Constraints on addStream are currently ignored by Chrome. The interaction of GetUserMedia constraints and WebAudio-sourced MediaStreams in Chrome is currently somewhat counterintuitive, and still diverges from the W3C specification in some ways. I don't know if it's currently possible to disable AEC on WebAudio-sourced MediaStreams. If it is possible, it may require calling GetUserMedia with AEC disabled, and passing that stream to RTCPeerConnection, in order to set a global AEC-disabled flag.
In the long term we expect to have a more intuitive behavior in this area.