This issue is fixed now.
Steps followed -
1. Created a bundle certificate for chained certificates. Bundle certificates looks like as below - (name it bundle.crt)
-----BEGIN CERTIFICATE-----
MIIFzDCCBLSgAwIBAgIQSNxNfTY43
-----END CERTIFICATE-----
-----BEGIN CERTIFICATE-----
MIIFzDCCBLSgAwIBAgIQSNxNfTY43
-----END CERTIFICATE-----
-----BEGIN CERTIFICATE-----
MIIFzDCCBLSgAwIBAgIQSNxNfTY43
-----END CERTIFICATE-----
2. Convert bundle certificate in pkcs12 format using openssl - (output file keystore.p12)
openssl pkcs12 -export -in bundle.crt -inkey privateKey -out keystore.p12 -CAfile AddTrustExternalCARoot.crt
here privateKey is the key which is genereated while creating Certificate Signing Request.
3. Import pkcs12 into keystore.
keytool -importkeystore -srckeystore keystore.p12 -destkeystore Mykeystore.keystore -srcstoretype pkcs12 -deststoretype jceks
4. Just import your domain certificate in truststore. No need to import bundle in truststore.