ENC: PNAS Early Edition for 15 Sep 2009

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Carlos Henrique de Freitas Burity

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Sep 17, 2009, 8:58:39 AM9/17/09

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Prof. Dr. Carlos Henrique de Freitas Burity

Coordenador dos Cursos de Ciências Biológicas &

Superior de Tecnologia em Gestão Ambiental - CSE

(21) 2672-7841; (21) 9308-4025.

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De: pnas-...@alerts.stanford.edu [mailto:pnas-...@alerts.stanford.edu]
Enviada em: quarta-feira, 16 de setembro de 2009 02:17
Para: Carlos Henrique de Freitas Burity
Assunto: PNAS Early Edition for 15 Sep 2009

PNAS Online Early Edition Contents Alert

The following articles are published online before print in PNAS Early Edition for 8 Sep 2009 to 15 Sep 2009.

EDITORIAL

PNAS will eliminate Communicated submissions in July 2010

Randy Schekman

LETTERS (Online Only)

Poor methodology for predicting large-scale tree die-off

Sebastian Leuzinger, Christof Bigler, Annett Wolf, and Christian Körner

Reply to Leuzinger et al.: Drought-induced tree mortality temperature sensitivity requires pressing forward with best available science

Henry D. Adams, Maite Guardiola-Claramonte, Greg A. Barron-Gafford, Juan Camilo Villegas, David D. Breshears, Chris B. Zou, Peter A. Troch, and Travis E. Huxman

Overlook agricultural research at our peril

Daniel R. Bush

COMMENTARIES

Finding needles in DNA stacks

Cynthia J. Burrows and Aaron M. Fleming

Cytokinin and WUSCHEL tie the knot around plant stem cells

Robert Sablowski

Trophoblast stem cells derived from nuclear transfer embryos: Phenotypically unique, bad neighbors, or poor communicators?

Michael J. Soares and Kazuo Asanoma

ABCs of erythroid mitochondrial iron uptake

Nancy C. Andrews

Stem cells and a cure for type 1 diabetes?

John A. Todd

Breadth-biased versus focused cognitive control in media multitasking behaviors

Lin Lin

Damage control in host–pathogen interactions

Ruslan Medzhitov

The trophic tapestry of the sea

Matthew J. Church

COLLOQUIUM

Biogeography, Changing Climates, and Niche Evolution Sackler Colloquium: Birds track their Grinnellian niche through a century of climate change

Morgan W. Tingley, William B. Monahan, Steven R. Beissinger, and Craig Moritz

Anthropology-Biological Sciences

Out of Africa: Modern Human Origins Special Feature: The origin of Neandertals

J. J. Hublin

Applied Biological Sciences

A quantitative model for age-dependent expression of the p16INK4a tumor suppressor

Denis Tsygankov, Yan Liu, Hanna K. Sanoff, Norman E. Sharpless, and Timothy C. Elston

Applied Physical Sciences

Fabrication of large binary colloidal crystals with a NaCl structure OPEN ACCESS ARTICLE

E. C. M. Vermolen, A. Kuijk, L. C. Filion, M. Hermes, J. H. J. Thijssen, M. Dijkstra, and A. van Blaaderen

Biochemistry

Reconstitution of phospholipid translocase activity with purified Drs2p, a type-IV P-type ATPase from budding yeast

Xiaoming Zhou and Todd R. Graham

GTP-induced conformational changes in septins and implications for function

Minhajuddin Sirajuddin, Marian Farkasovsky, Eldar Zent, and Alfred Wittinghofer

Repression of DNA-binding dependent glucocorticoid receptor-mediated gene expression OPEN ACCESS ARTICLE

Katy A. Muzikar, Nicholas G. Nickols, and Peter B. Dervan

Survey of large protein complexes in D. vulgaris reveals great structural diversity OPEN ACCESS ARTICLE

Bong-Gyoon Han, Ming Dong, Haichuan Liu, Lauren Camp, Jil Geller, Mary Singer, Terry C. Hazen, Megan Choi, H. Ewa Witkowska, David A. Ball, Dieter Typke, Kenneth H. Downing, Maxim Shatsky, Steven E. Brenner, John-Marc Chandonia, Mark D. Biggin, and Robert M. Glaeser

Structure of a tRNA-dependent kinase essential for selenocysteine decoding

Yuhei Araiso, R. Lynn Sherrer, Ryuichiro Ishitani, Joanne M. L. Ho, Dieter Söll, and Osamu Nureki

