Installation
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Manohar Teja
Jan 15, 2026, 10:58:13 AMJan 15
to dedalu...@googlegroups.com
Dear Dedalus users,
I am hoping to install and run Dedalus on a HPC facility called Isambard 3 Grace (https://docs.isambard.ac.uk/specs/#system-specifications-isambard-3-grace), which uses the CPU architecture ARM. The documentation quotes "Grace uses the CPU architecture ARM (also known as aarch64). As such, code needs to be compiled for aarch64 and container images need to support aarch64. Existing code compiled for x86_64 (including Conda environments) will not work."
From the installation I see that Dedalus tries to use x86 architecture. From "(Apple Silicon only) There are currently upstream issues in scipy that prevent Dedalus from natively running on arm64 at this time.
If you are using a Mac with an Apple Silicon processor, ensure that Rosetta is installed following these instructions and instruct the conda environment to use x86 packages:", the ARM architecture users are being forced to use x86 using Rosetta. Am I correct?
Given that my supercomputer architecture will not work with x86, does it mean I cannot use Dedalus on this HPC facility?
I tried installing and I see similar error as others, see below
(base) mk737.e6a@login01:~> bash conda_install_dedalus3.sh
Setting up conda with 'source /home/e6a/mk737.e6a/miniforge3/etc/profile.d/conda.sh'
Preventing conda from looking in ~/.local with 'export PYTHONNOUSERSITE=1'
Preventing conda from looking in PYTHONPATH with 'unset PYTHONPATH'
WARNING: Conda environment 'dedalus3' already exists
Proceed ([y]/n)? y
Setting conda-forge as strict priority channel
Warning: 'conda-forge' already in 'channels' list, moving to the top
Installing conda-forge python, pip, wheel, setuptools, cython
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- cython
- pip
- python=3.12
- setuptools
- wheel
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2026.1.4 | hbd8a1cb_0 143 KB conda-forge
cython-3.2.4 | py312he940de5_0 3.5 MB conda-forge
icu-78.2 | hb1525cb_0 12.3 MB conda-forge
ld_impl_linux-aarch64-2.45 |default_h1979696_105 856 KB conda-forge
libgcc-15.2.0 | h8acb6b2_16 606 KB conda-forge
libgcc-ng-15.2.0 | he9431aa_16 27 KB conda-forge
libgomp-15.2.0 | h8acb6b2_16 574 KB conda-forge
libsqlite-3.51.2 | h10b116e_0 923 KB conda-forge
libstdcxx-15.2.0 | hef695bb_16 5.3 MB conda-forge
libuuid-2.41.3 | h1022ec0_0 42 KB conda-forge
readline-8.3 | hb682ff5_0 349 KB conda-forge
tzdata-2025c | hc9c84f9_1 116 KB conda-forge
------------------------------------------------------------
Total: 24.6 MB
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2026.1.4-hbd8a1cb_0
cython conda-forge/linux-aarch64::cython-3.2.4-py312he940de5_0
icu conda-forge/linux-aarch64::icu-78.2-hb1525cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.45-default_h1979696_105
libexpat conda-forge/linux-aarch64::libexpat-2.7.3-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-h8acb6b2_16
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_16
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-h8acb6b2_16
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.51.2-h10b116e_0
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-hef695bb_16
libuuid conda-forge/linux-aarch64::libuuid-2.41.3-h1022ec0_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.6.0-h8e36d6e_0
