dear Frank
I am using the command line
--action=ana --source="$f" --tract="${f}".trk.gz --template=5 --connectivity=WHS_SD_rat --connectivity_value=count,qa --connectivity_type=pass --connectivity_threshold=0.00 --output="$f".mat > "${f}.Connectivity.log.txt"
the tractography has been done in native space but it seems that dsi thinks I am using mouse brain and it gives the error:
ERROR: WHS_SD_rat is not one of the following built-in atlases:ABA,DSURQE,DukeRCCF
how can i correct this error? is it correct if I coppy pase the atlas of rat brain in folder of mouse in dsi studio?