The cytochrome ba₃ oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping

Hsin-Yang Chang, James Hemp, Ying Chen, James A. Fee, and Robert B. Gennis

NO formation by a catalytically self-sufficient bacterial nitric oxide synthase from Sorangium cellulosum

Theodor Agapie, Sandy Suseno, Joshua J. Woodward, Stefan Stoll, R. David Britt, and Michael A. Marletta

Biogenesis of glutaminyl-mt tRNA^Gln in human mitochondria

Asuteka Nagao, Takeo Suzuki, Takayuki Katoh, Yuriko Sakaguchi, and Tsutomu Suzuki

Biophysics and Computational Biology

Order of lipid phases in model and plasma membranes

Hermann-Josef Kaiser, Daniel Lingwood, Ilya Levental, Julio L. Sampaio, Lucie Kalvodova, Lawrence Rajendran, and Kai Simons

Membrane structure and conformational changes of the antibiotic heterodimeric peptide distinctin by solid-state NMR spectroscopy

Jarbas M. Resende, Cléria Mendonça Moraes, Victor H. O. Munhoz, Christopher Aisenbrey, Rodrigo M. Verly, Philippe Bertani, Amary Cesar, Dorila Piló-Veloso, and Burkhard Bechinger

Crystal structure of the catalytic domain of the tumor-associated human carbonic anhydrase IX

Vincenzo Alterio, Mika Hilvo, Anna Di Fiore, Claudiu T. Supuran, Peiwen Pan, Seppo Parkkila, Andrea Scaloni, Jaromir Pastorek, Silvia Pastorekova, Carlo Pedone, Andrea Scozzafava, Simona Maria Monti, and Giuseppina De Simone

Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer OPEN ACCESS ARTICLE

Fang Huang, Liming Ying, and Alan R. Fersht

No facilitator required for membrane transport of hydrogen sulfide

John C. Mathai, Andreas Missner, Philipp Kügler, Sapar M. Saparov, Mark L. Zeidel, John K. Lee, and Peter Pohl

Short-distance probes for protein backbone structure based on energy transfer between bimane and transition metal ions OPEN ACCESS ARTICLE

Justin W. Taraska, Michael C. Puljung, and William N. Zagotta

Cell Biology

Sulforaphane destabilizes the androgen receptor in prostate cancer cells by inactivating histone deacetylase 6

Angela Gibbs, Jacob Schwartzman, Vivianne Deng, and Joshi Alumkal

Dual role of K_ATP channel C-terminal motif in membrane targeting and metabolic regulation

Crystal F. Kline, Harley T. Kurata, Thomas J. Hund, Shane R. Cunha, Olha M. Koval, Patrick J. Wright, Matthew Christensen, Mark E. Anderson, Colin G. Nichols, and Peter J. Mohler

Function of IRE1 alpha in the placenta is essential for placental development and embryonic viability

Takao Iwawaki, Ryoko Akai, Shinya Yamanaka, and Kenji Kohno

Highly tumorigenic lung cancer CD133⁺ cells display stem-like features and are spared by cisplatin treatment OPEN ACCESS ARTICLE

Giulia Bertolini, Luca Roz, Paola Perego, Monica Tortoreto, Enrico Fontanella, Laura Gatti, Graziella Pratesi, Alessandra Fabbri, Francesca Andriani, Stella Tinelli, Elena Roz, Roberto Caserini, Salvatore Lo Vullo, Tiziana Camerini, Luigi Mariani, Domenico Delia, Elisa Calabrò, Ugo Pastorino, and Gabriella Sozzi

Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability

Mahesh B. Chandrasekharan, Fu Huang, and Zu-Wen Sun

Functional interaction between native G protein-coupled purinergic receptors in Xenopus follicles OPEN ACCESS ARTICLE

Rogelio O. Arellano, Edith Garay, and Francisco Vázquez-Cuevas

Chemistry

Chemical dynamics of triacetylene formation and implications to the synthesis of polyynes in Titan's atmosphere

X. Gu, Y. S. Kim, R. I. Kaiser, A. M. Mebel, M. C. Liang, and Y. L. Yung

Spectroscopic evidence for an engineered, catalytically active Trp radical that creates the unique reactivity of lignin peroxidase

Andrew T. Smith, Wendy A. Doyle, Pierre Dorlet, and Anabella Ivancich

Profiling protein thiol oxidation in tumor cells using sulfenic acid-specific antibodies OPEN ACCESS ARTICLE