pip conda-forge/noarch::pip-25.3-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.12-h91f4b29_1_cpython
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
readline conda-forge/linux-aarch64::readline-8.3-hb682ff5_0
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h561c983_103
tzdata conda-forge/noarch::tzdata-2025c-hc9c84f9_1
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
zstd conda-forge/linux-aarch64::zstd-1.5.7-h85ac4a6_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing conda-forge openblas, numpy, scipy
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- libblas[build=*openblas]
- numpy
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.11.0 |5_haddc8a3_openblas 18 KB conda-forge
libcblas-3.11.0 |5_hd72aa62_openblas 18 KB conda-forge
libgfortran-15.2.0 | he9431aa_16 27 KB conda-forge
libgfortran5-15.2.0 | h1b7bec0_16 1.4 MB conda-forge
liblapack-3.11.0 |5_h88aeb00_openblas 18 KB conda-forge
libopenblas-0.3.30 |pthreads_h9d3fd7e_4 4.7 MB conda-forge
numpy-2.4.1 | py312h6615c27_0 7.5 MB conda-forge
scipy-1.17.0 | py312he5b0e10_0 16.0 MB conda-forge
------------------------------------------------------------
Total: 29.7 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.11.0-5_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.11.0-5_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_16
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h1b7bec0_16
liblapack conda-forge/linux-aarch64::liblapack-3.11.0-5_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_4
numpy conda-forge/linux-aarch64::numpy-2.4.1-py312h6615c27_0
scipy conda-forge/linux-aarch64::scipy-1.17.0-py312he5b0e10_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing conda-forge compilers, openmpi, mpi4py
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- compilers
- mpi4py
- openmpi
- openmpi-mpicc
The following packages will be downloaded:
package | build
---------------------------|-----------------
binutils-2.45 |default_hf1166c9_105 35 KB conda-forge
binutils_impl_linux-aarch64-2.45|default_h5f4c503_105 4.6 MB conda-forge
binutils_linux-aarch64-2.45|default_hf1166c9_105 36 KB conda-forge
c-compiler-1.11.0 | hdceaead_0 7 KB conda-forge
compilers-1.11.0 | h8af1aa0_0 7 KB conda-forge
conda-gcc-specs-14.3.0 | hadff5d6_16 30 KB conda-forge
cxx-compiler-1.11.0 | h7b35c40_0 7 KB conda-forge
fortran-compiler-1.11.0 | h151373c_0 7 KB conda-forge
gcc-14.3.0 | h2e72a27_16 28 KB conda-forge
gcc_impl_linux-aarch64-14.3.0| hda29b82_16 65.9 MB conda-forge
gcc_linux-aarch64-14.3.0 | h118592a_17 28 KB conda-forge
gfortran-14.3.0 | ha384071_16 28 KB conda-forge
gfortran_impl_linux-aarch64-14.3.0| h6b0ea1e_16 14.1 MB conda-forge
gfortran_linux-aarch64-14.3.0| hf63571e_17 26 KB conda-forge
gxx-14.3.0 | ha384071_16 28 KB conda-forge
gxx_impl_linux-aarch64-14.3.0| h0d4f5d4_16 12.9 MB conda-forge
gxx_linux-aarch64-14.3.0 | h28821e8_17 27 KB conda-forge
kernel-headers_linux-aarch64-4.18.0| h05a177a_9 1.2 MB conda-forge
libgcc-devel_linux-aarch64-14.3.0| h25ba3ff_116 2.3 MB conda-forge
libsanitizer-14.3.0 | hedb4206_16 7.2 MB conda-forge
libstdcxx-devel_linux-aarch64-14.3.0| h57c8d61_116 16.7 MB conda-forge
mpi-1.0.1 | openmpi 6 KB conda-forge
mpi4py-4.1.1 |py312hb998f61_102 801 KB conda-forge
