[dicompyler-plugins] push by landon.d...@gmail.com - Removed unnecessary commented items from Analysis.py. Changed "Plan v... on 2013-01-24 02:56 GMT
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Jan 23, 2013, 9:57:22 PM1/23/13
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Revision: 7e7ac03cc50e
Branch: default
Author: land...@Landon-desktop.cable.rcn.com
Date: Wed Jan 23 18:55:27 2013
Log: Removed unnecessary commented items from Analysis.py.
Changed "Plan value (Gy)"
in parallel tissue section of Analysis.xrc to "Plan value (cc)".
http://code.google.com/p/dicompyler-plugins/source/detail?r=7e7ac03cc50e
Modified:
/plugins/SRSDVHAnalysis/Analysis.py
/plugins/SRSDVHAnalysis/Analysis.xrc
=======================================
--- /plugins/SRSDVHAnalysis/Analysis.py Fri Aug 24 13:47:45 2012
+++ /plugins/SRSDVHAnalysis/Analysis.py Wed Jan 23 18:55:27 2013
@@ -1,20 +1,14 @@
#!/usr/bin/env python
# -*- coding: ISO-8859-1 -*-
# Analysis.py
-"""dicompyler plugin that calculates congruence between selected structure
and an isodose line."""
+"""Dicompyler plugin that determines whether a plan meets or fails the
+ constraints of the TG-101 report."""
import os.path
import wx
from wx.xrc import XmlResource, XRCCTRL, XRCID
from wx.lib.pubsub import Publisher as pub
-#from matplotlib import _cntr as cntr
-#from matplotlib import __version__ as mplversion
-#import matplotlib.nxutils as nx
-#import numpy.ma as ma
-#import numpy as np
-#from dicompyler import guiutil, util
from dicompyler import dvhdata
-#from dicompyler.dicomparser import DicomParser as dp
def pluginProperties():
"""Properties of the plugin."""
@@ -28,7 +22,6 @@
props['plugin_version'] = 1
props['min_dicom'] = ['rtss', 'rtdose']
props['recommended_dicom'] = ['rtss', 'rtdose', 'rtss', 'images']
-
return props
class plugin:
@@ -56,11 +49,7 @@
panelAnalysis = self.res.LoadDialog(self.parent, "AnalysisPanel")
panelAnalysis.SetTitle("TG-101 Stereotactic Plan Analysis")
panelAnalysis.Init(self.data['structures'], self.data['dvhs'])
- panelAnalysis.ShowModal()
-
- # Set up pubsub
- #pub.subscribe(self.OnUpdatePatient, 'patient.updated.parsed_data')
-
+ panelAnalysis.ShowModal()
return panelAnalysis
def OnDestroy(self, evt):
@@ -139,7 +128,7 @@
'choiceCochlea': ['cochlea'],
'choiceBrainstem': ['brainstem'],
'choiceSpinal': ['spinal
cord', 'cord'],
- 'choiceCauda': ['cauda', 'caude
equina'],
+ 'choiceCauda': ['cauda', 'cauda
equina'],
'choiceEsophagus': ['esophagus'],
'choiceBrachial': ['brachial
plexus'],
'choiceHeart': ['heart'],
@@ -210,21 +199,39 @@
# Doses defined per fraction/Organ (Critical Volume/Threshold
organs)
# NOTE: Lungs, Liver, and RenalCortex are actually THRESHOLDS (in
Gy),
# NOT volumes. This was only done for a simpler for_loop.
- # See columns on GUI.
- for i, organName in self.volDict.iteritems(): #
Look up GUI Column 2 values
+ # See columns on GUI.