Young Ho Seo and Kate S. Carroll

Developmental Biology

Loss of Erk3 function in mice leads to intrauterine growth restriction, pulmonary immaturity, and neonatal lethality

Sonia Klinger, Benjamin Turgeon, Kim Lévesque, Geoffrey A. Wood, Kjersti M. Aagaard-Tillery, and Sylvain Meloche

A wound-induced Wnt expression program controls planarian regeneration polarity OPEN ACCESS ARTICLE

Christian P. Petersen and Peter W. Reddien

The tyrosine phosphatase Shp2 (PTPN11) directs Neuregulin-1/ErbB signaling throughout Schwann cell development OPEN ACCESS ARTICLE

Katja S. Grossmann, Hagen Wende, Florian E. Paul, Cyril Cheret, Alistair N. Garratt, Sandra Zurborg, Konstantin Feinberg, Daniel Besser, Herbert Schulz, Elior Peles, Matthias Selbach, Walter Birchmeier, and Carmen Birchmeier

β-Catenin promotes respiratory progenitor identity in mouse foregut OPEN ACCESS ARTICLE

Kelley S. Harris-Johnson, Eric T. Domyan, Chad M. Vezina, and Xin Sun

Economic Sciences

Neural responses to sanction threats in two-party economic exchange OPEN ACCESS ARTICLE

Jian Li, Erte Xiao, Daniel Houser, and P. Read Montague

Environmental Sciences-Physical Sciences

Long-term natural variability and 20th century climate change

Kyle L. Swanson, George Sugihara, and Anastasios A. Tsonis

Quantification of rapid environmental redox processes with quick-scanning x-ray absorption spectroscopy (Q-XAS) OPEN ACCESS ARTICLE

Matthew Ginder-Vogel, Gautier Landrot, Jason S. Fischel, and Donald L. Sparks

Evolution

Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes

Weilong Hao and Jeffrey D. Palmer

Fossil and molecular evidence constrain scenarios for the early evolutionary and biogeographic history of hystricognathous rodents

Hesham M. Sallam, Erik R. Seiffert, Michael E. Steiper, and Elwyn L. Simons

Chemoenzymatic elaboration of monosaccharides using engineered cytochrome P450_BM3 demethylases

Jared C. Lewis, Sabine Bastian, Clay S. Bennett, Yu Fu, Yuuichi Mitsuda, Mike M. Chen, William A. Greenberg, Chi-Huey Wong, and Frances H. Arnold

Plant and Insect Biodiversity Special Feature: Evidence for adaptive radiation from a phylogenetic study of plant defenses

Anurag A. Agrawal, Mark Fishbein, Rayko Halitschke, Amy P. Hastings, Daniel L. Rabosky, and Sergio Rasmann

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes

Dee R. Denver, Peter C. Dolan, Larry J. Wilhelm, Way Sung, J. Ignacio Lucas-Lledó, Dana K. Howe, Samantha C. Lewis, Kazu Okamoto, W. Kelley Thomas, Michael Lynch, and Charles F. Baer

A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution

Yosuke Okano, Naoki Aono, Yuji Hiwatashi, Takashi Murata, Tomoaki Nishiyama, Takaaki Ishikawa, Minoru Kubo, and Mitsuyasu Hasebe

Genetics

BG1 has a major role in MHC-linked resistance to malignant lymphoma in the chicken

Ronald M. Goto, Yujun Wang, Robert L. Taylor, Jr., Patricia S. Wakenell, Kazuyoshi Hosomichi, Takashi Shiina, Craig S. Blackmore, W. Elwood Briles, and Marcia M. Miller

Elucidating the genetic architecture of familial schizophrenia using rare copy number variant and linkage scans

Bin Xu, Abigail Woodroffe, Laura Rodriguez-Murillo, J. Louw Roos, Elizabeth J. van Rensburg, Gonçalo R. Abecasis, Joseph A. Gogos, and Maria Karayiorgou

Mediator complex association with constitutively transcribed genes in yeast

Suraiya A. Ansari, Qiye He, and Randall H. Morse

Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118 OPEN ACCESS ARTICLE

Maite Novo, Frédéric Bigey, Emmanuelle Beyne, Virginie Galeote, Frédérick Gavory, Sandrine Mallet, Brigitte Cambon, Jean-Luc Legras, Patrick Wincker, Serge Casaregola, and Sylvie Dequin

Immunology

The same systemic autoimmune disease provokes arthritis and endocarditis via distinct mechanisms