openmpi-5.0.8 |external_h1446ca1_108 22 KB conda-forge
openmpi-mpicc-5.0.8 | h3d6feda_108 12 KB conda-forge
sysroot_linux-aarch64-2.28 | h585391f_9 22.5 MB conda-forge
------------------------------------------------------------
Total: 148.5 MB
The following NEW packages will be INSTALLED:
binutils conda-forge/linux-aarch64::binutils-2.45-default_hf1166c9_105
binutils_impl_lin~ conda-forge/linux-aarch64::binutils_impl_linux-aarch64-2.45-default_h5f4c503_105
binutils_linux-aa~ conda-forge/linux-aarch64::binutils_linux-aarch64-2.45-default_hf1166c9_105
c-compiler conda-forge/linux-aarch64::c-compiler-1.11.0-hdceaead_0
compilers conda-forge/linux-aarch64::compilers-1.11.0-h8af1aa0_0
conda-gcc-specs conda-forge/linux-aarch64::conda-gcc-specs-14.3.0-hadff5d6_16
cxx-compiler conda-forge/linux-aarch64::cxx-compiler-1.11.0-h7b35c40_0
fortran-compiler conda-forge/linux-aarch64::fortran-compiler-1.11.0-h151373c_0
gcc conda-forge/linux-aarch64::gcc-14.3.0-h2e72a27_16
gcc_impl_linux-aa~ conda-forge/linux-aarch64::gcc_impl_linux-aarch64-14.3.0-hda29b82_16
gcc_linux-aarch64 conda-forge/linux-aarch64::gcc_linux-aarch64-14.3.0-h118592a_17
gfortran conda-forge/linux-aarch64::gfortran-14.3.0-ha384071_16
gfortran_impl_lin~ conda-forge/linux-aarch64::gfortran_impl_linux-aarch64-14.3.0-h6b0ea1e_16
gfortran_linux-aa~ conda-forge/linux-aarch64::gfortran_linux-aarch64-14.3.0-hf63571e_17
gxx conda-forge/linux-aarch64::gxx-14.3.0-ha384071_16
gxx_impl_linux-aa~ conda-forge/linux-aarch64::gxx_impl_linux-aarch64-14.3.0-h0d4f5d4_16
gxx_linux-aarch64 conda-forge/linux-aarch64::gxx_linux-aarch64-14.3.0-h28821e8_17
kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-aarch64-4.18.0-h05a177a_9
libgcc-devel_linu~ conda-forge/noarch::libgcc-devel_linux-aarch64-14.3.0-h25ba3ff_116
libsanitizer conda-forge/linux-aarch64::libsanitizer-14.3.0-hedb4206_16
libstdcxx-devel_l~ conda-forge/noarch::libstdcxx-devel_linux-aarch64-14.3.0-h57c8d61_116
mpi conda-forge/noarch::mpi-1.0.1-openmpi
mpi4py conda-forge/linux-aarch64::mpi4py-4.1.1-py312hb998f61_102
openmpi conda-forge/linux-aarch64::openmpi-5.0.8-external_h1446ca1_108
openmpi-mpicc conda-forge/linux-aarch64::openmpi-mpicc-5.0.8-h3d6feda_108
sysroot_linux-aar~ conda-forge/noarch::sysroot_linux-aarch64-2.28-h585391f_9
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing conda-forge fftw
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- fftw[build=*openmpi*]
The following packages will be downloaded:
package | build
---------------------------|-----------------
fftw-3.3.10 |mpi_openmpi_h79548e3_11 1.4 MB conda-forge
------------------------------------------------------------
Total: 1.4 MB
The following NEW packages will be INSTALLED:
fftw conda-forge/linux-aarch64::fftw-3.3.10-mpi_openmpi_h79548e3_11
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing parallel conda-forge hdf5, h5py
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- h5py[build=mpi*]
- hdf5[build=mpi*]
The following packages will be downloaded:
package | build
---------------------------|-----------------
c-ares-1.34.6 | he30d5cf_0 212 KB conda-forge
cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge
cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge
h5py-3.15.1 |mpi_openmpi_py312he5ab562_1 1.2 MB conda-forge
hdf5-1.14.6 |mpi_openmpi_h60c5fb8_4 3.9 MB conda-forge
