having error finished with non-zero exit stats (0)

[Alberto Arroyo]

 I have this problem, about a week ago I upgraded to 0.8.0 version and started running the tests and the tutorial example. Everything was going well, I'm a new user with very little experience in programming, but I was starting to program deepdive and getting normal results. The next day that I got to continue programming, I got these errors, during compilation it was an error related to pango.
This is what I got on the terminal:

2016-03-17 09:50:05.453181 Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 70: non-double matrix element
2016-03-17 09:50:05.453331 Fontconfig error: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 70: non-double matrix element
2016-03-17 09:50:05.453448 Fontconfig warning: "/etc/fonts/conf.d/10-scale-bitmap-fonts.conf", line 78: saw unknown, expected number
2016-03-17 09:50:05.626570
2016-03-17 09:50:05.626680 (process:22499): Pango-CRITICAL **: No modules found:
2016-03-17 09:50:05.626727 No builtin or dynamically loaded modules were found.
2016-03-17 09:50:05.626771 PangoFc will not work correctly.
2016-03-17 09:50:05.626817 This probably means there was an error in the creation of:
2016-03-17 09:50:05.626872   '/etc/pango/pango.modules'
2016-03-17 09:50:05.626913 You should create this file by running:
2016-03-17 09:50:05.626953   pango-querymodules > '/etc/pango/pango.modules'
2016-03-17 09:50:05.628766
2016-03-17 09:50:05.628868 (process:22499): Pango-WARNING **: failed to choose a font, expect ugly output. engine-type='PangoRenderFc', script='latin'
2016-03-17 09:50:05.653330  run/dataflow.svg
2016-03-17 09:50:05.654462   (file:///home/netza/deepdive-0.8-STABLE/examples/spouse/run/dataflow.svg)


The second error I got it when I tried to run the extractor, I reinstalled ubuntu, and deepdive too, several times, but I followed getting this error related to the directory usr/local/util/computer-driver/local/compute-execute. I don't know about how to configure these kind of files, but I hope you can help me out, I was already running deepdive and starting to create and application when this started to happen.

2016-03-17 09:48:34.575528 [ERROR] command='"$DEEPDIVE_APP"/udf/nlp_markup.sh': PID 21858: finished with non-zero exit status (0)
2016-03-17 09:48:34.575821 /home/netza/local/util/compute-driver/local/compute-execute: line 138: 21860 Terminated              DEEPDIVE_CURRENT_PROCESS_INDEX=$i "$SHELL" -c "$command" < process-$i.input > process-$i.output
2016-03-17 09:48:34.575871 /home/netza/local/util/compute-driver/local/compute-execute: line 138: 21864 Terminated              mkmimo process-*.output \> output_computed-*
2016-03-17 09:48:34.575904 /home/netza/local/util/compute-driver/local/compute-execute: line 138: 21865 Terminated              deepdive-load "$output_relation_tmp" output_computed-*
2016-03-17 09:48:34.575933 /home/netza/local/util/compute-driver/local/compute-execute: line 138: 21870 Terminated              mkmimo feed_processes-* \> process-*.input

[Helen Greenhough]

Hello Alberto, did you ever figure this out? I am getting the same error.

[Jaeho Shin]

Hi Helen and Alberto,

Sorry, this long standing reliability issue is related to the way we built and used our old CoreNLP wrapper.  Given that we are now in the process of merging and releasing our new interface and tutorial, please keep an eye out for the official fix. In fact, if you have Docker installed on your machine, you can try it with very little effort.

INSTALLER_BRANCH=tutorial-in-a-notebook RELEASE=tutorial-in-a-notebook \

bash <(curl -fsSL git.io/getdeepdive) deepdive_docker_sandbox

See also: https://github.com/HazyResearch/deepdive/blob/tutorial-in-a-notebook/doc/installation.md#launch-without-installing

~Jaeho

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[Helen Greenhough]

Many thanks, I now have docker 1.12.3 and docker-compose running on an ubuntu instance v16.

I also downloaded deepdive, postgres.

When trying the deepdive_socker_sandbox i get 

ERROR: Couldn't connect to Docker daemon at http+docker://localunixsocket - is it running?

If it's at a non-standard location, specify the URL with the DOCKER_HOST environment variable.

## Failed installation for deepdive_docker_sandbox

Any ideas?

[Bruno Gallien]

Hi,
Did you add the user to docker group ?.
I exactly followed the install I found on Linoxide ( Google : Linoxide, Ubuntu 16.04, Docker install ) and I don't have the issue anymore.

Cheers
Bruno

[Alberto Arroyo]

Hi Jaheo, I installed the docker-compose and run the docker_sandbox through the installation command.
I used this command to :

docker-compose run --rm --entrypoint bash deepdive-notebooks

Inside the application I could load data to a table, but when I tried to run the extractors it doesn't work.
The corenlp doesn't work either, I used the command deepdive corenlp start. Should I run form this terminal? http://0.0.0.0:8888/terminals/1
deepdive corenlp start also gets stuck with the message starting...

I really started using the docker-compose because I couldn't use bazaar in the stable version.
I followed the recommendations for using docker in the issues but I don't know for sure what steps I should follow.

I hope you can give me some advice for using bazaar parser on some way, either docker or the stable version.

[Bruno Gallien]

Hi Alberto. 

Did you try :

export CORENLP_JAVAOPTS=-Xmx4g

Before launching CoreNLP /

Cheers

Bruno

[Alberto Arroyo]

Thank you for your answer Bruno, should I run that command on the sandbox or on the stable version? Sure I will try it.

I already could run bazaar on the stable version, the one that gets downloaded with the tests run from the installation command for linux, but if I run the parser with a 2 MB file my computer freezes, and keeps really slow after I cancel the execution.
When I run the parser with the comand  $ cat input.json | ./run.sh -i json -k "item_id" -v "content" > output.tsv
the parser runs faster but then the problem is the json format, which gives me error.

Do you have any advice for the json format? or should I keep trying with the sandbox?
I appreciate the advices.

[Keith Lewish]

I'm getting this same error when running the spouses example.  Is there a fix for this? It wasn't clear there was reading the thread.