DSI Studio

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Daria Sharapova, Frank Yeh3

3:00 AM

Displaying All Slices for Correlational Tractography in DSI Studio

Thanks a lot for your help. I have managed to get something like this: Can this be saved as pdf or

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Displaying All Slices for Correlational Tractography in DSI Studio

Thanks a lot for your help. I have managed to get something like this: Can this be saved as pdf or

3:00 AM

Alexander Ershov, … Frank Yeh22

Jul 25

Tracts recognition and clustering via GUI and CLI

The new DSI Studio release (the Hou version) at https://github.com/frankyeh/DSI-Studio/releases/tag/

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Tracts recognition and clustering via GUI and CLI

The new DSI Studio release (the Hou version) at https://github.com/frankyeh/DSI-Studio/releases/tag/

Jul 25

Mark Vernon, Frank Yeh4

Jul 22

t-statistics tract rendering

Sorry for my delayed checking this issue. I hope to investigate this and get back to you soon. Frank

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t-statistics tract rendering

Sorry for my delayed checking this issue. I hope to investigate this and get back to you soon. Frank

Jul 22

egemen gok, Frank Yeh2

Jul 22

Which citations should I use for Auto-tracking and Inserting T1W Slices

For our article, I have to cite some modules from DSI-Studio such as Auto-tracking and Registering

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Which citations should I use for Auto-tracking and Inserting T1W Slices

For our article, I have to cite some modules from DSI-Studio such as Auto-tracking and Registering

Jul 22

Jia Son, Frank Yeh2

Jul 22

How to Use Slice/Segment Tissue via CLI in DSI Studio?

The function is from UNet Studio. You may download it and it's GUI allows for processing large

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How to Use Slice/Segment Tissue via CLI in DSI Studio?

The function is from UNet Studio. You may download it and it's GUI allows for processing large

Jul 22

egemen gok, Frank Yeh2

Jul 22

Segmentations are not rendered well, need to fix this

Likely the input region has low resolution. Increasing the resolution may work, or you may create

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Segmentations are not rendered well, need to fix this

Likely the input region has low resolution. Increasing the resolution may work, or you may create

Jul 22

Matthew Cieslak, … Frank Yeh16

Jul 20

Using an alternative contrast for autotrack registration

This was a bug (fixed). You may update DSI Studio and see if it works. Sorry about the hassle. On Sat

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Using an alternative contrast for autotrack registration

This was a bug (fixed). You may update DSI Studio and see if it works. Sorry about the hassle. On Sat

Jul 20

Giorgio Marcello, … Frank Yeh5

Jul 20

Error in conversion DICOM and Nii to SRC in fetal MRI

You may try using dcm2nii to convert the DICOM and see if the generated NIFTI works. If not, it is

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Error in conversion DICOM and Nii to SRC in fetal MRI

You may try using dcm2nii to convert the DICOM and see if the generated NIFTI works. If not, it is

Jul 20

Yonglun Ji, … DSI Studio12

Jul 18

Inquiry about Batch Processing Performance and CLI-GUI Differences in Fiber Tracking

--export=qa will export qa throughout the entire tracks. --export=stat is the averaged value The

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Inquiry about Batch Processing Performance and CLI-GUI Differences in Fiber Tracking

--export=qa will export qa throughout the entire tracks. --export=stat is the averaged value The

Jul 18

Jul 16

Brainnectome is a different atlas. Google "Brainnectome" should bring you to the official

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Brainnectome is a different atlas. Google "Brainnectome" should bring you to the official

Jul 16

Gabriela Epihova, Frank Yeh3

Jul 15

Inconsistent connectivity matrix results

Hi Frank, Many thanks for your quick reply. I see.. Still I would expect similar results in the

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Inconsistent connectivity matrix results

Hi Frank, Many thanks for your quick reply. I see.. Still I would expect similar results in the

Jul 15

Benjamin Combes, Frank Yeh2

Jul 9

Database file for controls - MRI mouse study

You can average all into just one FIB file using the template average function. The averaged FIB file

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Database file for controls - MRI mouse study

You can average all into just one FIB file using the template average function. The averaged FIB file

Jul 9

Brady Williamson, Frank Yeh2

Jul 8

Probabilistic ROI Color Gradient

Currently we cannot do this in DSI Studio. Frank

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Probabilistic ROI Color Gradient

Currently we cannot do this in DSI Studio. Frank

Jul 8

Hannah Lindsey, Frank Yeh2

Jul 8

different connectometry results on PC vs Mac

I would compare the console output to see if there is a hint. One possibility is that the effect size

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different connectometry results on PC vs Mac

I would compare the console output to see if there is a hint. One possibility is that the effect size

Jul 8

Jadin Nassif, Frank Yeh3

Jul 8

Batch Renaming [Step B1b] to Preserve Subject ID Number

Got it. Thank you! On Sunday, July 7, 2024 at 11:11:53 PM UTC-4 Frank Yeh wrote: I would use dcm2nii

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Batch Renaming [Step B1b] to Preserve Subject ID Number

