error message :E::hts_hopen

[Varun Suresh]

Hi,

I am trying to run deeptools with Sorted bam files converted to Bam.bai files (using samtools ) as the input and I get the following error, upon command.

bamCoverage -b Input_foxg1_2.sorted_i.bam -o Input2.bw


[E::hts_hopen] Failed to open file Input_foxg1_2.sorted_i.bam
[E::hts_open_format] Failed to open file Input_foxg1_2.sorted_i.bam
[E::hts_hopen] Failed to open file Input_foxg1_2.sorted_i.bam
[E::hts_open_format] Failed to open file Input_foxg1_2.sorted_i.bam
The file 'Input_foxg1_2.sorted_i.bam' does not exist

Can you please explain, what is the error?

Varun

Varun Suresh,

Research Scholar,

STole Lab, Department of Biological Sciences,

Tata Institute of Fundamental Research,

Mumbai 400005.