libaec-1.1.4 | h1e66f74_0 36 KB conda-forge
libcurl-8.18.0 | h7bfdcfb_0 471 KB conda-forge
libstdcxx-ng-15.2.0 | hdbbeba8_16 27 KB conda-forge
------------------------------------------------------------
Total: 5.9 MB
The following NEW packages will be INSTALLED:
c-ares conda-forge/linux-aarch64::c-ares-1.34.6-he30d5cf_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
h5py conda-forge/linux-aarch64::h5py-3.15.1-mpi_openmpi_py312he5ab562_1
hdf5 conda-forge/linux-aarch64::hdf5-1.14.6-mpi_openmpi_h60c5fb8_4
keyutils conda-forge/linux-aarch64::keyutils-1.6.3-h86ecc28_0
krb5 conda-forge/linux-aarch64::krb5-1.21.3-h50a48e9_0
libaec conda-forge/linux-aarch64::libaec-1.1.4-h1e66f74_0
libcurl conda-forge/linux-aarch64::libcurl-8.18.0-h7bfdcfb_0
libedit conda-forge/linux-aarch64::libedit-3.1.20250104-pl5321h976ea20_0
libev conda-forge/linux-aarch64::libev-4.33-h31becfc_2
libnghttp2 conda-forge/linux-aarch64::libnghttp2-1.67.0-ha888d0e_0
libssh2 conda-forge/linux-aarch64::libssh2-1.11.1-h18c354c_0
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-15.2.0-hdbbeba8_16
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing conda-forge docopt, matplotlib
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/e6a/mk737.e6a/miniforge3/envs/dedalus3
added / updated specs:
- docopt
- matplotlib
The following packages will be downloaded:
package | build
---------------------------|-----------------
alsa-lib-1.2.15.2 | he30d5cf_0 600 KB conda-forge
brotli-1.2.0 | hd651790_1 20 KB conda-forge
brotli-bin-1.2.0 | he30d5cf_1 20 KB conda-forge
cairo-1.18.4 | h0b6afd8_1 905 KB conda-forge
contourpy-1.3.3 | py312h4f740d2_3 299 KB conda-forge
cycler-0.12.1 | pyhcf101f3_2 14 KB conda-forge
cyrus-sasl-2.1.28 | h6c5dea3_0 222 KB conda-forge
dbus-1.16.2 | h70963c4_1 469 KB conda-forge
docopt-0.6.2 | pyhd8ed1ab_2 18 KB conda-forge
double-conversion-3.4.0 | hfae3067_0 70 KB conda-forge
font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge
font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge
font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge
font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge
fontconfig-2.15.0 | h8dda3cd_1 271 KB conda-forge
fonts-conda-ecosystem-1 | 0 4 KB conda-forge
fonts-conda-forge-1 | hc364b38_1 4 KB conda-forge
fonttools-4.61.1 | py312ha4530ae_0 2.8 MB conda-forge
freetype-2.14.1 | h8af1aa0_0 169 KB conda-forge
graphite2-1.3.14 | hfae3067_2 100 KB conda-forge
harfbuzz-12.3.0 | h1134a53_0 2.3 MB conda-forge
kiwisolver-1.4.9 | py312h1683e8e_2 81 KB conda-forge
lcms2-2.18 | h9d5b58d_0 286 KB conda-forge
lerc-4.0.0 | hfdc4d58_1 222 KB conda-forge
libbrotlicommon-1.2.0 | he30d5cf_1 78 KB conda-forge
libbrotlidec-1.2.0 | he30d5cf_1 32 KB conda-forge
libbrotlienc-1.2.0 | he30d5cf_1 302 KB conda-forge
libclang-cpp21.1-21.1.8 |default_he95a3c9_1 19.7 MB conda-forge
libclang13-21.1.8 |default_h94a09a5_1 11.6 MB conda-forge
libcups-2.3.3 | h5cdc715_5 4.3 MB conda-forge
libdeflate-1.25 | h1af38f5_0 69 KB conda-forge
libdrm-2.4.125 | he30d5cf_1 336 KB conda-forge
libegl-1.7.0 | hd24410f_2 52 KB conda-forge
libfreetype-2.14.1 | h8af1aa0_0 8 KB conda-forge
libfreetype6-2.14.1 | hdae7a39_0 413 KB conda-forge
libgl-1.7.0 | hd24410f_2 142 KB conda-forge
libglib-2.86.3 | hf53f6bf_0 3.9 MB conda-forge
libglvnd-1.7.0 | hd24410f_2 149 KB conda-forge
