installation problem

[jcch...@gmail.com]

Hi,
I installed deeptools with conda install -c bioconda deeptools
The installation process seemed ok without any problem. But when I try to use any command, the error appears as follow,

ImportError: /home/jingchen/.local/lib/python2.7/site-packages/numpy/random/mtrand.so: undefined symbol: PyFPE_jbuf

Anyone knows what the problem is and how to fix it? Thank you.

[Fidel Ramirez]

Seems to me like a problem with different versions of numpy. Where did you install anaconda? deeptools should only access the numpy within the anaconda folder.

Do you see anything if you type:

echo $PYTHONPATH

-fidel

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Fidel Ramirez

[jcch...@gmail.com]

No I did not see anything

[Fidel Ramirez]

This problem is not directly related to deeptools but to your installation of anaconda which is using the wrong numpy libraries.

How did you install anaconda?

-fidel

On Tue, Jan 26, 2016 at 6:25 PM, <jcch...@gmail.com> wrote:

No I did not see anything

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Fidel Ramirez

[jcch...@gmail.com]

I downloaded the .sh file and followed the instruction as follow
bash Anaconda2-2.4.1-Linux-x86_64.sh

And it did not give me any trouble.

[jcch...@gmail.com]

Thank you, Fidel. Problem solved. I have a newer version of numpy installed before I install anaconda2. After I uninstall the newer version. deeptools worked normally.

[Fidel Ramirez]

great to heat that.

On Tue, Jan 26, 2016 at 7:39 PM, <jcch...@gmail.com> wrote:

Thank you, Fidel. Problem solved. I have a newer version of numpy installed before I install anaconda2. After I uninstall the newer version. deeptools worked normally.

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Fidel Ramirez