Deformetrica on V100

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andrea...@gmail.com

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May 18, 2019, 12:15:44 AM5/18/19
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Dear all:

I am trying to execute deformetrica on a Tesla V100. I can execute it on a P100 without any issues.
If I run deformetrica on a V100 (default settings; test case examples/registration/image/3d/brains) deformetrica exits after 1 iteration with the message:

CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL

(optimizer: L-BFGS). If I switch to gradient ascent I get a line search error.

If I run the same problem on a P100 the solver converges / runs until max iter (more precisely, I get the output: ">> STOP: TOTAL NO. of ITERATIONS EXCEEDS LIMIT").

I use CUDA/9.2.88 in combination with python/3.6. I compile using the default options (python setup.py build; python setup.py install --prefix PATH).

Is this a SciPy issue? Do you have any suggestions?

Let me know if you need additional specifications.

Thanks
Andreas

Output of nvidia-smi:

+-----------------------------------------------------------------------------+
| NVIDIA-SMI 410.48                 Driver Version: 410.48                    |
|-------------------------------+----------------------+----------------------+
| GPU  Name        Persistence-M| Bus-Id        Disp.A | Volatile Uncorr. ECC |
| Fan  Temp  Perf  Pwr:Usage/Cap|         Memory-Usage | GPU-Util  Compute M. |
|===============================+======================+======================|
|   0  Tesla V100-PCIE...  On   | 00000000:0D:00.0 Off |                    0 |
| N/A   25C    P0    25W / 250W |      0MiB / 16130MiB |      0%      Default |
+-------------------------------+----------------------+----------------------+

+-----------------------------------------------------------------------------+
| Processes:                                                       GPU Memory |
|  GPU       PID   Type   Process name                             Usage      |
|=============================================================================|
|  No running processes found                                                 |
+-----------------------------------------------------------------------------+

Benoit Martin

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Jun 17, 2019, 4:08:55 AM6/17/19
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Hello Andreas,

Sorry for the delay in my response to your questions.

Could you try setting up a conda environment as described on the website (http://www.deformetrica.org) ?
This could simply be a packaging error. The setup.py script is usually used by the continuous integration to build the conda packages.

Kindly,

Benoit

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