The NEWICK string has metadata annotations. Neither FigTree nor
Dendroscope understand this in NEWICK format, but they do in NEXUS format.
Solution:
(1) convert your file to NEXUS
or
(2) remove the metadata annotations (the stuff in square brackets)
FYI, if you upgrade to the latest development version of DendroPy you
can take advantage of the new ``dendropy-format.py`` utility to make the
conversion:
~~~
dendropy-format \
--from newick \
--to nexus \
result.tre > result.nex
~~~
You can upgrade by, for e.g.,:
~~~
python -m pip install --upgrade
git+
https://github.com/jeetsukumaran/DendroPy.git@development-master
~~~
-- jeet
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--
----------------------------------------------------
Jeet Sukumaran
----------------------------------------------------
Assistant Professor
Biology Department
San Diego State University
----------------------------------------------------
Lab:
https://sukumaranlab.org/
Blog:
https://jeetblogs.org/
Repositories:
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Calendar:
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Mailing Address:
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5500 Campanile Drive
San Diego, CA 92182-4614
----------------------------------------------------