+
+ # Look up GUI Column 2 values
+ for i, organName in self.volDict.iteritems():
volName = 'vol' + organName
setattr(self, volName, XRCCTRL(self, volName))
- # Define structure lists (choices) and dose limits (in cGy) for
each organ/fractionation
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- setattr(self, choiceName, XRCCTRL(self, choiceName)) #
structure lists (choices) i.e. self.choiceOptic
+ # Define structure lists (choices) and dose limits (in cGy) for
organ
+ for choiceName, organList in self.widgetDict.iteritems():
+ #i.e. self.choiceOptic (combobox)
+ setattr(self, choiceName, XRCCTRL(self, choiceName))
for organName in organList:
- limitName = 'limit' + organName #
TG limit values i.e. 'limitOptic'
- planName = 'plan' + organName #
Dose values obtained from plan in Dicompyler i.e. 'planOptic'
- imgName = 'img' + organName #Image box
indicator that initializes with a transparent.png image i.e. 'imgOptic'
- setattr(self, limitName, XRCCTRL(self, limitName)) #
i.e. self.limitOptic
- setattr(self, planName, XRCCTRL(self, planName)) #
i.e. self.planOptic
- setattr(self, imgName, XRCCTRL(self, imgName)) #
i.e. self.imgOptic
+ limitName = 'limit' + organName # TG limit values
+ planName = 'plan' + organName # Dose values obtained
from plan
+ imgName = 'img' + organName #Image box indicator
+ # i.e. self.limitOptic
+ setattr(self, limitName, XRCCTRL(self, limitName))
+ # i.e. self.planOptic
+ setattr(self, planName, XRCCTRL(self, planName))
+ # i.e. self.imgOptic
+ setattr(self, imgName, XRCCTRL(self, imgName))
+
+ img = os.path.join(os.path.dirname(__file__), 'transparent.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgTransparent = wx.BitmapFromImage(img)
+
+ img = os.path.join(os.path.dirname(__file__), 'check.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgCheck = wx.BitmapFromImage(img)
+
+ img = os.path.join(os.path.dirname(__file__), 'flag.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgFlag = wx.BitmapFromImage(img)
# Bind ui events to the proper methods
wx.EVT_COMBOBOX(self, XRCID('choiceFractions'),
self.ReadTolerances)
@@ -248,7 +255,6 @@
wx.EVT_COMBOBOX(self, XRCID('choiceLungs'), self.OnComboOrgan)
wx.EVT_COMBOBOX(self, XRCID('choiceLiver'), self.OnComboOrgan)
wx.EVT_COMBOBOX(self, XRCID('choiceRenalCortex'),
self.OnComboOrgan)
- #self.Bind(wx.EVT_WINDOW_DESTROY, self.OnDestroy)
self.SetStructureChoices()
self.InitialGuessCombobox()
@@ -273,24 +279,29 @@
else:
self.EnableChoices()
self.ResetImgs()
- for i, organName in
self.volDict.iteritems(): # Look up GUI Column 2 values
- if hasattr(self, 'vol' + organName) ==
True: # exclude max points in column 2
+ # Look up GUI Column 2 values
+ for i, organName in self.volDict.iteritems():
+ # exclude max points in column 2
+ if hasattr(self, 'vol' + organName) == True:
VolObject = getattr(self, 'vol' + organName)
tolerance = getattr(self, 'tolerance' + organName)
- if type(tolerance[0]) != str: #
All except hilum and parallel organs
+ # All except hilum and parallel organs
+ if type(tolerance[0]) != str:
VolObject.SetValue(str(tolerance[0]))
- if type(tolerance[0]) == str: #
hilum and lungs
- if '%' in tolerance[0]: #
hilum
- s =
tolerance[0] # i.e. '66.6%' ->
0.666
- setattr(self, 'ratio' + organName,
float(s.rstrip('%')) / 100) # i.e. self.ratioRenalHilum
- setattr(self, 'percentage' + organName, s) #
i.e. self.percentageRenalHilum
- VolObject.SetValue(s) #
i.e. self.volRenalHilum
- if '>' in tolerance[0]: # lungs
- VolObject.SetValue(str(tolerance[FractionID]))
- for choiceName, organList in
self.widgetDict.iteritems(): # Look up GUI Column 3 values
- for organName in
organList: # i.e. 'Optic, OpticMax'
- tolerance = getattr(self, 'tolerance' +
organName) # i.e. 'self.toleranceOptic'
- LimitObject = getattr(self, 'limit' +
organName) # i.e. self.limitOptic
+ if type(tolerance[0]) == str: # hilum and lungs
+ if '%' in tolerance[0]: # hilum
+ s = tolerance[0] # i.e. '66.6%' ->
0.666
+ setattr(self, 'ratio' + organName,
+ float(s.rstrip('%')) / 100)
+ setattr(self, 'percentage' + organName, s)
+ VolObject.SetValue(s)
+ if '>' in tolerance[0]: # lungs
+ VolObject.SetValue(str(tolerance[FractionID]))
+ # Look up GUI Column 3 values
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ tolerance = getattr(self, 'tolerance' + organName)
+ LimitObject = getattr(self, 'limit' + organName)
if type(tolerance[0]) != str:
LimitObject.SetValue(str(tolerance[FractionID]))
if type(tolerance[0]) == str:
@@ -300,30 +311,33 @@
LimitObject.SetValue(tolerance[0])
# Autopopulate the preset structures, if found by name
- for choiceName, organList in
self.widgetDict.iteritems(): # i.e. ['Optic', 'OpticMax']
- ChoiceObject = getattr(self,
choiceName) # i.e. self.choiceOptic
+ for choiceName, organList in self.widgetDict.iteritems():
+ ChoiceObject = getattr(self, choiceName)
CurrentChoiceObject = ChoiceObject.GetCurrentSelection()
- if CurrentChoiceObject >
0: # ignore choice(0) = ''
- for organName in
organList: # i.e. 'Optic'
+ if CurrentChoiceObject > 0: # ignore
choice(0) = ''
+ for organName in organList:
self.FindOrganPlan(ChoiceObject.GetClientData(CurrentChoiceObject),
organName)
def SetStructureChoices(self):
- """Populate the structure list."""
