ifreak
unread,Nov 15, 2012, 3:28:29 AM11/15/12Sign in to reply to author
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Hi, i was trying the suggestion of tree generation from distance matrix in another question, but it didnt work and that's the first time i use Dendropy
i have distance matrix A as follows inside a numpy array:
[[ 0 2 7 8 16 17]
[ 2 0 5 6 17 16]
[ 7 5 0 9 15 13]
[ 8 6 9 0 18 16]
[16 17 15 18 0 5]
[17 16 13 16 5 0]]
can i generate a character matrix from it in order to get the tree estimation using : tree = paup.estimate_tree(A, 'nj')
how can i generate the tree from this matrix ??
thank you