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Jaiprakash Gurav
,
Frank Yeh
2
1:37 PM
Question Regarding TOPUP/EDDY Correction in DSI Studio
Dear Jaiprakash, Are you using the Windows or Mac version of DSI Studio? If you are using Windows,
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Question Regarding TOPUP/EDDY Correction in DSI Studio
Dear Jaiprakash, Are you using the Windows or Mac version of DSI Studio? If you are using Windows,
1:37 PM
shashank bansal
,
Frank Yeh
2
11:54 AM
CLI equivalent of "No" on the auto-isotropic resample popup
I did a code review, and you are right. The current CLI setting doesn't allow turning this off. I
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CLI equivalent of "No" on the auto-isotropic resample popup
I did a code review, and you are right. The current CLI setting doesn't allow turning this off. I
11:54 AM
Alexa Mousley
,
Frank Yeh
2
Jun 12
Tract visualization issue
Sorry about the bug. Do you have the exact steps to reproduce the error? (eg using .fz file at Fiber
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Tract visualization issue
Sorry about the bug. Do you have the exact steps to reproduce the error? (eg using .fz file at Fiber
Jun 12
Maryam Shapourjani
Jun 11
Tractography, Tolerance and number of tracts
Hello Dear Frank, I hope you are doing well. My work focuses on dMRI association pathways in term-
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Tractography, Tolerance and number of tracts
Hello Dear Frank, I hope you are doing well. My work focuses on dMRI association pathways in term-
Jun 11
Allison Yan
,
Frank Yeh
5
Jun 10
Connectivity Matrix Resutls versus Filter Tracts by ROI Results
Hi Frank, Got it! Thank you again for all the explanations. Best, Allison Frank Yeh <frank.yeh@
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Connectivity Matrix Resutls versus Filter Tracts by ROI Results
Hi Frank, Got it! Thank you again for all the explanations. Best, Allison Frank Yeh <frank.yeh@
Jun 10
Derrick Derrick
Jun 8
Issue: "cannot find template data" error
Dear Dr. Yeh, I downloaded the version from the link below: https://github.com/frankyeh/DSI-Studio/
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Issue: "cannot find template data" error
Dear Dr. Yeh, I downloaded the version from the link below: https://github.com/frankyeh/DSI-Studio/
Jun 8
Alberto Benelli
,
Frank Yeh
2
Jun 8
WM lesion overlapping fibers
There are two related ways to do this. First, if you only want to identify fibers that pass through
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WM lesion overlapping fibers
There are two related ways to do this. First, if you only want to identify fibers that pass through
Jun 8
Josh Neudorf
,
Frank Yeh
5
Jun 4
Subject Space ROI Not Working
Thanks Frank. I used the brain.mgz from freesurfer (converted to .nii) and this worked. Best, Josh On
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Subject Space ROI Not Working
Thanks Frank. I used the brain.mgz from freesurfer (converted to .nii) and this worked. Best, Josh On
Jun 4
Divya
,
Frank Yeh
6
May 29
Database Creation Issue for Correlational Tractography
Hi Divya, I committed a fix and updated DSI Studio. Could you download the most recent version (dated
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Database Creation Issue for Correlational Tractography
Hi Divya, I committed a fix and updated DSI Studio. Could you download the most recent version (dated
May 29
Josh Neudorf
,
Frank Yeh
3
May 27
Custom Template for QSDR
Hi Frank, Thank you for explaining this. We will try the analysis on the neonate template. Best, Josh
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Custom Template for QSDR
Hi Frank, Thank you for explaining this. We will try the analysis on the neonate template. Best, Josh
May 27
Hamsi Radhakrishnan
, …
Frank Yeh
10
May 25
dsistudio autotrack not saving out all bundles
Hi Steven, The current tractography atlas uses a different tract hierarchy from the older atlas.
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dsistudio autotrack not saving out all bundles
Hi Steven, The current tractography atlas uses a different tract hierarchy from the older atlas.
May 25
taravat rasooli
,
Frank Yeh
2
May 25
Reference for ROI-Constrained Correlational Tractography in DSI Studio
Dear Taravat, There is no separate peer-reviewed paper specifically for ROI-constrained correlational
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Reference for ROI-Constrained Correlational Tractography in DSI Studio
Dear Taravat, There is no separate peer-reviewed paper specifically for ROI-constrained correlational
May 25
Tipakorn Tumnark
, …
tipakorn tumnark
3
May 20
Fiber Data hub and MD value
Dear Professor, Thank you for the clear explanation. I appreciate your help and support I'll
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Fiber Data hub and MD value
Dear Professor, Thank you for the clear explanation. I appreciate your help and support I'll
May 20
Karen Aguilar Mateu
,
Frank Yeh
2
May 18
GUI AutoTrack versus CLI AutoTrack
Hello Karen, The GUI AutoTrack and CLI --action=atk are not always directly comparable. In the GUI,
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GUI AutoTrack versus CLI AutoTrack
Hello Karen, The GUI AutoTrack and CLI --action=atk are not always directly comparable. In the GUI,
May 18
Michael-John Beltejar
,
Frank Yeh
2
May 15
GPU acceleration
DSI Studio only uses the GPU for image registration, normalization, and segmentation. On Fri, May 15,
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GPU acceleration
DSI Studio only uses the GPU for image registration, normalization, and segmentation. On Fri, May 15,
May 15
Mark Pinsk
, …
Frank Yeh
8
May 14
CLI correlational tractography aborts at "create tract figures" — QWidget without QApplication (May 12 2026 build)
Yes, I would do that using command history. On Thu, May 14, 2026 at 12:03 PM 'Mark Pinsk' via
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CLI correlational tractography aborts at "create tract figures" — QWidget without QApplication (May 12 2026 build)
Yes, I would do that using command history. On Thu, May 14, 2026 at 12:03 PM 'Mark Pinsk' via
May 14
Zubina Zafar
,
Frank Yeh
2
May 14
Inquiry about Automating volume extraction across a large set of T1-Weighted MRI scans
The GUI also support batch processing using command history: eg wk1 videos at practicum.labsolver.org
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Inquiry about Automating volume extraction across a large set of T1-Weighted MRI scans
The GUI also support batch processing using command history: eg wk1 videos at practicum.labsolver.org
May 14
yy z
, …
Frank Yeh
6
May 14
Connectivity Matrix Export
On Thu, May 14, 2026 at 12:02 PM 柯酥卤 <kesul...@gmail.com> wrote: 我所有操作都和提问者一致的话应该采用什么指令能够生成这个
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Connectivity Matrix Export
On Thu, May 14, 2026 at 12:02 PM 柯酥卤 <kesul...@gmail.com> wrote: 我所有操作都和提问者一致的话应该采用什么指令能够生成这个
May 14
Juliana Hougland
,
Frank Yeh
4
May 12
Brainnetome Atlas Naming
The atlas will be updated in the next coming release (in few days). At the time being, you may
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Brainnetome Atlas Naming
The atlas will be updated in the next coming release (in few days). At the time being, you may
May 12
Patrick Sadil
,
Frank Yeh
2
May 6
Thresholds for New "Bad Slices" Metric
I would recommend using Neighboring DWI Correlations (NDC) to identify potential outliers.