- # Reinitialize the lists; will have double the entries if not
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Clear() # i.e.
self.choiceOptic.Enable()
+ """Reinitialize the lists; will have double the entries if not."""
+
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Clear()
choiceObject.Append('') # Pad the first
item
for id, structure in self.structures.iteritems():
i = choiceObject.Append(structure['name'])
choiceObject.SetClientData(i, id)
def InitialGuessCombobox(self):
- for choiceName, guessList in
self.initialGuessDict.iteritems(): # i.e.
['skin', 'skin (0.5cm)']
- ChoiceObject = getattr(self,
choiceName) # i.e. self.choiceSkin
- for i in
range(ChoiceObject.GetCount()): #
combobox list ['', 'Optic', 'Skin', ...]
- if self.KeywordsInCombobox(ChoiceObject.GetString(i),
guessList) == True:
+ # i.e. ['skin', 'skin (0.5cm)']
+ for choiceName, guessList in self.initialGuessDict.iteritems():
+ ChoiceObject = getattr(self, choiceName)
+ # combobox list ['', 'Optic', 'Skin', ...]
+ for i in range(ChoiceObject.GetCount()):
+ if self.KeywordsInCombobox(ChoiceObject.GetString(i),
+ guessList) == True:
ChoiceObject.SetSelection(i)
def KeywordsInCombobox(self, comboboxString, guessList):
@@ -335,81 +349,73 @@
# NOTE: Lungs, Liver, and RenalCortex are actually THRESHOLDS (in
Gy),
# NOT volumes. This was only done for a simpler for_loop.
# See columns on GUI.
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- if hasattr(self, 'vol' + organName) == True: #
exclude statictext = max point
- VolObject = getattr(self, 'vol' + organName) # i.e.
self.volOptic
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ if hasattr(self, 'vol' + organName) == True:
+ VolObject = getattr(self, 'vol' + organName)
VolObject.Clear()
- def ResetLimitValues(self): # not
event based; do for all in dict
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- LimitObject = getattr(self, 'limit' + organName) # i.e.
self.limitOptic
+ def ResetLimitValues(self):
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ LimitObject = getattr(self, 'limit' + organName)
LimitObject.Clear()
- def ResetPlanValues(self): # not
event based; do for all in dict
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
+ def ResetPlanValues(self):
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ PlanObject = getattr(self, 'plan' + organName)
PlanObject.Clear()
def ResetImgs(self):
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.imgOptic
- ImgObject.SetBitmap(self.GetBitmap('transparent.png'))
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ ImgObject = getattr(self, 'img' + organName)
+ ImgObject.SetBitmap(self.imgTransparent)
def EnableChoices(self):
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Enable() # i.e.
self.choiceOptic.Enable()
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Enable()
def DisableChoices(self):
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Enable(False) # i.e.
self.choiceOptic.Enable(False)
-
- def GetBitmap(self, string):
- img = os.path.join(os.path.dirname(__file__), string)
- img = wx.Image(img, wx.BITMAP_TYPE_ANY)
- img = wx.BitmapFromImage(img)
- return img
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Enable(False)
- def OnComboOrgan(self,
event=None): # event based; do for only
on combobox organ
- choiceItem =
event.GetInt() # i.e. userinput
----> index of selected organ
- choiceName =
event.GetEventObject().GetName() # i.e. choiceObject
(name of organ label)
- choiceObject = getattr(self,
choiceName) # i.e. choiceObject =
self.choiceOptic
- id =
choiceObject.GetClientData(choiceItem) # i.e. id =
self.choiceOptic.GetClientData(choiceItem)
- for organName in
self.widgetDict[choiceName]: # i.e.
