00D23-8529-392C-92FF-528C5CA66908> /Applications/dsi_studio.app/Contents/Frameworks/QtCharts.framework/Versions/5/QtCharts

       0x103189000 -        0x1035c7ffb +org.qt-project.QtWidgets (5.12 - 5.12.2) <75F07736-31B1-3044-B286-977143A9BEC5> /Applications/dsi_studio.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets

       0x10372d000 -        0x103b6dff3 +org.qt-project.QtGui (5.12 - 5.12.2) <014E47B2-A8A5-3AC2-A35A-DB33D4FA4FD6> /Applications/dsi_studio.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui

       0x103c72000 -        0x1041a0fff +org.qt-project.QtCore (5.12 - 5.12.2) <0A79EF75-4563-3EDD-A0CD-B75B302C6E52> /Applications/dsi_studio.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore

       0x105e8f000 -        0x105feeff7 +libqcocoa.dylib (0) <2302EF1D-93F9-3EE5-983D-EE1C3896D5EA> /Applications/dsi_studio.app/Contents/PlugIns/platforms/libqcocoa.dylib

       0x106039000 -        0x106097fff +org.qt-project.QtDBus (5.12 - 5.12.2) <A6651EE3-85E4-34E9-8305-BE684C97DDFA> /Applications/dsi_studio.app/Contents/Frameworks/QtDBus.framework/Versions/5/QtDBus

       0x1060b0000 -        0x1060d9ff7 +org.qt-project.QtPrintSupport (5.12 - 5.12.2) <89611C78-B593-37B0-A57B-3FBFFF4D7635> /Applications/dsi_studio.app/Contents/Frameworks/QtPrintSupport.framework/Versions/5/QtPrintSupport

       0x107845000 -        0x107869fff +libqmacstyle.dylib (0) <98739352-E7C4-3007-A767-C60CC1D8D20A> /Applications/dsi_studio.app/Contents/PlugIns/styles/libqmacstyle.dylib

       0x10787a000 -        0x10787fff3 +libqico.dylib (0) <0501CB3D-8253-382B-BE79-6C69B01970FA> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqico.dylib

       0x107884000 -        0x10788aff3 +libqgif.dylib (0) <B71270DB-0947-35A1-90D0-2B31C17FC1EC> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqgif.dylib

       0x10788e000 -        0x107895ffb +libqicns.dylib (0) <8924765E-CCEF-33FE-93CD-FFFF2E13CD92> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqicns.dylib

       0x10789a000 -        0x1078fdffb +libqjpeg.dylib (0) <E1F0A251-6399-320A-A74B-09FBBAF6CCBA> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqjpeg.dylib

       0x107903000 -        0x107907ff7 +libqmacheif.dylib (0) <94BB0125-4479-3D34-B813-D01921DFE855> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqmacheif.dylib

       0x10790b000 -        0x10790fff7 +libqmacjp2.dylib (0) <6D2C7CCF-43F2-35CF-BB84-F0FE7FD347C5> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqmacjp2.dylib

       0x107913000 -        0x107917fff +libqsvg.dylib (0) <2CD0EE44-8EB6-3074-95B3-CDA5A3F0CDA8> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqsvg.dylib

       0x10791c000 -        0x10794fff7 +org.qt-project.QtSvg (5.12 - 5.12.2) <9C5FA7C5-ED1A-34E4-8C33-F49EC57AE9B8> /Applications/dsi_studio.app/Contents/Frameworks/QtSvg.framework/Versions/5/QtSvg

       0x10796c000 -        0x107970ffb +libqtga.dylib (0) <22862CC6-523C-3B7F-822E-80B0B7FA2E08> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqtga.dylib

       0x107974000 -        0x1079d7ff3 +libqtiff.dylib (0) <CFDE6D59-F15D-3F9B-9DB5-794EDBC5179E> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqtiff.dylib

       0x1079df000 -        0x1079e2ff3 +libqwbmp.dylib (0) <82459E5F-9FF4-3643-81FB-6AEEC9134D59> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqwbmp.dylib

       0x1079e6000 -        0x107a7aff3 +libqwebp.dylib (0) <EA127AF0-2F8F-3E9B-AF50-D9FA9E3449CC> /Applications/dsi_studio.app/Contents/PlugIns/imageformats/libqwebp.dylib

       0x107f48000 -        0x107f4b047  libobjc-trampolines.dylib (787.1) <571C6A14-9E0E-3139-B82D-A1A3D46F2C9C> /usr/lib/libobjc-trampolines.dylib

       0x111b77000 -        0x111c08f47  dyld (750.6) <F58DDECD-315C-3B7C-8162-A5E8E1D62FE3> /usr/lib/dyld

    0x7fff276d6000 -     0x7fff27923ff8  com.apple.RawCamera.bundle (9.02.0 - 1350.29) <59F81722-039E-33F5-A20E-936E997575A3> /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera

    0x7fff2a505000 -     0x7fff2a584ff6  com.apple.driver.AppleIntelHD4000GraphicsMTLDriver (14.7.11 - 14.0.7) <9ABF5D0F-6F80-390A-B258-081D619158DC> /System/Library/Extensions/AppleIntelHD4000GraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelHD4000GraphicsMTLDriver

    0x7fff2fe7e000 -     0x7fff2fe82ffb  com.apple.agl (3.3.3 - AGL-3.3.3) <204E20A9-AEA9-3F9F-AE23-EECE3AFFFC54> /System/Library/Frameworks/AGL.framework/Versions/A/AGL

