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Hamsi Radhakrishnan
, …
Frank Yeh
10
May 25
dsistudio autotrack not saving out all bundles
Hi Steven, The current tractography atlas uses a different tract hierarchy from the older atlas.
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dsistudio autotrack not saving out all bundles
Hi Steven, The current tractography atlas uses a different tract hierarchy from the older atlas.
May 25
Josh Neudorf
,
Frank Yeh
2
May 25
Custom Template for QSDR
Hi Josh, Adding a new template for QSDR is much more challenging than simply copying a NIfTI template
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Custom Template for QSDR
Hi Josh, Adding a new template for QSDR is much more challenging than simply copying a NIfTI template
May 25
taravat rasooli
,
Frank Yeh
2
May 25
Reference for ROI-Constrained Correlational Tractography in DSI Studio
Dear Taravat, There is no separate peer-reviewed paper specifically for ROI-constrained correlational
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Reference for ROI-Constrained Correlational Tractography in DSI Studio
Dear Taravat, There is no separate peer-reviewed paper specifically for ROI-constrained correlational
May 25
Divya
,
Frank Yeh
2
May 22
Database Creation Issue for Correlational Tractography
Could you update DSI Studio to the most recent version and see if it works? Frank On Fri, May 22,
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Database Creation Issue for Correlational Tractography
Could you update DSI Studio to the most recent version and see if it works? Frank On Fri, May 22,
May 22
Tipakorn Tumnark
, …
tipakorn tumnark
3
May 20
Fiber Data hub and MD value
Dear Professor, Thank you for the clear explanation. I appreciate your help and support I'll
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Fiber Data hub and MD value
Dear Professor, Thank you for the clear explanation. I appreciate your help and support I'll
May 20
Karen Aguilar Mateu
,
Frank Yeh
2
May 18
GUI AutoTrack versus CLI AutoTrack
Hello Karen, The GUI AutoTrack and CLI --action=atk are not always directly comparable. In the GUI,
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GUI AutoTrack versus CLI AutoTrack
Hello Karen, The GUI AutoTrack and CLI --action=atk are not always directly comparable. In the GUI,
May 18
Michael-John Beltejar
,
Frank Yeh
2
May 15
GPU acceleration
DSI Studio only uses the GPU for image registration, normalization, and segmentation. On Fri, May 15,
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GPU acceleration
DSI Studio only uses the GPU for image registration, normalization, and segmentation. On Fri, May 15,
May 15
Mark Pinsk
, …
Frank Yeh
8
May 14
CLI correlational tractography aborts at "create tract figures" — QWidget without QApplication (May 12 2026 build)
Yes, I would do that using command history. On Thu, May 14, 2026 at 12:03 PM 'Mark Pinsk' via
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CLI correlational tractography aborts at "create tract figures" — QWidget without QApplication (May 12 2026 build)
Yes, I would do that using command history. On Thu, May 14, 2026 at 12:03 PM 'Mark Pinsk' via
May 14
Zubina Zafar
,
Frank Yeh
2
May 14
Inquiry about Automating volume extraction across a large set of T1-Weighted MRI scans
The GUI also support batch processing using command history: eg wk1 videos at practicum.labsolver.org
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Inquiry about Automating volume extraction across a large set of T1-Weighted MRI scans
The GUI also support batch processing using command history: eg wk1 videos at practicum.labsolver.org
May 14
yy z
, …
Frank Yeh
6
May 14
Connectivity Matrix Export
On Thu, May 14, 2026 at 12:02 PM 柯酥卤 <kesul...@gmail.com> wrote: 我所有操作都和提问者一致的话应该采用什么指令能够生成这个
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Connectivity Matrix Export
On Thu, May 14, 2026 at 12:02 PM 柯酥卤 <kesul...@gmail.com> wrote: 我所有操作都和提问者一致的话应该采用什么指令能够生成这个
May 14
Juliana Hougland
,
Frank Yeh
4
May 12
Brainnetome Atlas Naming
The atlas will be updated in the next coming release (in few days). At the time being, you may
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Brainnetome Atlas Naming
The atlas will be updated in the next coming release (in few days). At the time being, you may
May 12
Patrick Sadil
,
Frank Yeh
2
May 6
Thresholds for New "Bad Slices" Metric
I would recommend using Neighboring DWI Correlations (NDC) to identify potential outliers.
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Thresholds for New "Bad Slices" Metric
I would recommend using Neighboring DWI Correlations (NDC) to identify potential outliers.
May 6
Caesar
,
Frank Yeh
8
May 5
Issue compiling latest DSI Studio (with TumorSynth plugin) on macOS
Glad to know that it works on your side. If you have any suggestions, please feel free to let me know
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Issue compiling latest DSI Studio (with TumorSynth plugin) on macOS
Glad to know that it works on your side. If you have any suggestions, please feel free to let me know
May 5
Finian Keleher
,
Frank Yeh
4
May 4
Controlling for site / lesions in TBI studies
For the patients with lesions, do you think leaving lesions unmasked could introduce issues at later
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Controlling for site / lesions in TBI studies
For the patients with lesions, do you think leaving lesions unmasked could introduce issues at later
May 4
이익성
,
Frank Yeh
2
May 1
Inquiry regarding setting longitudinal variables in Correlational Tractography (Version: Apr 18 2026)
Sorry for the delayed reply. > In the "Study Variables" section, I cannot find an option
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Inquiry regarding setting longitudinal variables in Correlational Tractography (Version: Apr 18 2026)
Sorry for the delayed reply. > In the "Study Variables" section, I cannot find an option
May 1
Anna Kannonier
,
Frank Yeh
4
Apr 22
Three groups setup
I computed the difference maps I assume you get a new database storing the longitudinal changes here.
