The Alpheios fork of Morpheus, which includes built binaries and Greek stemlibs, and puts a wrapper on the morpheus output that adheres to the Alpheios Lexicon Schema can be found in the Alpheios GitHub repository.
I make sure to have a GPU allocated for me to run on, and then conda activate morpheus to ensure we are using the container. From there, I run the passthru_runner.sh script. When I run this script, I get this output: