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1–8 of 8
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Web site:
https://fromem03.u.hpc.
mssm.edu/dnenrich
Or:
https://statgen.bitbucket.io/
dnenrich
Software:
https://bitbucket.org/statgen/
dnenrich
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mcri...@gmail.com
,
Menachem Fromer
4
2/22/18
Command tutorial
Since dnenrich uses permutation, the p-value (under the dnenrich null model) of the particular event
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Command tutorial
Since dnenrich uses permutation, the p-value (under the dnenrich null model) of the particular event
2/22/18
Ingo Ruczinski
,
Daniel Howrigan
2
5/19/17
Fwd: dnenrich
Hi Ingo, Here's my quick take on 'functional effect' and 'tri-nucleotide context'
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Fwd: dnenrich
Hi Ingo, Here's my quick take on 'functional effect' and 'tri-nucleotide context'
5/19/17
chloe.p....@gmail.com
,
Menachem Fromer
3
12/25/15
Gene size matrix clarification
Hi Chloe, If used, the effective gene size for an individual should reflect the number of possible
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Gene size matrix clarification
Hi Chloe, If used, the effective gene size for an individual should reflect the number of possible
12/25/15
Menachem Fromer
12/25/15
Re: Dnenrich
Hi Chloe, See answers below. Best, Menachem I'm currently a medical student at Stanford working
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Re: Dnenrich
Hi Chloe, See answers below. Best, Menachem I'm currently a medical student at Stanford working
12/25/15
chloe.p....@gmail.com
,
Menachem Fromer
2
9/30/15
Single gene enrichment
Yes, that's how we describe doing this in example #2 here: https://psychgen.u.hpc.mssm.edu/
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Single gene enrichment
Yes, that's how we describe doing this in example #2 here: https://psychgen.u.hpc.mssm.edu/
9/30/15
Menachem Fromer
,
Chloe O'Connell
3
9/24/15
Re: Mutation classification matrix for dnenrich
Indeed, missense IS INCLUDED in the NS category. What you exactly decide to test is somewhat of a
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Re: Mutation classification matrix for dnenrich
Indeed, missense IS INCLUDED in the NS category. What you exactly decide to test is somewhat of a
9/24/15
shahar...@mail.huji.ac.il
,
Menachem Fromer
2
6/11/15
Multiple tests correction
Hi Shahar, You indeed still need to correct the tests for multiple testing of the various gene sets.
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Multiple tests correction
Hi Shahar, You indeed still need to correct the tests for multiple testing of the various gene sets.
6/11/15
Chey Loveday
,
Menachem Fromer
2
1/14/15
DNENRICH - question re the gene recurrence statistic
Hi Chey, Thanks for the question. This indeed is exactly what the software was intended to do. You
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DNENRICH - question re the gene recurrence statistic
Hi Chey, Thanks for the question. This indeed is exactly what the software was intended to do. You
1/14/15