Hi Milinda,
The Fd-3m space group has 2 variants with a different choice of
origin. By default, PDFgui is using representation where the
multiplicity of [0,0,0] is 8. As far as I remember the origin of the
second representation is offset by [1/8, 1/8, 1/8], so you need to set
the space group offset in the "Expand space group" dialog to either
[0.125, 0.125, 0.125] or [-0.125, -0.125, -0.125]. Please, check the
offset in the International Tables, which should have all variants of Fd-3m,
and also make sure that the positions get expanded as expected.
Good luck,
Pavol