DSI Studio

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Manuel Leão, Frank Yeh2

Apr 22

What's the underlying process of using FA, MD, RD while using the QSDR fiber resolving method

> When we export Diffusion tensor metrics (FA, RD, MD) while selecting QSDR in Step T3, what

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What's the underlying process of using FA, MD, RD while using the QSDR fiber resolving method

> When we export Diffusion tensor metrics (FA, RD, MD) while selecting QSDR in Step T3, what

Apr 22

Maryam Shapourjani, Frank Yeh9

Apr 22

Shape analysis paper and DSI Studio

Sorry, it seems to me that there is no good answer to your questions. On Sun, Apr 21, 2024 at 2:31 PM

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Shape analysis paper and DSI Studio

Sorry, it seems to me that there is no good answer to your questions. On Sun, Apr 21, 2024 at 2:31 PM

Apr 22

Apr 22

To save tracks in T1w space from command line

Dear, Hi, I tried the following command to save the .trk file in T1w space, however the output is

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To save tracks in T1w space from command line

Dear, Hi, I tried the following command to save the .trk file in T1w space, however the output is

Apr 22

Manuel Leão, Frank Yeh2

Apr 21

ERROR: invalid argumentd for did you forget to put double dash '--' in front of the argument

You can only put the double dash part in the GUI's console. The script you get is for Windows BAT

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ERROR: invalid argumentd for did you forget to put double dash '--' in front of the argument

You can only put the double dash part in the GUI's console. The script you get is for Windows BAT

Apr 21

Zhengyu Lin, Frank Yeh2

Apr 20

convert FSL bedpostX output to DSI format

bedpostx output results in NIFTI files, which can be directly used by DSI Studio with a FIB file. To

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convert FSL bedpostX output to DSI format

bedpostx output results in NIFTI files, which can be directly used by DSI Studio with a FIB file. To

Apr 20

joseph...@gmail.com, … Frank Yeh8

Apr 17

Automatic Tract Recognition

> > Dear Frank, > > Regarding the automatic tract recognition, I still don't

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Automatic Tract Recognition

> > Dear Frank, > > Regarding the automatic tract recognition, I still don't

Apr 17

Jamie Drummond, Frank Yeh2

Apr 17

Marking / exporting tracts for navigation

We can implement new routine to make this possible, but would need a sample to test. Any possibility

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Marking / exporting tracts for navigation

We can implement new routine to make this possible, but would need a sample to test. Any possibility

Apr 17

Jerry Chen, … Xu Chen4

Apr 12

Images getting distorted when creating the SRC file from DWIs in NIFTI.

Thank you, Frank! So we continued the analysis and got to step T3 for some ROI-based tracking. The

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Images getting distorted when creating the SRC file from DWIs in NIFTI.

Thank you, Frank! So we continued the analysis and got to step T3 for some ROI-based tracking. The

Apr 12

Ieva Andrulyte, Frank Yeh2

Apr 12

Connectometry tract colour

It is the white mater mask. Frank Ieva Andrulyte <andrul...@gmail.com> 於 2024年4月12日週五上午5:

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Connectometry tract colour

It is the white mater mask. Frank Ieva Andrulyte <andrul...@gmail.com> 於 2024年4月12日週五上午5:

Apr 12

Hannah Lindsey, … Erin Bondy16

Apr 11

Unable to create connectometry database

Wonderful! Thank you so much, Frank! On Thursday, April 11, 2024 at 10:14:26 AM UTC-4 Frank Yeh wrote

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Unable to create connectometry database

Wonderful! Thank you so much, Frank! On Thursday, April 11, 2024 at 10:14:26 AM UTC-4 Frank Yeh wrote

Apr 11

Alexis Bonis, DSI Studio2

Apr 11

Question on qform/sform values after correction

For any NIFTI images saved by DSI Studio, they will be rotated to LPS orientation. On Thursday, April

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Question on qform/sform values after correction

For any NIFTI images saved by DSI Studio, they will be rotated to LPS orientation. On Thursday, April

Apr 11

Manuel Leão, Frank Yeh3

Apr 11

Question on QSDR Reconstruction and Automatic Recognition

Sorry, I forgot to mention the Quality control. It found 1 outlier. Curiosly, out of the 5 bad slices

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Question on QSDR Reconstruction and Automatic Recognition

Sorry, I forgot to mention the Quality control. It found 1 outlier. Curiosly, out of the 5 bad slices

Apr 11

fauxv...@gmail.com, Frank Yeh3

Apr 11

Currently it is not feasible. I would suggest creating a customized mask in NIFTI file and supply

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Currently it is not feasible. I would suggest creating a customized mask in NIFTI file and supply

Apr 11

Gabriela Oršová, Frank Yeh2

Apr 11

versions problem

Hi Gabriela, Sorry about the issue. Did you use the same FIB file? Also, could you post a figure of

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versions problem

Hi Gabriela, Sorry about the issue. Did you use the same FIB file? Also, could you post a figure of

Apr 11

Niels Foit, Frank Yeh2

Apr 10

Connectivity matrices

Sorry for the late reply. I would average the matrices (my two cents). On Wed, Apr 3, 2024 at 10:26

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Connectivity matrices

Sorry for the late reply. I would average the matrices (my two cents). On Wed, Apr 3, 2024 at 10:26

Apr 10

Hossein Bahreinizad, Frank Yeh6

Apr 9

Issue with exporting (scale and position)

The in-plane resolution is 1.95mm, not 2mm. Could this be the reason? You may multiply tracts

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Issue with exporting (scale and position)

The in-plane resolution is 1.95mm, not 2mm. Could this be the reason? You may multiply tracts

Apr 9

Frank Oltmanns, Frank Yeh3

Apr 9

Problem creating src file

The images are only one b0. You may check out tutorial videos about what a complete set of diffusion

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Problem creating src file

The images are only one b0. You may check out tutorial videos about what a complete set of diffusion

Apr 9

wenbin Pang, Frank Yeh3

Apr 6

How to save the dti_fa.nii.gz, txx.nii.gz, etc.?

