Dear all,
I have just released delly v2.0.0, adding new capabilities for long-read SV detection:
* HP-tag aware with phased SV output for haplotype-tagged BAMs
* SV subtyping for mobile element insertions, tandem repeats, and NUMTs
* modBAM support with SV methylation annotation
https://github.com/dellytools/delly/releasesFeedback is very welcome!
Best, Tobias