['Optic', 'OpticMax']
- if id > 0: #
exclude choice(0) = ''
- #FindPlanObject = getattr(self, 'FindPlan' +
organName) # i.e. self.FindPlanOptic
- #FindPlanObject(id)
+ def OnComboOrgan(self, event=None): # event based
+ choiceItem = event.GetInt() # i.e. userinput->
index
+ choiceName = event.GetEventObject().GetName() # i.e. choiceObject
+ choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
+ id = choiceObject.GetClientData(choiceItem)
+ for organName in self.widgetDict[choiceName]:
+ if id > 0: # exclude
choice(0) = ''
self.FindOrganPlan(id, organName)
else:
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.planOptic
+ PlanObject = getattr(self, 'plan' + organName)
+ ImgObject = getattr(self, 'img' + organName)
PlanObject.Clear()
- ImgObject.SetBitmap(self.GetBitmap('transparent.png'))
+ ImgObject.SetBitmap(self.imgTransparent)
def FindOrganPlan(self, id, organName):
- LimitObject = getattr(self, 'limit' + organName) # i.e.
self.planOptic
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.planOptic
+ LimitObject = getattr(self, 'limit' + organName)
+ PlanObject = getattr(self, 'plan' + organName)
+ ImgObject = getattr(self, 'img' + organName)
self.dvhdata[id] = dvhdata.DVH(self.dvhs[id])
- if hasattr(self, 'vol' + organName) == True: # exclude
statictext = max point
- VolObject = getattr(self, 'vol' + organName) # i.e.
self.volOptic
+ total_vol = dvhdata.CalculateVolume(self.structures[id])
+ if hasattr(self, 'vol' + organName) == True: # exclude
statictext
+ VolObject = getattr(self, 'vol' + organName)
if '%' in VolObject.GetValue(): #hilum
s = VolObject.GetValue()
s = s.rstrip('%')
formatted_vol = s
- if '> ' in LimitObject.GetValue(): #hilum and lung
+ if '> ' in LimitObject.GetValue(): #hilum and lung
s = LimitObject.GetValue()
s = s.lstrip('> ')
formatted_limit = s
- if 'Max' not in organName:
- total_vol = dvhdata.CalculateVolume(self.structures[id])
+ if 'Max' not in organName:
if 'formatted_vol' in locals():
Vol = float(formatted_vol)*100/total_vol
else:
@@ -421,21 +427,23 @@
crit_vol = str(round(crit_vol,1))
PlanObject.SetValue(crit_vol)
if float(PlanObject.GetValue()) > float(formatted_limit):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
else:
PlanObject.SetValue(dose)
if float(PlanObject.GetValue()) <
float(LimitObject.GetValue()):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
- else: # dose max
- dose = self.dvhdata[id].GetDoseConstraint(0) #dose at DVH tail
+ else: # dose max
+ voxelPointVol = 0.035 * 100/total_vol # 0.035 cc
is "voxel"
+ dose = self.dvhdata[id].GetDoseConstraint(voxelPointVol) #dose
at DVH tail
dose = str(dose/100)
PlanObject.SetValue(dose)
if float(PlanObject.GetValue()) <
float(LimitObject.GetValue()):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
+
=======================================
--- /plugins/SRSDVHAnalysis/Analysis.xrc Fri Aug 24 13:47:45 2012
+++ /plugins/SRSDVHAnalysis/Analysis.xrc Wed Jan 23 18:55:27 2013
@@ -1,10 +1,12 @@
<?xml version="1.0" encoding="ISO-8859-1"?>
-<!-- generated by wxGlade 0.6.5 on Fri Aug 24 13:10:20 2012 -->
+<!-- generated by wxGlade 0.6.5 on Fri Sep 07 14:45:22 2012 -->
<resource version="2.3.0.1">
+ <object class="wxToolBar" name="toolbar1">
+ </object>
<object class="wxDialog" name="AnalysisPanel"
subclass="SRSDVHAnalysis.Analysis.AnalysisPanel">
<style>wxDEFAULT_DIALOG_STYLE|wxMINIMIZE_BOX|
wxDIALOG_NO_PARENT</style>
- <size>600, 978</size>
+ <size>600, 1009</size>
<object class="wxBoxSizer">
<orient>wxVERTICAL</orient>
<object class="sizeritem">
@@ -1419,7 +1421,7 @@
<flag>wxALIGN_CENTER_HORIZONTAL|
wxALIGN_CENTER_VERTICAL</flag>
<object class="wxStaticText"
name="label_39_copy_copy_copy">
<tooltip>Find this value by
taking organ volume and subtracting volume that received threshold
dose.</tooltip>
- <label>Plan value (Gy)</label>
+ <label>Plan value (cc)</label>
<font>
<style>normal</style>
<family>default</family>
Branch: default
Author: land...@Landon-desktop.cable.rcn.com
Date: Wed Jan 23 18:55:27 2013
Log: Removed unnecessary commented items from Analysis.py.