    0x7fff3026b000 -     0x7fff3026bfff  com.apple.Accelerate (1.11 - Accelerate 1.11) <C1FB2338-2D52-3884-BED3-071A82B1FD77> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate

    0x7fff3026c000 -     0x7fff30283ff7  libCGInterfaces.dylib (524.2.1) <69118118-1CEC-3019-A36E-3EC2FF1CAD8F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib

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    0x7fff59e54000 -     0x7fff59e9cfff  com.apple.Lexicon-framework (1.0 - 72) <41F208B9-8255-3EC7-9673-FE0925D071D3> /System/Library/PrivateFrameworks/Lexicon.framework/Versions/A/Lexicon

    0x7fff59ea3000 -     0x7fff59ea8ff3  com.apple.LinguisticData (1.0 - 353.18) <3B92F249-4602-325F-984B-D2DE61EEE4E1> /System/Library/PrivateFrameworks/LinguisticData.framework/Versions/A/LinguisticData

    0x7fff59f4c000 -     0x7fff59f51ff7  com.apple.LoginUICore (4.0 - 4.0) <6FE011DE-A794-3D82-9E35-7FE1D62DEE7E> /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore

    0x7fff5a741000 -     0x7fff5a744fff  com.apple.Mangrove (1.0 - 25) <482F300F-9B70-351F-A4DF-B440EEF7368D> /System/Library/PrivateFrameworks/Mangrove.framework/Versions/A/Mangrove

    0x7fff5a9ad000 -     0x7fff5aa37ff8  com.apple.MediaExperience (1.0 - 1) <0203AF27-AB5E-32FA-B529-AB7F29EEB887> /System/Library/PrivateFrameworks/MediaExperience.framework/Versions/A/MediaExperience

    0x7fff5aa38000 -     0x7fff5aa6bfff  com.apple.MediaKit (16 - 923) <09FEE738-41E4-3A9C-AF1E-1DD00C56339D> /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit

    0x7fff5b211000 -     0x7fff5b25dfff  com.apple.spotlight.metadata.utilities (1.0 - 2076.7) <0237323B-EC78-3FBF-9FC7-5A1FE2B5CE25> /System/Library/PrivateFrameworks/MetadataUtilities.framework/Versions/A/MetadataUtilities

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    0x7fff5b38d000 -     0x7fff5b3a6ff4  com.apple.MobileAssets (1.0 - 619.120.1) <07E116E6-7EBC-39F2-B5B4-31BAB6BAF852> /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset

    0x7fff5b5a7000 -     0x7fff5b5c5fff  com.apple.MobileKeyBag (2.0 - 1.0) <D5FA7041-297F-3ADC-8C7A-6EAAAB82EB68> /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag

    0x7fff5b828000 -     0x7fff5b858ff7  com.apple.MultitouchSupport.framework (3440.1 - 3440.1) <6794E1C8-9627-33DF-84F4-FDD02C97F383> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport

    0x7fff5bd58000 -     0x7fff5bd62fff  com.apple.NetAuth (6.2 - 6.2) <B0C03C41-87A3-352B-B130-96E1A6F94B47> /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth

    0x7fff5c76e000 -     0x7fff5c7b9ffb  com.apple.OTSVG (1.0 - 643.1.5.2) <AD1D4601-05DE-37A7-AD7E-FCF46BF9981D> /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG

    0x7fff5d9d6000 -     0x7fff5d9e1ff2  com.apple.PerformanceAnalysis (1.243.2 - 243.2) <B47C00E5-ECC2-313D-93D4-DBDF562C48EF> /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis

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    0x7fff6036f000 -     0x7fff603c9ff6  com.apple.ProtectedCloudStorage (1.0 - 1) <6F271388-3817-336D-9B96-08C7AAC4BA39> /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage

    0x7fff603ca000 -     0x7fff603e3ffb  com.apple.ProtocolBuffer (1 - 274.24.9.16.3) <5A020941-C43C-303E-8DE8-230FC6A84DBC> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer

    0x7fff60843000 -     0x7fff6086cff1  com.apple.RemoteViewServices (2.0 - 148) <D3AAC2BE-3423-3F18-9654-E35F1DD8DDB3> /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices

    0x7fff609d1000 -     0x7fff60a0cff0  com.apple.RunningBoardServices (1.0 - 223.140.2) <96BB04BD-D6E0-3D70-8F36-89B46DA1DA30> /System/Library/PrivateFrameworks/RunningBoardServices.framework/Versions/A/RunningBoardServices

    0x7fff622ed000 -     0x7fff622f0ff5  com.apple.SecCodeWrapper (4.0 - 448.100.6) <C4BF691D-A09E-37E8-A6CC-1145B79B8722> /System/Library/PrivateFrameworks/SecCodeWrapper.framework/Versions/A/SecCodeWrapper

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    0x7fff6399f000 -     0x7fff63c95ff7  com.apple.SkyLight (1.600.0 - 451.4) <A24929C3-95E6-35A7-9654-46FF3F4D1E80> /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight

    0x7fff644e2000 -     0x7fff644f0ffb  com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) <4D6CAC2A-151B-3BBE-BDB7-E2BE72128691> /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore

