Re: [delly-users] what does hg19.excl mean

[Tobias Rausch]

Hi Gu,

It's a BED file with regions that are excluded from SV calling such as centromeres and telomeres. In these regions, accurate SV predictions are not possible with illumina data. You can also exclude entire chromosomes such as unplaced contigs or chrM.

Delly ships with some templates for various genomes:

https://github.com/dellytools/delly/tree/master/excludeTemplates

Best, Tobias

On Fri, Jul 21, 2017 at 8:19 AM, Gu <lang...@gmail.com> wrote:

Hi, all,

May I ask what does hg19.excl mean?

Is this the annotation file? So will the bed format or gff file is ok?


Best,

Gu

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