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Thresholds for New "Bad Slices" Metric
I would recommend using Neighboring DWI Correlations (NDC) to identify potential outliers.
May 6
Caesar
,
Frank Yeh
8
May 5
Issue compiling latest DSI Studio (with TumorSynth plugin) on macOS
Glad to know that it works on your side. If you have any suggestions, please feel free to let me know
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Issue compiling latest DSI Studio (with TumorSynth plugin) on macOS
Glad to know that it works on your side. If you have any suggestions, please feel free to let me know
May 5
Finian Keleher
,
Frank Yeh
4
May 4
Controlling for site / lesions in TBI studies
For the patients with lesions, do you think leaving lesions unmasked could introduce issues at later
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Controlling for site / lesions in TBI studies
For the patients with lesions, do you think leaving lesions unmasked could introduce issues at later
May 4
이익성
,
Frank Yeh
2
May 1
Inquiry regarding setting longitudinal variables in Correlational Tractography (Version: Apr 18 2026)
Sorry for the delayed reply. > In the "Study Variables" section, I cannot find an option
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Inquiry regarding setting longitudinal variables in Correlational Tractography (Version: Apr 18 2026)
Sorry for the delayed reply. > In the "Study Variables" section, I cannot find an option
May 1
Anna Kannonier
,
Frank Yeh
4
Apr 22
Three groups setup
I computed the difference maps I assume you get a new database storing the longitudinal changes here.
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Three groups setup
I computed the difference maps I assume you get a new database storing the longitudinal changes here.
Apr 22
Edoardo Vattimo
,
Frank Yeh
4
Apr 19
DSI Studio Built-in Atlases - MNI Space
Perfec. Thank you so much, Frank! On Mon, Mar 23, 2026 at 4:20 PM Frank Yeh <fran...@gmail.com
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DSI Studio Built-in Atlases - MNI Space
Perfec. Thank you so much, Frank! On Mon, Mar 23, 2026 at 4:20 PM Frank Yeh <fran...@gmail.com
Apr 19
taravat rasooli
Apr 14
Clarification on the Statistical Interpretation of Bundle-Specific FDR in Connectometry Output
Dear Dr. Yeh, Thank you very much for developing DSI Studio and making it such a useful tool. It has
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Clarification on the Statistical Interpretation of Bundle-Specific FDR in Connectometry Output
Dear Dr. Yeh, Thank you very much for developing DSI Studio and making it such a useful tool. It has
Apr 14
Frank Yeh
,
Braeden Rodriguez
5
Apr 13
Re: [dsi-studio] Adding new atlases to DSI studio
There are many tools available, such FSL, SPM, ANT...etc. On Mon, Apr 13, 2026 at 12:04 PM Braeden
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Re: [dsi-studio] Adding new atlases to DSI studio
There are many tools available, such FSL, SPM, ANT...etc. On Mon, Apr 13, 2026 at 12:04 PM Braeden
Apr 13
Takahiro Yokoyama
,
Frank Yeh
2
Apr 8
Questions regarding 2D mosaic export and "Recognize and Cluster" for rat brain data
To display and export your results as a 2D mosaic, please navigate to the "Step T3c" tab.
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Questions regarding 2D mosaic export and "Recognize and Cluster" for rat brain data
To display and export your results as a 2D mosaic, please navigate to the "Step T3c" tab.
Apr 8
Steven J Granger
,
Frank Yeh
10
Apr 2
Data Quality Question
yes On Thu, Apr 2, 2026 at 11:48 AM Steven J Granger <gran...@uci.edu> wrote: > > Hi
unread,
Data Quality Question
yes On Thu, Apr 2, 2026 at 11:48 AM Steven J Granger <gran...@uci.edu> wrote: > > Hi
Apr 2
Drew Parker
,
Frank Yeh
2
Mar 30
Apptainer Qt library problems
Hi Drew, The libQt6Core.so.6 error you are seeing is a common issue when running newer Qt6-based
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Apptainer Qt library problems
Hi Drew, The libQt6Core.so.6 error you are seeing is a common issue when running newer Qt6-based
Mar 30