Bryce A. Binstadt, Jennifer L. Hebert, Adriana Ortiz-Lopez, Roderick Bronson, Christophe Benoist, and Diane Mathis

25-Hydroxycholesterol secreted by macrophages in response to Toll-like receptor activation suppresses immunoglobulin A production

David R. Bauman, Andrew D. Bitmansour, Jeffrey G. McDonald, Bonne M. Thompson, Guosheng Liang, and David W. Russell

Bioinformatics construction of the human cell surfaceome

J. P. C. da Cunha, P. A. F. Galante, J. E. de Souza, R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. N. Marie, W. A. Silva, Jr., R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, and S. J. de Souza

Gasp, a Grb2-associating protein, is critical for positive selection of thymocytes

Michael S. Patrick, Hiroyo Oda, Kunihiro Hayakawa, Yoshinori Sato, Koji Eshima, Teruo Kirikae, Shun-ichiro Iemura, Mutsunori Shirai, Takaya Abe, Tohru Natsume, Takehiko Sasazuki, and Harumi Suzuki

A human IL10 BAC transgene reveals tissue-specific control of IL-10 expression and alters disease outcome

Dilini Ranatunga, Christian M. Hedrich, Fengying Wang, Daniel W. McVicar, Nathan Nowak, Trupti Joshi, Lionel Feigenbaum, Lindsay R. Grant, Simona Stäger, and Jay H. Bream

Medical Sciences

Identification of human zonulin, a physiological modulator of tight junctions, as prehaptoglobin-2 OPEN ACCESS ARTICLE

Amit Tripathi, Karen M. Lammers, Simeon Goldblum, Terez Shea-Donohue, Sarah Netzel-Arnett, Marguerite S. Buzza, Toni M. Antalis, Stefanie N. Vogel, Aiping Zhao, Shiqi Yang, Marie-Claire Arrietta, Jon B. Meddings, and Alessio Fasano

Regulation of proto-oncogene transcription, cell proliferation, and tumorigenesis in mice by PSF protein and a VL30 noncoding RNA

Gang Wang, Ying Cui, Guangfeng Zhang, Alan Garen, and Xu Song

Chromatin protein HMGB2 regulates articular cartilage surface maintenance via β-catenin pathway

Noboru Taniguchi, Beatriz Caramés, Yasuhiko Kawakami, Brad A. Amendt, Setsuro Komiya, and Martin Lotz

Reduction of phosphoinositide-phospholipase C beta1 methylation predicts the responsiveness to azacitidine in high-risk MDS OPEN ACCESS ARTICLE

Matilde Y. Follo, Carlo Finelli, Sara Mongiorgi, Cristina Clissa, Costanza Bosi, Nicoletta Testoni, Francesca Chiarini, Giulia Ramazzotti, Michele Baccarani, Alberto M. Martelli, Lucia Manzoli, Giovanni Martinelli, and Lucio Cocco

Microbiology

Human papillomavirus 16 E7 inactivator of retinoblastoma family proteins complements human cytomegalovirus lacking UL97 protein kinase

Jeremy P. Kamil, Adam J. Hume, Igor Jurak, Karl Münger, Robert F. Kalejta, and Donald M. Coen

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria OPEN ACCESS ARTICLE

Nathanaël Delmotte, Claudia Knief, Samuel Chaffron, Gerd Innerebner, Bernd Roschitzki, Ralph Schlapbach, Christian von Mering, and Julia A. Vorholt

Opportunistic pathogens enriched in showerhead biofilms

Leah M. Feazel, Laura K. Baumgartner, Kristen L. Peterson, Daniel N. Frank, J. Kirk Harris, and Norman R. Pace

Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells

Maria Valencia-Burton, Ankita Shah, Jason Sutin, Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, and Natalia E. Broude

Subcellular localization of a bacterial regulatory RNA

Jay H. Russell and Kenneth C. Keiler

Neuroscience

Interareal coordination of columnar architectures during visual cortical development

Matthias Kaschube, Michael Schnabel, Fred Wolf, and Siegrid Löwel

Segregating the significant from the mundane on a moment-to-moment basis via direct and indirect amygdala contributions

Seung-Lark Lim, Srikanth Padmala, and Luiz Pessoa

Modulation of neuronal responses during covert search for visual feature conjunctions

Giedrius T. Buracas and Thomas D. Albright

Loss of dendrite stabilization by the Abl-related gene (Arg) kinase regulates behavioral flexibility and sensitivity to cocaine OPEN ACCESS ARTICLE

