Certainly! Here are the steps I've been following to pinpoint the issue with the coordinates:
I start by loading the tracts in the template space and saving them as .mat files to capture their coordinates.
Next, I open the .mat files in Matlab to examine the coordinates of the tracts. For instance, I select a bundle of tracts that intersects the point with coordinates (66,77,57).
Following this, I load the AAL626 atlas in Matlab to identify which Region of Interest (ROI) corresponds to these coordinates, finding that ROI should be numbered 85.
Finally, I switch back to DSI Studio, load a template brain .src file, and navigate through Regions > Open region > Load AAL626, and specifically select AAL_626_85. The atlas and the template brain aligns well.
Despite these steps, I find that the tracts and the ROI do not align as they theoretically should.