Changed "Plan value (Gy)"
in parallel tissue section of Analysis.xrc to "Plan value (cc)".
http://code.google.com/p/dicompyler-plugins/source/detail?r=7e7ac03cc50e
Modified:
/plugins/SRSDVHAnalysis/Analysis.py
/plugins/SRSDVHAnalysis/Analysis.xrc
=======================================
--- /plugins/SRSDVHAnalysis/Analysis.py Fri Aug 24 13:47:45 2012
+++ /plugins/SRSDVHAnalysis/Analysis.py Wed Jan 23 18:55:27 2013
@@ -1,20 +1,14 @@
#!/usr/bin/env python
# -*- coding: ISO-8859-1 -*-
# Analysis.py
-"""dicompyler plugin that calculates congruence between selected structure
and an isodose line."""
+"""Dicompyler plugin that determines whether a plan meets or fails the
+ constraints of the TG-101 report."""
import os.path
import wx
from wx.xrc import XmlResource, XRCCTRL, XRCID
from wx.lib.pubsub import Publisher as pub
-#from matplotlib import _cntr as cntr
-#from matplotlib import __version__ as mplversion
-#import matplotlib.nxutils as nx
-#import numpy.ma as ma
-#import numpy as np
-#from dicompyler import guiutil, util
from dicompyler import dvhdata
-#from dicompyler.dicomparser import DicomParser as dp
def pluginProperties():
"""Properties of the plugin."""
@@ -28,7 +22,6 @@
props['plugin_version'] = 1
props['min_dicom'] = ['rtss', 'rtdose']
props['recommended_dicom'] = ['rtss', 'rtdose', 'rtss', 'images']
-
return props
class plugin:
@@ -56,11 +49,7 @@
panelAnalysis = self.res.LoadDialog(self.parent, "AnalysisPanel")
panelAnalysis.SetTitle("TG-101 Stereotactic Plan Analysis")
panelAnalysis.Init(self.data['structures'], self.data['dvhs'])
- panelAnalysis.ShowModal()
-
- # Set up pubsub
- #pub.subscribe(self.OnUpdatePatient, 'patient.updated.parsed_data')
-
+ panelAnalysis.ShowModal()
return panelAnalysis
def OnDestroy(self, evt):
@@ -139,7 +128,7 @@
'choiceCochlea': ['cochlea'],
'choiceBrainstem': ['brainstem'],
'choiceSpinal': ['spinal
cord', 'cord'],
- 'choiceCauda': ['cauda', 'caude
equina'],
+ 'choiceCauda': ['cauda', 'cauda
equina'],
'choiceEsophagus': ['esophagus'],
'choiceBrachial': ['brachial
plexus'],
'choiceHeart': ['heart'],
@@ -210,21 +199,39 @@
# Doses defined per fraction/Organ (Critical Volume/Threshold
organs)
# NOTE: Lungs, Liver, and RenalCortex are actually THRESHOLDS (in
Gy),
# NOT volumes. This was only done for a simpler for_loop.
- # See columns on GUI.
- for i, organName in self.volDict.iteritems(): #
Look up GUI Column 2 values
+ # See columns on GUI.
+
+ # Look up GUI Column 2 values
+ for i, organName in self.volDict.iteritems():
volName = 'vol' + organName
setattr(self, volName, XRCCTRL(self, volName))
- # Define structure lists (choices) and dose limits (in cGy) for
each organ/fractionation
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- setattr(self, choiceName, XRCCTRL(self, choiceName)) #
structure lists (choices) i.e. self.choiceOptic
+ # Define structure lists (choices) and dose limits (in cGy) for
organ
+ for choiceName, organList in self.widgetDict.iteritems():
+ #i.e. self.choiceOptic (combobox)
+ setattr(self, choiceName, XRCCTRL(self, choiceName))
for organName in organList:
- limitName = 'limit' + organName #
TG limit values i.e. 'limitOptic'
- planName = 'plan' + organName #
Dose values obtained from plan in Dicompyler i.e. 'planOptic'
- imgName = 'img' + organName #Image box
indicator that initializes with a transparent.png image i.e. 'imgOptic'
- setattr(self, limitName, XRCCTRL(self, limitName)) #
i.e. self.limitOptic
- setattr(self, planName, XRCCTRL(self, planName)) #
i.e. self.planOptic
- setattr(self, imgName, XRCCTRL(self, imgName)) #
i.e. self.imgOptic
+ limitName = 'limit' + organName # TG limit values
+ planName = 'plan' + organName # Dose values obtained
from plan
+ imgName = 'img' + organName #Image box indicator
+ # i.e. self.limitOptic
+ setattr(self, limitName, XRCCTRL(self, limitName))
+ # i.e. self.planOptic
+ setattr(self, planName, XRCCTRL(self, planName))
+ # i.e. self.imgOptic