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    0x7fff64d24000 -     0x7fff64d2dff7  com.apple.SymptomDiagnosticReporter (1.0 - 1238.120.2) <C3D66901-7E31-3FDB-BD7A-441EB0520D1D> /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter

    0x7fff64d9e000 -     0x7fff64dc8ffe  com.apple.framework.SystemAdministration (1.0 - 1.0) <087553CB-5BF3-3D3D-B620-CA36AD334D92> /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration

    0x7fff64fe4000 -     0x7fff64ff4ff3  com.apple.TCC (1.0 - 1) <C9EB52E3-099B-3597-9623-067C403FA525> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC

    0x7fff65519000 -     0x7fff655dfff0  com.apple.TextureIO (3.10.9 - 3.10.9) <EEDAB753-329A-396A-8119-5BEDF7DB5A56> /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO

    0x7fff65776000 -     0x7fff65777fff  com.apple.TrustEvaluationAgent (2.0 - 33) <10E56F70-E234-31E0-9286-96D93A8ED17E> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent

    0x7fff657af000 -     0x7fff65a07ff0  com.apple.UIFoundation (1.0 - 662) <EC55B9E5-7E62-380A-9AB1-FC7BEF663653> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation

    0x7fff6667d000 -     0x7fff6669dffc  com.apple.UserManagement (1.0 - 1) <9F00880E-6EA6-3684-B208-455E14EC07C8> /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement

    0x7fff67449000 -     0x7fff67534ff2  com.apple.ViewBridge (467 - 467) <09E8FFB8-4DA1-3E80-8E19-927A2D987BF9> /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge

    0x7fff676da000 -     0x7fff676dbfff  com.apple.WatchdogClient.framework (1.0 - 67.120.2) <FFA17DA1-F6DD-34D3-A708-1F73C8BA7EA7> /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient

    0x7fff6830b000 -     0x7fff6830effa  com.apple.dt.XCTTargetBootstrap (1.0 - 16091) <D459D628-58C5-39A6-B7E8-B691CBEECEC1> /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap

    0x7fff68388000 -     0x7fff68396ff5  com.apple.audio.caulk (1.0 - 32.3) <06D695EA-E2BC-31E4-9816-9C12542BA744> /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk

    0x7fff686d8000 -     0x7fff686daff3  com.apple.loginsupport (1.0 - 1) <12F77885-27DC-3837-9CE9-A25EBA75F833> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport

    0x7fff686db000 -     0x7fff686eeffd  com.apple.login (3.0 - 3.0) <C68367BA-2225-31DD-B2D8-16AC0A44421F> /System/Library/PrivateFrameworks/login.framework/Versions/A/login

    0x7fff6b1be000 -     0x7fff6b1f1ffa  libAudioToolboxUtility.dylib (1104.95) <E534364D-5E5F-37BA-9FB6-FFFF1416820C> /usr/lib/libAudioToolboxUtility.dylib

    0x7fff6b1f8000 -     0x7fff6b22cfff  libCRFSuite.dylib (48) <5E5DE3CB-30DD-34DC-AEF8-FE8536A85E96> /usr/lib/libCRFSuite.dylib

    0x7fff6b22f000 -     0x7fff6b239fff  libChineseTokenizer.dylib (34) <7F0DA183-1796-315A-B44A-2C234C7C50BE> /usr/lib/libChineseTokenizer.dylib

    0x7fff6b23a000 -     0x7fff6b2c2fff  libCoreStorage.dylib (551) <A457B0FE-D77F-30AA-99A4-70F6A98DFE59> /usr/lib/libCoreStorage.dylib

    0x7fff6b2c5000 -     0x7fff6b2c7ff7  libDiagnosticMessagesClient.dylib (112) <C94F3B7B-1854-38EB-9778-834501C53B3F> /usr/lib/libDiagnosticMessagesClient.dylib

    0x7fff6b30d000 -     0x7fff6b4c4ffb  libFosl_dynamic.dylib (100.4) <737573B2-190A-3BA1-8220-807AD0A2CE5E> /usr/lib/libFosl_dynamic.dylib

    0x7fff6b4eb000 -     0x7fff6b4f1ff3  libIOReport.dylib (54) <75D177C4-BAD7-3285-B8E1-3019F49B3178> /usr/lib/libIOReport.dylib

    0x7fff6b5d3000 -     0x7fff6b5dafff  libMatch.1.dylib (36) <5C6F3971-9D9E-3630-BDB6-60BFC5A665E0> /usr/lib/libMatch.1.dylib

    0x7fff6b609000 -     0x7fff6b629ff7  libMobileGestalt.dylib (826.140.5) <2BE94E6A-FA61-312F-84A1-F764D71B7E39> /usr/lib/libMobileGestalt.dylib

    0x7fff6b79b000 -     0x7fff6b79cfff  libSystem.B.dylib (1281.100.1) <8E6AD412-91E7-36FC-A6FD-C13B06A4952A> /usr/lib/libSystem.B.dylib

    0x7fff6b829000 -     0x7fff6b82afff  libThaiTokenizer.dylib (3) <4F4ADE99-0D09-3223-B7C0-C407AB6DE8DC> /usr/lib/libThaiTokenizer.dylib

    0x7fff6b842000 -     0x7fff6b858fff  libapple_nghttp2.dylib (1.39.2) <07FEC48A-87CF-32A3-8194-FA70B361713A> /usr/lib/libapple_nghttp2.dylib

