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to disdogsvete
Components of downloadable package:
ProbIDALL.jar This is the main package of software to identify peptides from MS/MS spectra using protein sequence database (FASTA format). This jar file includes both the source code and binary class files.
probid.param This is the parameter file for doing peptide searches.
example.dta This is the file format of MS/MS spectra that ProbID takes.
runprobid.pl This is the script that takes a your_file.mzXML and returns a your_file.xml which can be analyzed by TPP (Trans-Proteomic Pipeline).
runprobiddta.pl This is a script that batch processes all your .dta files in a directory.
You do need "mzxml2other" installed on your machine to start from your_file.mzXML. If you already have all .dta files in current directory, use runprobiddta.pl.