Genome conference 2012 and Personal Genome Project python & data download

[Jonathan Cline]

The Personal Genome Project must be the open science project producing the largest quantity of open data in the history of mankind.  Apparently in the next few months, there will around a hundred people with maintained human cell lines, and their full genomic sequences will soon follow (reference: http://chirpstory.com/li/6877 ).  To paraphrase:  PGP will sequence about a dozen human genomes per month.   This is a feast of data for computational bio projects.  It also means I'll be immortalized in a test tube :-D which is quite cute.  (Perhaps I might survive the zombie apocalypse?)

Best source for info updates: http://blog.personalgenomes.org/

All data is under CC0 license (completely free to use/re-use)
and available at their site, http://blog.personalgenomes.org/2012/04/02/get-evidence-guides/
with full download of the data, http://evidence.personalgenomes.org/download

Includes a git repository for the host software: https://github.com/tomclegg/get-evidence
which is written in Python for the comp bio, and PHP for the web hosting.


## Jonathan Cline
## jcl...@ieee.org
## Mobile: +1-805-617-0223
########################

[Bryan Bishop]

On Sat, May 5, 2012 at 1:53 PM, Jonathan Cline <jnc...@gmail.com> wrote:

Best source for info updates: http://blog.personalgenomes.org/

All data is under CC0 license (completely free to use/re-use)
and available at their site, http://blog.personalgenomes.org/2012/04/02/get-evidence-guides/
with full download of the data, http://evidence.personalgenomes.org/download

Includes a git repository for the host software: https://github.com/tomclegg/get-evidence
which is written in Python for the comp bio, and PHP for the web hosting.

There was also the recent 1000 Genomes Project release on AWS S3...

http://aws.typepad.com/aws/2012/03/the-1000-genomes-project.html

"The data is vast (the current set weighs in at over 200Tb), so hosting the data on S3"

"today we're making the latest dataset available to all, including results from sequencing the DNA of approximately 1,700 people"

http://aws.amazon.com/1000genomes
ftp://ftp-trace.ncbi.nlm.nih.gov/1000genomes
ftp://ftp6.ncbi.nlm.nih.gov/
ftp://ftp.1000genomes.ebi.ac.uk/vol1/

(A thousand? Where's my billions and trillions!)

- Bryan
http://heybryan.org/
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