Thank you so much! Your support is greatly appreciated！在2024年4月3日星期三 UTC+8 21:47:49<Frank Yeh>

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How to save the dti_fa.nii.gz, txx.nii.gz, etc.?

Thank you so much! Your support is greatly appreciated！在2024年4月3日星期三 UTC+8 21:47:49<Frank Yeh>

Apr 6

wenbin Pang, Frank Yeh3

Apr 6

Can I apply the [Corrections][TOPUP/EDDY] for multiple SRC files in the GUI?

Great work! Thank you so much, Frank 在2024年4月7日星期日 UTC+8 01:06:27<Frank Yeh> 写道： It should be,

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Can I apply the [Corrections][TOPUP/EDDY] for multiple SRC files in the GUI?

Great work! Thank you so much, Frank 在2024年4月7日星期日 UTC+8 01:06:27<Frank Yeh> 写道： It should be,

Apr 6

Francisco Espinoza Romero, Frank Yeh2

Apr 4

Error: cannot open file at...

Looks like an access issue. I would suggest place DSI Studio in a different drive or test on another

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Error: cannot open file at...

Looks like an access issue. I would suggest place DSI Studio in a different drive or test on another

Apr 4

Anoosha Pai, Frank Yeh6

Apr 4

DSI Studio Crashes while trying to upload .trk files

Hi Frank, This is what I get when I try to load any file to get to the main window. Please Advise. On

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DSI Studio Crashes while trying to upload .trk files

Hi Frank, This is what I get when I try to load any file to get to the main window. Please Advise. On

Apr 4

Tong Wu, Frank Yeh13

Apr 3

Tracts and ROIs are not aligned in MNI space

This video also tells about this topic: https://www.youtube.com/watch?v=IVZIQRUBepw On Tue, Apr 2,

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Tracts and ROIs are not aligned in MNI space

This video also tells about this topic: https://www.youtube.com/watch?v=IVZIQRUBepw On Tue, Apr 2,

Apr 3

William McCuddy, Frank Yeh4

Apr 2

General Questions Regarding Distribution of B Values for Grid scheme Converted to q Space

This is half sphere acquisition. Here needs to plot its corresponding full sphere: For each sample

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General Questions Regarding Distribution of B Values for Grid scheme Converted to q Space

This is half sphere acquisition. Here needs to plot its corresponding full sphere: For each sample

Apr 2

Jiahe WU, Frank Yeh6

Apr 2

Different result from different systems

If you can send the db.fib.gz files and demographics to me (using the private link provided on the

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Different result from different systems

If you can send the db.fib.gz files and demographics to me (using the private link provided on the

Apr 2

Raul Dey, Frank Yeh2

Apr 1

Fiber tracking across a 2D space

It is possible, but need to compute the local fiber orientation (aka fixel) from these lines and save

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Fiber tracking across a 2D space

It is possible, but need to compute the local fiber orientation (aka fixel) from these lines and save

Apr 1

Tong Wu, Frank Yeh6

Mar 30

Saving tracts in MNI space

Sorry about the issue. Could you provide the steps to reproduce the issue? On Thu, Mar 28, 2024 at 11

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Saving tracts in MNI space

Sorry about the issue. Could you provide the steps to reproduce the issue? On Thu, Mar 28, 2024 at 11

Mar 30

William McCuddy, Frank Yeh6

Mar 29

Eddy correction error

Thank you for this information, Frank!. On Wednesday, March 27, 2024 at 2:24:36 PM UTC-7 Frank Yeh

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Eddy correction error

Thank you for this information, Frank!. On Wednesday, March 27, 2024 at 2:24:36 PM UTC-7 Frank Yeh

Mar 29

Alexis Bonis, Frank Yeh6

Mar 28

Creation of a new .fib file

Yes, use the reshape function. Frank Hello Frank, I'm sorry for my very late reply, but I tried a

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Creation of a new .fib file

Yes, use the reshape function. Frank Hello Frank, I'm sorry for my very late reply, but I tried a

Mar 28

Peyton Fair, Frank Yeh3

Mar 28

Unable to open any files in DSI... Application stops responding

It seems that you have found the solution (ie save to Desktop) On Thu, Mar 28, 2024 at 4:45 PM Peyton

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Unable to open any files in DSI... Application stops responding

It seems that you have found the solution (ie save to Desktop) On Thu, Mar 28, 2024 at 4:45 PM Peyton

Mar 28

ramtilak gattu, Frank Yeh2

Mar 28

differential tracking for automaic fiber tracking regions

Currently there is no readily available function to do this, but there is a workaround: Use tract to

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differential tracking for automaic fiber tracking regions

Currently there is no readily available function to do this, but there is a workaround: Use tract to

Mar 28

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