Hey Manuel,
This is a very interesting question and so far I haven't found a very convincing answer, which may be because DTI reflects changes in white matter (WM) indirectly.
From my experience, FA is an overall assessment of white matter (WM) tract integrity, ranging from normalized values 0 (very isotropic, no direction dependent) to 1 (very anisotropic, or very directional dependent). In relation with WM, it could mean that higher FA is related to higher axon density, better myelination, etc.
MD, which is mean diffusivity is the average value of three (let's say x-y-z) directions of diffusion. It is more difficult to interpret this measurement but generally the higher the number, the more diffuse the tract will be, which can tell you similar information as lower FA values. I like to use radial diffusivity measures (RD), which is more related to a transverse direction of diffusion and could be more related to axonal diameter or myelination/demyelination.
I hope this helps, and I would like to know what other researchers think as well :). For more information I would recommend you to read this:
Beaulieu, C. (2002). "The basis of anisotropic water diffusion in the nervous system - a technical review." NMR Biomed 15(7-8): 435-455.
Rodrigo
Rodrigo D. Perea
Graduate Research Assistant
Bioengineering Program
The University of Kansas