peak call coverage from chip seq data

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Ranjita Thapa

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Oct 10, 2019, 1:34:10 PM10/10/19

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Hi,

I have a question on peak call using deeptools. I am doing peak call from chip seq data. I do have a peak calls output using MACS2 tool. I want to estimate the peak coverage statistics for upstream region, downstream region and gene body for all the genes (>30,000).

I am wondering if deeptools could handle this. I would appreciate your suggestion.