+ setattr(self, imgName, XRCCTRL(self, imgName))
+
+ img = os.path.join(os.path.dirname(__file__), 'transparent.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgTransparent = wx.BitmapFromImage(img)
+
+ img = os.path.join(os.path.dirname(__file__), 'check.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgCheck = wx.BitmapFromImage(img)
+
+ img = os.path.join(os.path.dirname(__file__), 'flag.png')
+ img = wx.Image(img, wx.BITMAP_TYPE_ANY)
+ self.imgFlag = wx.BitmapFromImage(img)
# Bind ui events to the proper methods
wx.EVT_COMBOBOX(self, XRCID('choiceFractions'),
self.ReadTolerances)
@@ -248,7 +255,6 @@
wx.EVT_COMBOBOX(self, XRCID('choiceLungs'), self.OnComboOrgan)
wx.EVT_COMBOBOX(self, XRCID('choiceLiver'), self.OnComboOrgan)
wx.EVT_COMBOBOX(self, XRCID('choiceRenalCortex'),
self.OnComboOrgan)
- #self.Bind(wx.EVT_WINDOW_DESTROY, self.OnDestroy)
self.SetStructureChoices()
self.InitialGuessCombobox()
@@ -273,24 +279,29 @@
else:
self.EnableChoices()
self.ResetImgs()
- for i, organName in
self.volDict.iteritems(): # Look up GUI Column 2 values
- if hasattr(self, 'vol' + organName) ==
True: # exclude max points in column 2
+ # Look up GUI Column 2 values
+ for i, organName in self.volDict.iteritems():
+ # exclude max points in column 2
+ if hasattr(self, 'vol' + organName) == True:
VolObject = getattr(self, 'vol' + organName)
tolerance = getattr(self, 'tolerance' + organName)
- if type(tolerance[0]) != str: #
All except hilum and parallel organs
+ # All except hilum and parallel organs
+ if type(tolerance[0]) != str:
VolObject.SetValue(str(tolerance[0]))
- if type(tolerance[0]) == str: #
hilum and lungs
- if '%' in tolerance[0]: #
hilum
- s =
tolerance[0] # i.e. '66.6%' ->
0.666
- setattr(self, 'ratio' + organName,
float(s.rstrip('%')) / 100) # i.e. self.ratioRenalHilum
- setattr(self, 'percentage' + organName, s) #
i.e. self.percentageRenalHilum
- VolObject.SetValue(s) #
i.e. self.volRenalHilum
- if '>' in tolerance[0]: # lungs
- VolObject.SetValue(str(tolerance[FractionID]))
- for choiceName, organList in
self.widgetDict.iteritems(): # Look up GUI Column 3 values
- for organName in
organList: # i.e. 'Optic, OpticMax'
- tolerance = getattr(self, 'tolerance' +
organName) # i.e. 'self.toleranceOptic'
- LimitObject = getattr(self, 'limit' +
organName) # i.e. self.limitOptic
+ if type(tolerance[0]) == str: # hilum and lungs
+ if '%' in tolerance[0]: # hilum
+ s = tolerance[0] # i.e. '66.6%' ->
0.666
+ setattr(self, 'ratio' + organName,
+ float(s.rstrip('%')) / 100)
+ setattr(self, 'percentage' + organName, s)
+ VolObject.SetValue(s)
+ if '>' in tolerance[0]: # lungs
+ VolObject.SetValue(str(tolerance[FractionID]))
+ # Look up GUI Column 3 values
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ tolerance = getattr(self, 'tolerance' + organName)
+ LimitObject = getattr(self, 'limit' + organName)
if type(tolerance[0]) != str:
LimitObject.SetValue(str(tolerance[FractionID]))
if type(tolerance[0]) == str:
@@ -300,30 +311,33 @@
LimitObject.SetValue(tolerance[0])
# Autopopulate the preset structures, if found by name
- for choiceName, organList in
self.widgetDict.iteritems(): # i.e. ['Optic', 'OpticMax']
- ChoiceObject = getattr(self,
choiceName) # i.e. self.choiceOptic
+ for choiceName, organList in self.widgetDict.iteritems():
+ ChoiceObject = getattr(self, choiceName)
CurrentChoiceObject = ChoiceObject.GetCurrentSelection()
- if CurrentChoiceObject >
0: # ignore choice(0) = ''
- for organName in
organList: # i.e. 'Optic'
+ if CurrentChoiceObject > 0: # ignore
choice(0) = ''
+ for organName in organList:
self.FindOrganPlan(ChoiceObject.GetClientData(CurrentChoiceObject),
organName)
def SetStructureChoices(self):
- """Populate the structure list."""
- # Reinitialize the lists; will have double the entries if not
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Clear() # i.e.
self.choiceOptic.Enable()
+ """Reinitialize the lists; will have double the entries if not."""