Got it. Thank you! On Sunday, July 7, 2024 at 11:11:53 PM UTC-4 Frank Yeh wrote: I would use dcm2nii

Jul 8

Gabriel Nasr, Frank Yeh2

Jul 5

Eddy Correction without fieldmap

To the best ofy knowledge, FSL's "eddy" does need a field map. Good day, When

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Eddy Correction without fieldmap

To the best ofy knowledge, FSL's "eddy" does need a field map. Good day, When

Jul 5

Mindy Westlund Schreiner, Frank Yeh2

Jul 5

Here's the example processed results: https://brain.labsolver.org/abcd.html I had previously seen

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Here's the example processed results: https://brain.labsolver.org/abcd.html I had previously seen

Jul 5

高橋航来, Frank Yeh2

Jul 4

DTI or GQI in fiber tracking with DTI sequence?

Yes, Yes. Frank On Thu, Jul 4, 2024 at 1:53 PM 高橋航来 <kokitakah...@keio.jp> wrote: Dear

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DTI or GQI in fiber tracking with DTI sequence?

Yes, Yes. Frank On Thu, Jul 4, 2024 at 1:53 PM 高橋航来 <kokitakah...@keio.jp> wrote: Dear

Jul 4

Steven Jay Granger, Frank Yeh2

Jul 3

Citation for FA Measures Calculated by low b-value

I could not recall a specific one, but there are many publications about the optimal b-value for DTI.

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Citation for FA Measures Calculated by low b-value

I could not recall a specific one, but there are many publications about the optimal b-value for DTI.

Jul 3

Sean Li, Frank Yeh6

Jul 3

Tract based measurements in post-connectometry analysis

Hello Dr. Yeh, Thank you for your response. I will look into this. Sean On Monday, July 1, 2024 at 9:

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Tract based measurements in post-connectometry analysis

Hello Dr. Yeh, Thank you for your response. I will look into this. Sean On Monday, July 1, 2024 at 9:

Jul 3

Jul 3

import connectivity matrix from another application

Yes, the matrix is MAT -V4 format. You may modify it from MATLAB or python. Best regards, Frank On

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import connectivity matrix from another application

Yes, the matrix is MAT -V4 format. You may modify it from MATLAB or python. Best regards, Frank On

Jul 3

Rebecca Roth, Frank Yeh2

Jul 2

Question about command line FIB file construction- unknown eddy error

Are you able to run eddy directly from the command line? This may help rule out possible cause of

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Question about command line FIB file construction- unknown eddy error

Are you able to run eddy directly from the command line? This may help rule out possible cause of

Jul 2

Newton Cho, Frank Yeh2

Jun 30

Yes, bad slices are not as useful as NDC. It is only a reference. Best, Frank Dear Frank, Just going

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Yes, bad slices are not as useful as NDC. It is only a reference. Best, Frank Dear Frank, Just going

Jun 30

wenlon...@epfl.ch, … Frank Yeh12

Jun 27

Some question about starting the command line on Mac

Glad to hear it! On Thu, Jun 27, 2024 at 3:34 PM Giovanni Videtta <gianni...@gmail.com>

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Some question about starting the command line on Mac

Glad to hear it! On Thu, Jun 27, 2024 at 3:34 PM Giovanni Videtta <gianni...@gmail.com>

Jun 27

Alberto Braga, Frank Yeh3

Jun 27

Differences beween QA and FA in connectometry analysis

I am sorry for missing this thread and thanks for following up. >> I have run the analysis

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Differences beween QA and FA in connectometry analysis

I am sorry for missing this thread and thanks for following up. >> I have run the analysis

Jun 27

Anne-Cecile Lesage, Frank Yeh2

Jun 24

You may check out tutorial videos at https://practicum.labsolver.org/ about these questions. Best

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You may check out tutorial videos at https://practicum.labsolver.org/ about these questions. Best

Jun 24

Gabriel Nasr, Frank Yeh3

Jun 24

Determining Seed Termination Limit & QA Threshold

Hi Frank, Thank you for your quick response. I will let you know if I have any further inquiries.

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Determining Seed Termination Limit & QA Threshold

Hi Frank, Thank you for your quick response. I will let you know if I have any further inquiries.

Jun 24

Mark Vernon, Frank Yeh5

Jun 20

White matter bundle connections

The exact value depends on the tract and also the data quality. wk3 video covers some recommendations

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White matter bundle connections

The exact value depends on the tract and also the data quality. wk3 video covers some recommendations

Jun 20

Борщик Борщевой, Frank Yeh4

Jun 20

Correlational tractography

The wk2 and wk3 videos covered this topic: practicum.labsolver.org You may also check out wk7 about

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Correlational tractography

The wk2 and wk3 videos covered this topic: practicum.labsolver.org You may also check out wk7 about

Jun 20

Gabriel Nasr, Frank Yeh3

Jun 17

Opening a Slab in DSI Studio

Hello Frank, Thank you for your response. I went through the groups and I found this conversation

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Opening a Slab in DSI Studio

Hello Frank, Thank you for your response. I went through the groups and I found this conversation

Jun 17

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