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Three groups setup
I computed the difference maps I assume you get a new database storing the longitudinal changes here.
Apr 22
Edoardo Vattimo
,
Frank Yeh
4
Apr 19
DSI Studio Built-in Atlases - MNI Space
Perfec. Thank you so much, Frank! On Mon, Mar 23, 2026 at 4:20 PM Frank Yeh <fran...@gmail.com
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DSI Studio Built-in Atlases - MNI Space
Perfec. Thank you so much, Frank! On Mon, Mar 23, 2026 at 4:20 PM Frank Yeh <fran...@gmail.com
Apr 19
taravat rasooli
Apr 14
Clarification on the Statistical Interpretation of Bundle-Specific FDR in Connectometry Output
Dear Dr. Yeh, Thank you very much for developing DSI Studio and making it such a useful tool. It has
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Clarification on the Statistical Interpretation of Bundle-Specific FDR in Connectometry Output
Dear Dr. Yeh, Thank you very much for developing DSI Studio and making it such a useful tool. It has
Apr 14
Frank Yeh
,
Braeden Rodriguez
5
Apr 13
Re: [dsi-studio] Adding new atlases to DSI studio
There are many tools available, such FSL, SPM, ANT...etc. On Mon, Apr 13, 2026 at 12:04 PM Braeden
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Re: [dsi-studio] Adding new atlases to DSI studio
There are many tools available, such FSL, SPM, ANT...etc. On Mon, Apr 13, 2026 at 12:04 PM Braeden
Apr 13
Takahiro Yokoyama
,
Frank Yeh
2
Apr 8
Questions regarding 2D mosaic export and "Recognize and Cluster" for rat brain data
To display and export your results as a 2D mosaic, please navigate to the "Step T3c" tab.
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Questions regarding 2D mosaic export and "Recognize and Cluster" for rat brain data
To display and export your results as a 2D mosaic, please navigate to the "Step T3c" tab.
Apr 8
Steven J Granger
,
Frank Yeh
10
Apr 2
Data Quality Question
yes On Thu, Apr 2, 2026 at 11:48 AM Steven J Granger <gran...@uci.edu> wrote: > > Hi
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Data Quality Question
yes On Thu, Apr 2, 2026 at 11:48 AM Steven J Granger <gran...@uci.edu> wrote: > > Hi
Apr 2
Drew Parker
,
Frank Yeh
2
Mar 30
Apptainer Qt library problems
Hi Drew, The libQt6Core.so.6 error you are seeing is a common issue when running newer Qt6-based
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Apptainer Qt library problems
Hi Drew, The libQt6Core.so.6 error you are seeing is a common issue when running newer Qt6-based
Mar 30
Xu Zhang
,
Frank Yeh
2
Mar 30
Seeking help with batch generating 116x116 Connectivity Matrices via AAL116 atlas
Dear Xu Zhang, Batch Processing and Atlas Loading The AAL116 atlas is a gray matter parcellation
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Seeking help with batch generating 116x116 Connectivity Matrices via AAL116 atlas
Dear Xu Zhang, Batch Processing and Atlas Loading The AAL116 atlas is a gray matter parcellation
Mar 30
Valerie Sydnor
,
Frank Yeh
2
Mar 29
Filtering whole-brain tractography using autotrack atlas
First convert atk bundles as region NIFTI files. You may use --action=atk --source=sub.fz --action=
unread,
Filtering whole-brain tractography using autotrack atlas
First convert atk bundles as region NIFTI files. You may use --action=atk --source=sub.fz --action=
Mar 29
Valerie Sydnor
,
Frank Yeh
7
Mar 29
Scalar metric-weighted tract endpoint mask
Thank you for the help here, Frank. I was able to successfully accomplish this at the regional level
unread,
Scalar metric-weighted tract endpoint mask
Thank you for the help here, Frank. I was able to successfully accomplish this at the regional level
Mar 29
Luisa G
,
Frank Yeh
3
Mar 25
Right frontal tracking issues (ACC-DLPFC-OFC)
Sorry for the long delay in responding to this issue. Most DWI data has large distortion and signal
unread,
Right frontal tracking issues (ACC-DLPFC-OFC)
Sorry for the long delay in responding to this issue. Most DWI data has large distortion and signal
Mar 25
shashank bansal
,
Frank Yeh
4
Mar 23
Question about neonatal UF tractography differences in DSI Studio
Sorry for the late reply. > > I am currently investigating brain connectivity across different
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Question about neonatal UF tractography differences in DSI Studio
Sorry for the late reply. > > I am currently investigating brain connectivity across different
Mar 23
Aesha Jain
,
Frank Yeh
5
Mar 23
Trouble generating hand motor CST tracts using TMS points as ROI
Thank you so much for your help, frank. I tried with the smaller step size and changed my tracking
unread,
Trouble generating hand motor CST tracts using TMS points as ROI
Thank you so much for your help, frank. I tried with the smaller step size and changed my tracking
Mar 23
Dearbhla Cullinane
,
Frank Yeh
2
Mar 23
frank.yeh@gmail.com
In GUI, there is an option on the right upper corner to specify the default saving format. In CLI,
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frank.yeh@gmail.com
In GUI, there is an option on the right upper corner to specify the default saving format. In CLI,
Mar 23
Darren Lee
, …
Frank Yeh
6
Mar 16
Fiber-Tracking Parameter Setting (Command Line)
Thank you for reporting this issue. The atk did not use parameter_id, and I updated the code to use
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Fiber-Tracking Parameter Setting (Command Line)
Thank you for reporting this issue. The atk did not use parameter_id, and I updated the code to use
Mar 16