+
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Clear()
choiceObject.Append('') # Pad the first
item
for id, structure in self.structures.iteritems():
i = choiceObject.Append(structure['name'])
choiceObject.SetClientData(i, id)
def InitialGuessCombobox(self):
- for choiceName, guessList in
self.initialGuessDict.iteritems(): # i.e.
['skin', 'skin (0.5cm)']
- ChoiceObject = getattr(self,
choiceName) # i.e. self.choiceSkin
- for i in
range(ChoiceObject.GetCount()): #
combobox list ['', 'Optic', 'Skin', ...]
- if self.KeywordsInCombobox(ChoiceObject.GetString(i),
guessList) == True:
+ # i.e. ['skin', 'skin (0.5cm)']
+ for choiceName, guessList in self.initialGuessDict.iteritems():
+ ChoiceObject = getattr(self, choiceName)
+ # combobox list ['', 'Optic', 'Skin', ...]
+ for i in range(ChoiceObject.GetCount()):
+ if self.KeywordsInCombobox(ChoiceObject.GetString(i),
+ guessList) == True:
ChoiceObject.SetSelection(i)
def KeywordsInCombobox(self, comboboxString, guessList):
@@ -335,81 +349,73 @@
# NOTE: Lungs, Liver, and RenalCortex are actually THRESHOLDS (in
Gy),
# NOT volumes. This was only done for a simpler for_loop.
# See columns on GUI.
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- if hasattr(self, 'vol' + organName) == True: #
exclude statictext = max point
- VolObject = getattr(self, 'vol' + organName) # i.e.
self.volOptic
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ if hasattr(self, 'vol' + organName) == True:
+ VolObject = getattr(self, 'vol' + organName)
VolObject.Clear()
- def ResetLimitValues(self): # not
event based; do for all in dict
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- LimitObject = getattr(self, 'limit' + organName) # i.e.
self.limitOptic
+ def ResetLimitValues(self):
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ LimitObject = getattr(self, 'limit' + organName)
LimitObject.Clear()
- def ResetPlanValues(self): # not
event based; do for all in dict
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
+ def ResetPlanValues(self):
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ PlanObject = getattr(self, 'plan' + organName)
PlanObject.Clear()
def ResetImgs(self):
- for choiceName, organList in self.widgetDict.iteritems(): # i.e.
['Optic', 'OpticMax']
- for organName in organList: #
i.e. 'Optic'
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.imgOptic
- ImgObject.SetBitmap(self.GetBitmap('transparent.png'))
+ for choiceName, organList in self.widgetDict.iteritems():
+ for organName in organList:
+ ImgObject = getattr(self, 'img' + organName)
+ ImgObject.SetBitmap(self.imgTransparent)
def EnableChoices(self):
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Enable() # i.e.
self.choiceOptic.Enable()
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Enable()
def DisableChoices(self):
- choiceList = self.widgetDict.keys() # i.e.
['choiceOptic', 'choiceCochlea', ...]
- for choiceName in choiceList: #
i.e. 'choiceOptic'
- choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
- choiceObject.Enable(False) # i.e.
self.choiceOptic.Enable(False)
-
- def GetBitmap(self, string):
- img = os.path.join(os.path.dirname(__file__), string)
- img = wx.Image(img, wx.BITMAP_TYPE_ANY)
- img = wx.BitmapFromImage(img)
- return img
+ choiceList = self.widgetDict.keys()
+ for choiceName in choiceList:
+ choiceObject = getattr(self, choiceName)
+ choiceObject.Enable(False)
- def OnComboOrgan(self,
event=None): # event based; do for only
on combobox organ
- choiceItem =
event.GetInt() # i.e. userinput
----> index of selected organ
- choiceName =
event.GetEventObject().GetName() # i.e. choiceObject
(name of organ label)
- choiceObject = getattr(self,
choiceName) # i.e. choiceObject =
self.choiceOptic
- id =
choiceObject.GetClientData(choiceItem) # i.e. id =
self.choiceOptic.GetClientData(choiceItem)
- for organName in
self.widgetDict[choiceName]: # i.e.