Shannon L. Gourley, Anthony J. Koleske, and Jane R. Taylor

Experience-dependent maturation of the glomerular microcircuit

Brady J. Maher, Matthew J. McGinley, and Gary L. Westbrook

Inhibition of protein kinase C signaling protects prefrontal cortex dendritic spines and cognition from the effects of chronic stress OPEN ACCESS ARTICLE

Avis Brennan Hains, Mai Anh T. Vu, Paul K. Maciejewski, Christopher H. van Dyck, Melissa Gottron, and Amy F. T. Arnsten

DeltaNp73 regulates neuronal survival in vivo

Fadel Tissir, Aurélia Ravni, Younès Achouri, Dieter Riethmacher, Gundela Meyer, and Andre M. Goffinet

Predictable irregularities in retinal receptive fields OPEN ACCESS ARTICLE

Yuan Sophie Liu, Charles F. Stevens, and Tatyana O. Sharpee

Intrahippocampal injection of a lentiviral vector expressing Nrf2 improves spatial learning in a mouse model of Alzheimer's disease

Katja Kanninen, Riikka Heikkinen, Tarja Malm, Taisia Rolova, Susanna Kuhmonen, Hanna Leinonen, Seppo Ylä-Herttuala, Heikki Tanila, Anna-Liisa Levonen, Milla Koistinaho, and Jari Koistinaho

S-nitrosylation of stargazin regulates surface expression of AMPA-glutamate neurotransmitter receptors

Balakrishnan Selvakumar, Richard L. Huganir, and Solomon H. Snyder

Diminished dosage of 22q11 genes disrupts neurogenesis and cortical development in a mouse model of 22q11 deletion/DiGeorge syndrome

Daniel W. Meechan, Eric S. Tucker, Thomas M. Maynard, and Anthony-Samuel LaMantia

Dendritic trafficking of BDNF mRNA is mediated by translin and blocked by the G196A (Val66Met) mutation

C. Chiaruttini, A. Vicario, Z. Li, G. Baj, P. Braiuca, Y. Wu, F. S. Lee, L. Gardossi, J. M. Baraban, and E. Tongiorgi

Myosin II is required for interkinetic nuclear migration of neural progenitors

Judith Schenk, Michaela Wilsch-Bräuninger, Federico Calegari, and Wieland B. Huttner

Intrinsic, nondeterministic circadian rhythm generation in identified mammalian neurons

Alexis B. Webb, Nikhil Angelo, James E. Huettner, and Erik D. Herzog

Physics

Strong-field control and spectroscopy of attosecond electron-hole dynamics in molecules

Olga Smirnova, Serguei Patchkovskii, Yann Mairesse, Nirit Dudovich, and Misha Yu Ivanov

Physiology

Reversal of long-term dendritic spine alterations in Alzheimer disease models OPEN ACCESS ARTICLE

Donna L. Smith, Julio Pozueta, Bing Gong, Ottavio Arancio, and Michael Shelanski

Molecular clock is involved in predictive circadian adjustment of renal function

Annie Mercier Zuber, Gabriel Centeno, Sylvain Pradervand, Svetlana Nikolaeva, Lionel Maquelin, Léonard Cardinaux, Olivier Bonny, and Dmitri Firsov

Plant Biology

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

Reetika Rawat, Jacob Schwartz, Matthew A. Jones, Ilkka Sairanen, Youfa Cheng, Carol R. Andersson, Yunde Zhao, Karin Ljung, and Stacey L. Harmer

Social Sciences

PKNOX2 gene is significantly associated with substance dependence in European-origin women

Xiang Chen, Kelly Cho, Burton H. Singer, and Heping Zhang

Retractions

Retraction for Chen et al., PKNOX2 gene is significantly associated with substance dependence in European-origin women

Xiang Chen, Kelly Cho, Burton H. Singer, and Heping Zhang

PKNOX2 gene is significantly associated with substance dependence in European-origin women

Xiang Chen, Kelly Cho, Burton H. Singer, and Heping Zhang

Corrections

Correction for Raff et al., Chlorine activation indoors and outdoors via surface-mediated reactions of nitrogen oxides with hydrogen chloride

Correction for Desplats et al., Inclusion formation and neuronal cell death through neuron-to-neuron transmission of ${alpha}$ -synuclein

Correction for LeSauter et al., Stomach ghrelin-secreting cells as food-entrainable circadian clocks

Correction for Sehnal et al., An organometallic route to long helicenes

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