DendroPy 4.1.0 has been released!!
Lots of new features, improvements, and bug fixes!
Major new features include:
- [SumTrees]: Collapse clades! "``--min-clade-freq``" applies to all summary targets (i.e., not just consensus trees, but user-specified as well as, e.g. MCCT trees).
- The Protracted Speciation birth-death model: a Birth-Death process with explicit modeling of speciation-as-a-process rather than speciation-as-an-event by incorporating the lag between speciation initiation and speciation completion.
*LOTS* more happening under the hood! For more information:
Get it now with:
$ sudo pip install --upgrade dendropy
$ sudo pip install -U dendropy
If you are working out of a Git repo:
$ git pull origin
$ python setup.py build
$ sudo python setup.py develop
(note: ``sudo`` should be used only if you are installing system-wide using your system Python).