    0x7fff6b88d000 -     0x7fff6b8ffff7  libarchive.2.dylib (72.140.2) <F9EA2883-5D5C-3FA6-B3F8-C5031BF88ABD> /usr/lib/libarchive.2.dylib

    0x7fff6b900000 -     0x7fff6ba2ffed  libate.dylib (3.0.1) <DE609B9D-AD02-34FE-A91B-464ECDECC73A> /usr/lib/libate.dylib

    0x7fff6ba33000 -     0x7fff6ba33ff3  libauto.dylib (187) <B6124448-7690-34AE-8939-ED84AAC630CE> /usr/lib/libauto.dylib

    0x7fff6baf9000 -     0x7fff6bb09ffb  libbsm.0.dylib (60.100.1) <00BFFB9A-2FFE-3C24-896A-251BC61917FD> /usr/lib/libbsm.0.dylib

    0x7fff6bb0a000 -     0x7fff6bb16fff  libbz2.1.0.dylib (44) <14CC4988-B6D4-3879-AFC2-9A0DDC6388DE> /usr/lib/libbz2.1.0.dylib

    0x7fff6bb17000 -     0x7fff6bb69fff  libc++.1.dylib (902.1) <59A8239F-C28A-3B59-B8FA-11340DC85EDC> /usr/lib/libc++.1.dylib

    0x7fff6bb6a000 -     0x7fff6bb7fffb  libc++abi.dylib (902) <E692F14F-C65E-303B-9921-BB7E97D77855> /usr/lib/libc++abi.dylib

    0x7fff6bb80000 -     0x7fff6bb80fff  libcharset.1.dylib (59) <72447768-9244-39AB-8E79-2FA14EC0AD33> /usr/lib/libcharset.1.dylib

    0x7fff6bb81000 -     0x7fff6bb92fff  libcmph.dylib (8) <E72A20DB-2E86-378D-A237-EB9A1370F989> /usr/lib/libcmph.dylib

    0x7fff6bb93000 -     0x7fff6bbabfd7  libcompression.dylib (87) <3938CD1B-E242-3474-8A7F-9F66D316AFF3> /usr/lib/libcompression.dylib

    0x7fff6be85000 -     0x7fff6be9bff7  libcoretls.dylib (167) <770A5B96-936E-34E3-B006-B1CEC299B5A5> /usr/lib/libcoretls.dylib

    0x7fff6be9c000 -     0x7fff6be9dfff  libcoretls_cfhelpers.dylib (167) <940BF370-FD0C-30A8-AA05-FF48DA44FA4C> /usr/lib/libcoretls_cfhelpers.dylib

    0x7fff6c340000 -     0x7fff6c444fef  libcrypto.44.dylib (47.140.1) <CB6B188A-1ADC-3C5D-AFFC-2ACD86E235EE> /usr/lib/libcrypto.44.dylib

    0x7fff6c447000 -     0x7fff6c452fff  libcsfde.dylib (551) <CEE22AEF-4E77-36B1-B007-00303819965F> /usr/lib/libcsfde.dylib

    0x7fff6c45a000 -     0x7fff6c4b9ff7  libcups.2.dylib (483.7) <821ED293-B7B3-3B37-88C9-7B6CA91DA7FA> /usr/lib/libcups.2.dylib

    0x7fff6c4bb000 -     0x7fff6c520ff7  libcurl.4.dylib (118.120.2) <28809E22-6EF2-3AC7-9501-D77FB6FC5FBD> /usr/lib/libcurl.4.dylib

    0x7fff6c5c3000 -     0x7fff6c5c3fff  libenergytrace.dylib (21) <162DFCC0-8F48-3DD0-914F-FA8653E27B26> /usr/lib/libenergytrace.dylib

    0x7fff6c5c4000 -     0x7fff6c5dcfff  libexpat.1.dylib (19.60.2) <FED7C38B-92D8-342D-AED7-871B12D1F7E7> /usr/lib/libexpat.1.dylib

    0x7fff6c5ea000 -     0x7fff6c5ecfff  libfakelink.dylib (149.1) <36146CB2-E6A5-37BB-9EE8-1B4034D8F3AD> /usr/lib/libfakelink.dylib

    0x7fff6c5fb000 -     0x7fff6c600fff  libgermantok.dylib (24) <D2AE5AC0-EDCE-3216-B8C9-CF59292A545F> /usr/lib/libgermantok.dylib

    0x7fff6c601000 -     0x7fff6c60aff7  libheimdal-asn1.dylib (564.140.1) <0AC6FB62-2B0F-3E93-A931-E4DC4B1D757A> /usr/lib/libheimdal-asn1.dylib

    0x7fff6c60b000 -     0x7fff6c6fbfff  libiconv.2.dylib (59) <18311A67-E4EF-3CC7-95B3-C0EDEE3A282F> /usr/lib/libiconv.2.dylib

    0x7fff6c6fc000 -     0x7fff6c953fff  libicucore.A.dylib (64260.0.1) <8AC2CB07-E7E0-340D-A849-186FA1F27251> /usr/lib/libicucore.A.dylib

    0x7fff6c96b000 -     0x7fff6c96cfff  liblangid.dylib (133) <30CFC08C-EF36-3CF5-8AEA-C1CB070306B7> /usr/lib/liblangid.dylib

