About the Automatic fiber tracking in batch processing

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Jason Yang

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May 13, 2022, 8:23:29 AMMay 13
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Dear Pro.Yeh,
How to report the "Methods" section of fiber bundle tracking using "Automatic fiber tracking in batch processing", I used the following parameters for fiber tracking (Fig.1), some of which are absent compared to other literature (Fig.2).
Best,
Jason Yang
Fig.1
微信图片_20220513202122.png
Fig.2
微信图片_20220513202130.png

Frank Yeh

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May 16, 2022, 9:38:34 PMMay 16
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Those parameters will use the default setting.
If you would like to change them, the current solution is to use the command line with --action=trk.
Best regards,
Frank

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Jason Yang

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May 17, 2022, 12:22:10 AMMay 17
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Are default parameters are presented in 'https://dsi-studio.labsolver.org/doc/gui_t3_whole_brain.html'
Best,
Jason Yang

Frank Yeh <fran...@gmail.com> 于2022年5月17日周二 09:38写道:
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Frank Yeh

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May 19, 2022, 9:42:25 AMMay 19
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Mostly. To check in detail, when you run the analysis, the setting
will be recorded in the Method report.
Frank

On Tue, May 17, 2022 at 12:22 AM Jason Yang <joech...@gmail.com> wrote:
>
> Are default parameters are presented in 'https://dsi-studio.labsolver.org/doc/gui_t3_whole_brain.html'
> Best,
> Jason Yang
>
> Frank Yeh <fran...@gmail.com> 于2022年5月17日周二 09:38写道:
>>
>> Those parameters will use the default setting.
>> If you would like to change them, the current solution is to use the command line with --action=trk.
>> Best regards,
>> Frank
>>
>> On Fri, May 13, 2022 at 8:23 AM Jason Yang <joech...@gmail.com> wrote:
>>>
>>> Dear Pro.Yeh,
>>> How to report the "Methods" section of fiber bundle tracking using "Automatic fiber tracking in batch processing", I used the following parameters for fiber tracking (Fig.1), some of which are absent compared to other literature (Fig.2).
>>> Best,
>>> Jason Yang
>>> Fig.1
>>>
>>> Fig.2
>>>
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>>
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>
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Jason Yang

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May 19, 2022, 9:58:45 AMMay 19
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Sorry,   Sorry, I was careless about it.
Best regards,
Jason Yang

Frank Yeh <fran...@gmail.com> 于2022年5月19日周四 21:42写道:

Jason Yang

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May 20, 2022, 5:10:58 PMMay 20
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Dear Pro.Yeh
Is there a way to visualize the segments of the fibrous tracts involved in the tumor? Or is it just manual segmentation?
Best,
Jason Yang

Frank Yeh

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May 20, 2022, 5:36:04 PMMay 20
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You can set the tumor region to seed. Then make a copy of the tumor
region, negate it using [Region Misc][Modify][Negate] and set it as
terminative.
Lower the minimum track length. This will only tract pathways within the tumor.
Frank
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Jason Yang

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May 21, 2022, 11:46:35 AMMay 21
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厉害!
Best,
Jason Yang

Frank Yeh <fran...@gmail.com> 于2022年5月21日周六 05:36写道:
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