RR + RV is almost 250

[fengqing dong]

Hi Tobias，
I ncountered the same issue as  https://groups.google.com/g/delly-users/c/u_GLNs1rH6A/m/kCdS-9UGBgAJ 

in my  vcf file,   RR + RV is  almost  250 .  The result seems a bit problematic. HOW TO FIX IT?

The delly version is 1.1.6.

The command:
delly call  -g GRCh38.p13.genome.fa -o SublibSH23CDx001M001.sv.bcf   SublibSH23CDx001M001.marked_dup.BQSR.abra.bam  > delly.log
bcftools view SublibSH23CDx001M001.sv2.bcf > SublibSH23CDx001M001.sv.raw.vcf

thanks

[Tobias Rausch]

delly call --max-geno-count 10000 ... sets the maximum genotyping depth to 10000 instead of the default 250.

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[Bm]

Hi Dell-users

 Not directly relevant, but was looking to use this thread to request that if anyone is actively hiring for a software engineer role in the US(with sponsorship support), kindly please feel free to shoot me an email. I would love to discuss my professional experience and background in detail. I was recently laid off from Microsoft. 

Regards,

Balraj

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