    0x7fff6c96d000 -     0x7fff6c985ff3  liblzma.5.dylib (16) <C131EF18-2CDD-3271-8A30-A8760D4FE166> /usr/lib/liblzma.5.dylib

    0x7fff6c99d000 -     0x7fff6ca44ff7  libmecab.dylib (883.11) <0D5BFD01-D4A7-3C8D-AA69-C329C1A69792> /usr/lib/libmecab.dylib

    0x7fff6ca45000 -     0x7fff6cca7ff1  libmecabra.dylib (883.11) <E31DE74D-1B88-377F-ACD3-D789D29C3AE7> /usr/lib/libmecabra.dylib

    0x7fff6d014000 -     0x7fff6d043fff  libncurses.5.4.dylib (57) <995DFEEA-40F3-377F-B73D-D02AC59D591F> /usr/lib/libncurses.5.4.dylib

    0x7fff6d173000 -     0x7fff6d5efff5  libnetwork.dylib (1880.120.4) <BA294A54-F309-398D-B308-F97032AFF555> /usr/lib/libnetwork.dylib

    0x7fff6d690000 -     0x7fff6d6c2fde  libobjc.A.dylib (787.1) <265783CE-6D74-36C9-B6D2-95D3910199EC> /usr/lib/libobjc.A.dylib

    0x7fff6d6c3000 -     0x7fff6d6c4ff7  libodfde.dylib (26) <33F49412-5106-35B8-AA60-5A497C3967E6> /usr/lib/libodfde.dylib

    0x7fff6d6d5000 -     0x7fff6d6d9fff  libpam.2.dylib (25.100.1) <0502F395-8EE6-3D2A-9239-06FD5622E19E> /usr/lib/libpam.2.dylib

    0x7fff6d6dc000 -     0x7fff6d712ff7  libpcap.A.dylib (89.120.1) <A76EC076-A8EA-354C-B95F-7AB1EAFBCC65> /usr/lib/libpcap.A.dylib

    0x7fff6d796000 -     0x7fff6d7aefff  libresolv.9.dylib (67.40.1) <C57EDFEF-D36A-310B-8D14-8C68A625B1E8> /usr/lib/libresolv.9.dylib

    0x7fff6d7b0000 -     0x7fff6d7f4ff7  libsandbox.1.dylib (1217.141.2) <E8BA5E84-66AF-3995-8F8E-DDC93B0A88E1> /usr/lib/libsandbox.1.dylib

    0x7fff6d7f5000 -     0x7fff6d807ff7  libsasl2.2.dylib (213.120.1) <E7573AC1-83FD-305A-8FB8-03145BDA286B> /usr/lib/libsasl2.2.dylib

    0x7fff6d808000 -     0x7fff6d809ff7  libspindump.dylib (281.3) <AE8C1AE9-5CBC-332F-BBE8-370A2A19FED6> /usr/lib/libspindump.dylib

    0x7fff6d80a000 -     0x7fff6d9ecff7  libsqlite3.dylib (308.5) <AD4EE0C4-913A-3AA7-941D-B39DCAF29305> /usr/lib/libsqlite3.dylib

    0x7fff6dae0000 -     0x7fff6db0dffb  libssl.46.dylib (47.140.1) <06932872-13DA-33E3-8C28-7B49FC582039> /usr/lib/libssl.46.dylib

    0x7fff6dc3d000 -     0x7fff6dc40ffb  libutil.dylib (57) <F01467F6-23A7-37EE-A170-33CE1577B41D> /usr/lib/libutil.dylib

    0x7fff6dc41000 -     0x7fff6dc4eff7  libxar.1.dylib (425.2) <EE964412-9E25-30B3-BCC0-CCEFBCC8094B> /usr/lib/libxar.1.dylib

    0x7fff6dc54000 -     0x7fff6dd36fff  libxml2.2.dylib (33.7) <20567881-7204-3C11-9179-50FE34B3301B> /usr/lib/libxml2.2.dylib

    0x7fff6dd3a000 -     0x7fff6dd62fff  libxslt.1.dylib (16.9) <34A45627-DA5B-37D2-9609-65B425E0010A> /usr/lib/libxslt.1.dylib

    0x7fff6dd63000 -     0x7fff6dd75ff3  libz.1.dylib (76) <793D9643-CD83-3AAC-8B96-88D548FAB620> /usr/lib/libz.1.dylib

    0x7fff6e624000 -     0x7fff6e629ff3  libcache.dylib (83) <AF488D13-9E89-35E0-B078-BE37CC5B8586> /usr/lib/system/libcache.dylib

    0x7fff6e62a000 -     0x7fff6e635fff  libcommonCrypto.dylib (60165.120.1) <C7912BE5-993E-3581-B2A0-6AABDC8C5562> /usr/lib/system/libcommonCrypto.dylib

    0x7fff6e636000 -     0x7fff6e63dfff  libcompiler_rt.dylib (101.2) <49B8F644-5705-3F16-BBE0-6FFF9B17C36E> /usr/lib/system/libcompiler_rt.dylib

    0x7fff6e63e000 -     0x7fff6e647ff7  libcopyfile.dylib (166.40.1) <3C481225-21E7-370A-A30E-0CCFDD64A92C> /usr/lib/system/libcopyfile.dylib

    0x7fff6e648000 -     0x7fff6e6dafdb  libcorecrypto.dylib (866.140.1) <60567BF8-80FA-359A-B2F3-A3BAEFB288FD> /usr/lib/system/libcorecrypto.dylib

