New Release: DendroPy 3.6.0
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Jeet Sukumaran
Sep 1, 2010, 9:03:49 PM9/1/10
to DendroPy Announcements
DendroPy 3.6.0 has been released. Main update with this release:
parallelized SumTrees.
Release 3.6.0
-------------
New Features
^^^^^^^^^^^^
- SumTrees now can can run in parallel mode, with each input
source tree file handled in a separate process. The maximum number of
parallel processes can be specified by the '-m' or '--multiprocessing'
flag::
$ sumtrees.py -m 4 mb.run1.t mb.run2.t mb.run3.t mb.run4.t >
consensus.tre
$ sumtrees.py -multiprocessing=4 mb.run1.t mb.run2.t mb.run3.t
mb.run4.t > consensus.tre
- Tree comments now parsed and stored with trees (NEXUS and NEWICK
formats), allowing for processing of annotations such as tree weights
and calculated likelihoods.
As always, you can get the latest release from:
http://pypi.python.org/pypi/DendroPy
parallelized SumTrees.
Release 3.6.0
-------------
New Features
^^^^^^^^^^^^
- SumTrees now can can run in parallel mode, with each input
source tree file handled in a separate process. The maximum number of
parallel processes can be specified by the '-m' or '--multiprocessing'
flag::
$ sumtrees.py -m 4 mb.run1.t mb.run2.t mb.run3.t mb.run4.t >
consensus.tre
$ sumtrees.py -multiprocessing=4 mb.run1.t mb.run2.t mb.run3.t
mb.run4.t > consensus.tre
- Tree comments now parsed and stored with trees (NEXUS and NEWICK
formats), allowing for processing of annotations such as tree weights
and calculated likelihoods.
As always, you can get the latest release from:
http://pypi.python.org/pypi/DendroPy
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