['Optic', 'OpticMax']
- if id > 0: #
exclude choice(0) = ''
- #FindPlanObject = getattr(self, 'FindPlan' +
organName) # i.e. self.FindPlanOptic
- #FindPlanObject(id)
+ def OnComboOrgan(self, event=None): # event based
+ choiceItem = event.GetInt() # i.e. userinput->
index
+ choiceName = event.GetEventObject().GetName() # i.e. choiceObject
+ choiceObject = getattr(self, choiceName) # i.e.
self.choiceOptic
+ id = choiceObject.GetClientData(choiceItem)
+ for organName in self.widgetDict[choiceName]:
+ if id > 0: # exclude
choice(0) = ''
self.FindOrganPlan(id, organName)
else:
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.planOptic
+ PlanObject = getattr(self, 'plan' + organName)
+ ImgObject = getattr(self, 'img' + organName)
PlanObject.Clear()
- ImgObject.SetBitmap(self.GetBitmap('transparent.png'))
+ ImgObject.SetBitmap(self.imgTransparent)
def FindOrganPlan(self, id, organName):
- LimitObject = getattr(self, 'limit' + organName) # i.e.
self.planOptic
- PlanObject = getattr(self, 'plan' + organName) # i.e.
self.planOptic
- ImgObject = getattr(self, 'img' + organName) # i.e.
self.planOptic
+ LimitObject = getattr(self, 'limit' + organName)
+ PlanObject = getattr(self, 'plan' + organName)
+ ImgObject = getattr(self, 'img' + organName)
self.dvhdata[id] = dvhdata.DVH(self.dvhs[id])
- if hasattr(self, 'vol' + organName) == True: # exclude
statictext = max point
- VolObject = getattr(self, 'vol' + organName) # i.e.
self.volOptic
+ total_vol = dvhdata.CalculateVolume(self.structures[id])
+ if hasattr(self, 'vol' + organName) == True: # exclude
statictext
+ VolObject = getattr(self, 'vol' + organName)
if '%' in VolObject.GetValue(): #hilum
s = VolObject.GetValue()
s = s.rstrip('%')
formatted_vol = s
- if '> ' in LimitObject.GetValue(): #hilum and lung
+ if '> ' in LimitObject.GetValue(): #hilum and lung
s = LimitObject.GetValue()
s = s.lstrip('> ')
formatted_limit = s
- if 'Max' not in organName:
- total_vol = dvhdata.CalculateVolume(self.structures[id])
+ if 'Max' not in organName:
if 'formatted_vol' in locals():
Vol = float(formatted_vol)*100/total_vol
else:
@@ -421,21 +427,23 @@
crit_vol = str(round(crit_vol,1))
PlanObject.SetValue(crit_vol)
if float(PlanObject.GetValue()) > float(formatted_limit):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
else:
PlanObject.SetValue(dose)
if float(PlanObject.GetValue()) <
float(LimitObject.GetValue()):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
- else: # dose max
- dose = self.dvhdata[id].GetDoseConstraint(0) #dose at DVH tail
+ else: # dose max
+ voxelPointVol = 0.035 * 100/total_vol # 0.035 cc
is "voxel"
+ dose = self.dvhdata[id].GetDoseConstraint(voxelPointVol) #dose
at DVH tail
dose = str(dose/100)
PlanObject.SetValue(dose)
if float(PlanObject.GetValue()) <
float(LimitObject.GetValue()):
- ImgObject.SetBitmap(self.GetBitmap('check.png'))
+ ImgObject.SetBitmap(self.imgCheck)
else:
- ImgObject.SetBitmap(self.GetBitmap('flag.png'))
+ ImgObject.SetBitmap(self.imgFlag)
+
=======================================
--- /plugins/SRSDVHAnalysis/Analysis.xrc Fri Aug 24 13:47:45 2012
+++ /plugins/SRSDVHAnalysis/Analysis.xrc Wed Jan 23 18:55:27 2013
@@ -1,10 +1,12 @@
<?xml version="1.0" encoding="ISO-8859-1"?>
-<!-- generated by wxGlade 0.6.5 on Fri Aug 24 13:10:20 2012 -->
+<!-- generated by wxGlade 0.6.5 on Fri Sep 07 14:45:22 2012 -->
<resource version="2.3.0.1">
+ <object class="wxToolBar" name="toolbar1">
+ </object>
<object class="wxDialog" name="AnalysisPanel"
subclass="SRSDVHAnalysis.Analysis.AnalysisPanel">
<style>wxDEFAULT_DIALOG_STYLE|wxMINIMIZE_BOX|
wxDIALOG_NO_PARENT</style>
- <size>600, 978</size>
+ <size>600, 1009</size>
<object class="wxBoxSizer">
<orient>wxVERTICAL</orient>
<object class="sizeritem">
@@ -1419,7 +1421,7 @@
<flag>wxALIGN_CENTER_HORIZONTAL|
wxALIGN_CENTER_VERTICAL</flag>
<object class="wxStaticText"
name="label_39_copy_copy_copy">
<tooltip>Find this value by
taking organ volume and subtracting volume that received threshold
dose.</tooltip>
- <label>Plan value (Gy)</label>
+ <label>Plan value (cc)</label>
<font>
<style>normal</style>
<family>default</family>
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