    0x7fff6e7e7000 -     0x7fff6e827ff0  libdispatch.dylib (1173.100.2) <CD9C059C-91D9-30E8-8926-5B9CD0D5D4F5> /usr/lib/system/libdispatch.dylib

    0x7fff6e828000 -     0x7fff6e85efff  libdyld.dylib (750.6) <789A18C2-8AC7-3C88-813D-CD674376585D> /usr/lib/system/libdyld.dylib

    0x7fff6e85f000 -     0x7fff6e85fffb  libkeymgr.dylib (30) <DB3337BE-01CA-3425-BD0C-87774FC0CDC0> /usr/lib/system/libkeymgr.dylib

    0x7fff6e860000 -     0x7fff6e86cff3  libkxld.dylib (6153.141.10) <11EABEB3-CD17-3787-86BE-B8B21817E89B> /usr/lib/system/libkxld.dylib

    0x7fff6e86d000 -     0x7fff6e86dff7  liblaunch.dylib (1738.140.2) <7200E214-9B4D-3B22-9844-4C7892FC890B> /usr/lib/system/liblaunch.dylib

    0x7fff6e86e000 -     0x7fff6e873ff7  libmacho.dylib (959.0.1) <AA613A9C-961A-3B67-B696-4622FA59FC4E> /usr/lib/system/libmacho.dylib

    0x7fff6e874000 -     0x7fff6e876ff3  libquarantine.dylib (110.40.3) <F234E51D-FD0B-3EE4-B679-AE3EE9C536C3> /usr/lib/system/libquarantine.dylib

    0x7fff6e877000 -     0x7fff6e878ff7  libremovefile.dylib (48) <7C7EFC79-BD24-33EF-B073-06AED234593E> /usr/lib/system/libremovefile.dylib

    0x7fff6e879000 -     0x7fff6e890ff3  libsystem_asl.dylib (377.60.2) <1563EE02-0657-3B78-99BE-A947C24122EF> /usr/lib/system/libsystem_asl.dylib

    0x7fff6e891000 -     0x7fff6e891ff7  libsystem_blocks.dylib (74) <0D53847E-AF5F-3ACF-B51F-A15DEA4DEC58> /usr/lib/system/libsystem_blocks.dylib

    0x7fff6e892000 -     0x7fff6e919fff  libsystem_c.dylib (1353.100.2) <BBDED5E6-A646-3EED-B33A-91E4331EA063> /usr/lib/system/libsystem_c.dylib

    0x7fff6e91a000 -     0x7fff6e91dffb  libsystem_configuration.dylib (1061.141.1) <0EE84C33-64FD-372B-974A-AF7A136F2068> /usr/lib/system/libsystem_configuration.dylib

    0x7fff6e91e000 -     0x7fff6e921fff  libsystem_coreservices.dylib (114) <A199156E-058D-3ABB-BCE9-4B9F20DCED0F> /usr/lib/system/libsystem_coreservices.dylib

    0x7fff6e922000 -     0x7fff6e92afff  libsystem_darwin.dylib (1353.100.2) <5B12B5DB-3F30-37C1-8ECC-49A66B1F2864> /usr/lib/system/libsystem_darwin.dylib

    0x7fff6e92b000 -     0x7fff6e932fff  libsystem_dnssd.dylib (1096.100.3) <EBB4C2C2-E031-3094-B40A-E67BF261D295> /usr/lib/system/libsystem_dnssd.dylib

    0x7fff6e933000 -     0x7fff6e934ffb  libsystem_featureflags.dylib (17) <29FD922A-EC2C-3F25-BCCC-B58D716E60EC> /usr/lib/system/libsystem_featureflags.dylib

    0x7fff6e935000 -     0x7fff6e982ff7  libsystem_info.dylib (538) <8A321605-5480-330B-AF9E-64E65DE61747> /usr/lib/system/libsystem_info.dylib

    0x7fff6e983000 -     0x7fff6e9afff7  libsystem_kernel.dylib (6153.141.10) <FF092EE8-5BEE-3B9A-8749-F0A067115C7E> /usr/lib/system/libsystem_kernel.dylib

    0x7fff6e9b0000 -     0x7fff6e9fbfef  libsystem_m.dylib (3178) <D1CF3A92-2424-3420-B375-DEED7AA68C53> /usr/lib/system/libsystem_m.dylib

    0x7fff6e9fc000 -     0x7fff6ea23fff  libsystem_malloc.dylib (283.100.6) <8549294E-4C53-36EB-99F3-584A7393D8D5> /usr/lib/system/libsystem_malloc.dylib

    0x7fff6ea24000 -     0x7fff6ea31ffb  libsystem_networkextension.dylib (1095.140.2) <F06C65C5-2CBE-313C-96E1-A09240F9FE57> /usr/lib/system/libsystem_networkextension.dylib

    0x7fff6ea32000 -     0x7fff6ea3bff7  libsystem_notify.dylib (241.100.2) <FA22F928-D91B-3AA5-96BB-3186AC0FB264> /usr/lib/system/libsystem_notify.dylib

    0x7fff6ea3c000 -     0x7fff6ea44fef  libsystem_platform.dylib (220.100.1) <009A7C1F-313A-318E-B9F2-30F4C06FEA5C> /usr/lib/system/libsystem_platform.dylib

