If you have a set of mututally-exclusive choices, radio button is the correct UI component, definitely not checkbox.
Radio buttons should be created as a "group", not individually. PhET has 2 types of "radio button group" -- RectangularRadioButtonGroup and AquaRadioButtonGroup. Demos of radio button groups are in the "Buttons" screen of the sun demo application, runnable at sun/sun_en.html. Source code for the Buttons screen demos is sun/js/demo/ButtonsScreenView.
If that doesn't answer your question, provide more specifics, like a sketch of what you want the UI to look like, and how you want it to behave.
Chris Malley
PixelZoom, Inc.