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>> build sources in PX4Firmware/modules and merge them to my ArduCopter code?Which modules were you looking to merge into ArduPilot?
>>I was a bit confused with the naming. I thought PX4Firmware is the same as px4-quad, hexa or whatever. But actually they are referring to different project and I just need to clone PX4 project rather than arduCopterThe Ardupilot codebase only uses the PX4Firmware for pixhawk-class hardware for a few drivers, no flight code, because there was cooperation between the projects to develop the pixhawk hardware. For the older 8-bit (no longer supported) or Linux builds the PX4Firmware is ignored. To build ardupilot, you clone ardupilot/ardupilot and it's submodules will pull in what you need from px4firmware automatically. You don't clone /px4firmware directly. We used to have a copy/fork you cloned, but it's all built in as a submodule for about a year now.
>> PX4 is mainly for Qground control while Arducopter is for Mission Planner.QGC works on PX4 and ArduPilot. MP only works for ArduPilot.