    0x7fff6ea45000 -     0x7fff6ea4ffff  libsystem_pthread.dylib (416.100.3) <62CB1A98-0B8F-31E7-A02B-A1139927F61D> /usr/lib/system/libsystem_pthread.dylib

    0x7fff6ea50000 -     0x7fff6ea54ff3  libsystem_sandbox.dylib (1217.141.2) <051C4018-4345-3034-AC98-6DE42FB8273B> /usr/lib/system/libsystem_sandbox.dylib

    0x7fff6ea55000 -     0x7fff6ea57fff  libsystem_secinit.dylib (62.100.2) <F80872AA-E1FD-3D7E-8729-467656EC6561> /usr/lib/system/libsystem_secinit.dylib

    0x7fff6ea58000 -     0x7fff6ea5fffb  libsystem_symptoms.dylib (1238.120.2) <702D0910-5C34-3D43-9631-8BD215DE4FE1> /usr/lib/system/libsystem_symptoms.dylib

    0x7fff6ea60000 -     0x7fff6ea76ff2  libsystem_trace.dylib (1147.120.1) <BC141783-66D9-3137-A783-211B38E49ADB> /usr/lib/system/libsystem_trace.dylib

    0x7fff6ea78000 -     0x7fff6ea7dff7  libunwind.dylib (35.4) <42B7B509-BAFE-365B-893A-72414C92F5BF> /usr/lib/system/libunwind.dylib

    0x7fff6ea7e000 -     0x7fff6eab3ffe  libxpc.dylib (1738.140.2) <54EEF402-42C7-3995-BADE-93C48EFC4452> /usr/lib/system/libxpc.dylib

External Modification Summary:

  Calls made by other processes targeting this process:

    task_for_pid: 13

    thread_create: 0

    thread_set_state: 0

  Calls made by this process:

    task_for_pid: 0

    thread_create: 0

    thread_set_state: 0

  Calls made by all processes on this machine:

    task_for_pid: 69425

    thread_create: 0

    thread_set_state: 0

VM Region Summary:

ReadOnly portion of Libraries: Total=606.6M resident=0K(0%) swapped_out_or_unallocated=606.6M(100%)

Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)

 

                                VIRTUAL   REGION 

REGION TYPE                        SIZE    COUNT (non-coalesced) 

===========                     =======  ======= 

Accelerate framework               128K        1 

Activity Tracing                   256K        1 

CG backing stores                  248K        2 

CG image                            96K       15 

CoreAnimation                     4604K       23 

CoreGraphics                         8K        1 

CoreImage                            8K        2 

CoreUI image data                  632K        9 

Foundation                           4K        1 

Kernel Alloc Once                    8K        1 

MALLOC                           734.6M      179 

MALLOC guard page                   32K        6 

MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)

STACK GUARD                       56.0M        5 

Stack                             10.0M        5 

VM_ALLOCATE                        176K       15 

__DATA                            26.6M      329 

__DATA_CONST                        20K        1 

__FONT_DATA                          4K        1 

__LINKEDIT                       393.1M       26 

__OBJC_RO                         32.3M        1 

__OBJC_RW                         1904K        1 

__TEXT                           213.5M      323 

__UNICODE                          564K        1 

mapped file                       59.1M       29 

shared memory                      636K       15 

===========                     =======  ======= 

TOTAL                              1.9G      994 

TOTAL, minus reserved VM space     1.5G      994 

Model: MacBookAir5,2, BootROM 264.0.0.0.0, 2 processors, Dual-Core Intel Core i5, 1.8 GHz, 4 GB, SMC 2.5f9

Graphics: kHW_IntelHD4000Item, Intel HD Graphics 4000, spdisplays_builtin

Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463235363634485A2D3147364D3120

Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463235363634485A2D3147364D3120

AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9), Broadcom BCM43xx 1.0 (7.21.190.33 AirPortDriverBrcm4360-1601.1)

Bluetooth: Version 7.0.6f8, 3 services, 27 devices, 1 incoming serial ports

Network Service: Wi-Fi, AirPort, en0

Serial ATA Device: Aura Pro S MA258, 500.11 GB

USB Device: USB 2.0 Bus

USB Device: Hub

USB Device: Hub

USB Device: Internal Memory Card Reader

USB Device: Apple Internal Keyboard / Trackpad

USB Device: BRCM20702 Hub

USB Device: Bluetooth USB Host Controller

USB Device: USB 2.0 Bus

USB Device: Hub

USB Device: FaceTime HD Camera (Built-in)

USB Device: USB 3.0 Bus

Thunderbolt Bus: MacBook Air, Apple Inc., 23.4

[Frank Yeh]

Sorry about the crash. I will see if I can fix it.

Did you create the mask from HCP1065.fib.gz? If yes, could you send the mask and the db file to me?

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/36642096-5250-4604-84f4-3fdde19dfff1n%40googlegroups.com.

[Lizzie Hodgdon]

Hi Frank, 

Thank you for looking into the crash. 

I believe I did create the mask from HCP1065.fib.gz when I reconstructed the .src to .fib files. I'm not sure how to extract that mask to send it--if you could provide some instructions on how to send the mask file, that would be greatly appreciated. 

Thanks so much for all your help, 

Lizzie

[Frank Yeh]

The mask in [Step T2 Reconstruction] is not used if the QSDR was used.

Perhaps I may ask your purpose of using the mask?

Did you want to exclude a region?

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/1a3d4209-acb7-461f-aa63-86badf084558n%40googlegroups.com.

