Dear Dr. Yeh, First of all, thank you for developing DSI Studio and the fantastic AutoTrack framework

Hi Tipakorn, The Fiber Data Hub .fz files may not include MD by default. This does not mean that MD

Sorry for the error. This should be fixed in the updated version. Frank On Mon, Jun 8, 2026 at 11:45

Hi Maryam, Thank you for the detailed questions. For AutoTrack tolerance, you can enter a single

Hi Ivan, Sorry for my delayed reply. You may update DSI Studio and see if the problem is solved. If

Hi Irem, These are good methodological questions. If all subjects are reconstructed using QSDR, the

I will check and get back to you. Frank

There is no normalization step applied to the matrix values. Frank On Tue, Jun 30, 2026 at 9:47 AM

You may check out the first week first at practicum.labsolver.org about command history. The command

Hi, I am running an analysis where I have extracted tract statistics from part of the ARAS that

Hi Frank, I am trying to reproduce the HCP-1065 fiber template starting from the individual subject *

No worries, I'm using the Ubuntu version. Thanks again, Mark On Friday, June 26, 2026 at 11:58:15

Much appreciated for reporting the issue! Frank On Fri, Jun 26, 2026 at 8:45 AM Juliana Hougland <

Hi Frank, Just tried it out too and it works beautifully! Thank you to both you and Hannah for

I fixed a bug yesterday, and likely updating DSI Studio can solve this problem. If you use DTI to

Hi Michael, The .mat V4 file generated by DSI Studio contains a space in the matrix name, which is

There are also minimum length, maximum length, ...etc criteria to remove tracts. You may out tutorial

I uploaded DSI Studio. Could you download the new version and see if it works? If still not working

I did a code review, and you are right. The current CLI setting doesn't allow turning this off. I

Sorry about the bug. Do you have the exact steps to reproduce the error? (eg using .fz file at Fiber

Hi Frank, Got it! Thank you again for all the explanations. Best, Allison Frank Yeh <frank.yeh@

There are two related ways to do this. First, if you only want to identify fibers that pass through

Thanks Frank. I used the brain.mgz from freesurfer (converted to .nii) and this worked. Best, Josh On

Hi Frank, Thank you for explaining this. We will try the analysis on the neonate template. Best, Josh

Hi Steven, The current tractography atlas uses a different tract hierarchy from the older atlas.

Dear Taravat, There is no separate peer-reviewed paper specifically for ROI-constrained correlational

Hello Karen, The GUI AutoTrack and CLI --action=atk are not always directly comparable. In the GUI,

DSI Studio only uses the GPU for image registration, normalization, and segmentation. On Fri, May 15,

Yes, I would do that using command history. On Thu, May 14, 2026 at 12:03 PM 'Mark Pinsk' via

The GUI also support batch processing using command history: eg wk1 videos at practicum.labsolver.org