[Lizzie Hodgdon]

I see--I didn't realize the mask is not used for QSDR. The purpose of the mask is just to make sure that anything outside the brain is not included and that the whole brain is covered for all participants in the db. I'm just wondering it I should be concerned about the strange checkered-looking holes in the database mask on the far right side of the brain are not going to affect those areas (i.e., leave out the voxels not covered by the db mask). 

I hope that helps make sense of my concerns about the mask.

Best,

Lizzie

[Frank Yeh]

On Fri, Jul 2, 2021 at 4:06 PM Lizzie Hodgdon <elizabet...@gmail.com> wrote:

I see--I didn't realize the mask is not used for QSDR. The purpose of the mask is just to make sure that anything outside the brain is not included and that the whole brain is covered for all participants in the db.

Make sense. QSDR has a built-in mask from the MNI template, and the concern should be addressed (or DSI Studio would need to be fixed to address it).

 

I'm just wondering it I should be concerned about the strange checkered-looking holes in the database mask on the far right side of the brain are not going to affect those areas (i.e., leave out the voxels not covered by the db mask). 

Do you have a screenshot of it? I can help to double-check to make sure it is okay.

 

I hope that helps make sense of my concerns about the mask.

For most analyses in connectome DB, the results should be mask-insensitive. 

The only thing that directly depends on the mask is extracting the fingerprinting vector from the mask.  

 

Best,

Lizzie

[Lizzie Hodgdon]

Yes, I can provide pictures. This is what the mask looks like in my database. It looks OK until sagittal slice 68. This mask anomaly appears on every subject in the db. It just looks strange so I want to be sure it's not wrong before run the connectometry analysis. Here are some screenshots:

 

[Frank Yeh]

This is very helpful.

I just realized you checked the "mask" check box on the right lower corner, and it is obviously not functioning correctly (I haven't clicked on that box for many years...)

I am going to fix it.

But rest assured that this won't affect the analysis and thanks for reporting it (also sorry for the hassle and confusion).

Best regards,

Frank

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[Lizzie Hodgdon]

That’s great to know! Thanks for all your help. I know my study’s DTI data are a little lower quality (from acquisition) so I’m just trying to be diligent about quality control whenever I see the option. I have done the other quality control checks you provided in DSI Studio so I feel more confident now that my analyses will run smoothly.

Thanks again!

Lizzie

On Jul 2, 2021, at 1:32 PM, Frank Yeh <fran...@gmail.com> wrote:

This is very helpful.

I just realized you checked the "mask" check box on the right lower corner, and it is obviously not functioning correctly (I haven't clicked on that box for many years...)

I am going to fix it.

But rest assured that this won't affect the analysis and thanks for reporting it (also sorry for the hassle and confusion).

Best regards,

Frank

On Fri, Jul 2, 2021 at 4:25 PM Lizzie Hodgdon <elizabet...@gmail.com> wrote:

Yes, I can provide pictures. This is what the mask looks like in my database. It looks OK until sagittal slice 68. This mask anomaly appears on every subject in the db. It just looks strange so I want to be sure it's not wrong before run the connectometry analysis. Here are some screenshots:

<Screen Shot 2021-07-01 at 3.02.23 PM.png><Screen Shot 2021-07-01 at 3.02.46 PM.png><Screen Shot 2021-07-01 at 3.03.09 PM.png> 

On Friday, July 2, 2021 at 1:15:00 PM UTC-7 Frank Yeh wrote:

On Fri, Jul 2, 2021 at 4:06 PM Lizzie Hodgdon <elizabet...@gmail.com> wrote:

I see--I didn't realize the mask is not used for QSDR. The purpose of the mask is just to make sure that anything outside the brain is not included and that the whole brain is covered for all participants in the db. 

Make sense. QSDR has a built-in mask from the MNI template, and the concern should be addressed (or DSI Studio would need to be fixed to address it).

 

I'm just wondering it I should be concerned about the strange checkered-looking holes in the database mask on the far right side of the brain are not going to affect those areas (i.e., leave out the voxels not covered by the db mask). 

Do you have a screenshot of it? I can help to double-check to make sure it is okay.

 

I hope that helps make sense of my concerns about the mask.

For most analyses in connectome DB, the results should be mask-insensitive. 

The only thing that directly depends on the mask is extracting the fingerprinting vector from the mask.  

 

Best,

Lizzie

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[Frank Yeh]

Wish the best results.

If there is anything not working correctly, please let me know.

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/901A1EFA-84C3-40EC-96C0-EF7A65D18CF8%40gmail.com.

[Lizzie Hodgdon]

Hi Frank,

I wanted to reach out again with another question. 

I want to make sure my QA values are normalized for my connectometry analyses because there are a few cases with different b-values. I believe I saw a "Normalize QA" option for C3: Group Connectomtry Analysis in a previous version of DSI Studio but I'm having trouble finding it now. Under Advanced Options, this is all I see: 

Thanks for your help!

Lizzie

[Frank Yeh]

The connectometry database you created uses gfa value, not qa value. Thus there is no "normalize qa" checkbox.

Best regards,

Frank

To view this discussion on the web visit https://groups.google.com/d/msgid/dsi-studio/3dc864d0-5cc7-4b91-b4b4-45483da6d588n%40googlegroups.com.

[Lizzie Hodgdon]

Ah, of course! Thank you, Frank!