libglx-1.7.0 | hd24410f_2 76 KB conda-forge
libjpeg-turbo-3.1.2 | he30d5cf_0 676 KB conda-forge
libllvm21-21.1.8 | hfd2ba90_0 41.1 MB conda-forge
libntlm-1.4 | hf897c2e_1002 39 KB conda-forge
libopengl-1.7.0 | hd24410f_2 55 KB conda-forge
libpciaccess-0.18 | h86ecc28_0 29 KB conda-forge
libpng-1.6.54 | h1abf092_0 332 KB conda-forge
libpq-18.1 | hf8816c8_3 2.7 MB conda-forge
libtiff-4.7.1 | hdb009f0_1 477 KB conda-forge
libvulkan-loader-1.4.328.1 | h8b8848b_0 210 KB conda-forge
libwebp-base-1.6.0 | ha2e29f5_0 351 KB conda-forge
libxcb-1.17.0 | h262b8f6_0 388 KB conda-forge
libxkbcommon-1.13.1 | h3c6a4c8_0 843 KB conda-forge
libxml2-2.15.1 | h825857f_1 47 KB conda-forge
libxml2-16-2.15.1 | h79dcc73_1 586 KB conda-forge
libxslt-1.1.43 | h6700d25_1 247 KB conda-forge
matplotlib-3.10.8 | py312h8025657_0 17 KB conda-forge
matplotlib-base-3.10.8 | py312h9d0c5ba_0 7.8 MB conda-forge
munkres-1.1.4 | pyhd8ed1ab_1 15 KB conda-forge
openjpeg-2.5.4 | h5da879a_0 383 KB conda-forge
openldap-2.6.10 | h30c48ee_0 882 KB conda-forge
pcre2-10.47 | hf841c20_0 1.1 MB conda-forge
pillow-12.1.0 | py312h3b21937_0 987 KB conda-forge
pixman-0.46.4 | h7ac5ae9_1 350 KB conda-forge
pthread-stubs-0.4 | h86ecc28_1002 8 KB conda-forge
pyparsing-3.3.1 | pyhcf101f3_0 108 KB conda-forge
pyside6-6.10.1 | py312h4810df5_0 7.0 MB conda-forge
python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge
qhull-2020.2 | h70be974_5 542 KB conda-forge
qt6-main-6.10.1 | h5343e53_4 55.8 MB conda-forge
six-1.17.0 | pyhe01879c_1 18 KB conda-forge
tornado-6.5.3 | py312hefbd42c_0 833 KB conda-forge
unicodedata2-17.0.0 | py312hcd1a082_1 399 KB conda-forge
wayland-1.24.0 | h4f8a99f_1 324 KB conda-forge
xcb-util-0.4.1 | hca56bd8_2 21 KB conda-forge
xcb-util-cursor-0.1.6 | he30d5cf_0 21 KB conda-forge
xcb-util-image-0.4.0 | h5c728e9_2 24 KB conda-forge
xcb-util-keysyms-0.4.1 | h5c728e9_0 14 KB conda-forge
xcb-util-renderutil-0.3.10 | h5c728e9_0 18 KB conda-forge
xcb-util-wm-0.4.2 | h5c728e9_0 50 KB conda-forge
xkeyboard-config-2.46 | he30d5cf_0 387 KB conda-forge
xorg-libice-1.1.2 | h86ecc28_0 59 KB conda-forge
xorg-libsm-1.2.6 | h0808dbd_0 28 KB conda-forge
xorg-libx11-1.8.12 | hca56bd8_0 845 KB conda-forge
xorg-libxau-1.0.12 | he30d5cf_1 16 KB conda-forge
xorg-libxcomposite-0.4.6 | h86ecc28_2 14 KB conda-forge
xorg-libxcursor-1.2.3 | h86ecc28_0 34 KB conda-forge
xorg-libxdamage-1.1.6 | h86ecc28_0 13 KB conda-forge
xorg-libxdmcp-1.1.5 | he30d5cf_1 21 KB conda-forge
xorg-libxext-1.3.6 | h57736b2_0 50 KB conda-forge
xorg-libxfixes-6.0.2 | he30d5cf_0 20 KB conda-forge
xorg-libxi-1.8.2 | h57736b2_0 47 KB conda-forge
xorg-libxrandr-1.5.4 | h86ecc28_0 29 KB conda-forge
xorg-libxrender-0.9.12 | h86ecc28_0 33 KB conda-forge
xorg-libxtst-1.2.5 | h57736b2_3 33 KB conda-forge
xorg-libxxf86vm-1.1.6 | h86ecc28_0 18 KB conda-forge
zlib-ng-2.3.2 | ha7cb516_1 118 KB conda-forge
------------------------------------------------------------
Total: 179.1 MB
The following NEW packages will be INSTALLED:
alsa-lib conda-forge/linux-aarch64::alsa-lib-1.2.15.2-he30d5cf_0
brotli conda-forge/linux-aarch64::brotli-1.2.0-hd651790_1
brotli-bin conda-forge/linux-aarch64::brotli-bin-1.2.0-he30d5cf_1
cairo conda-forge/linux-aarch64::cairo-1.18.4-h0b6afd8_1
contourpy conda-forge/linux-aarch64::contourpy-1.3.3-py312h4f740d2_3
cycler conda-forge/noarch::cycler-0.12.1-pyhcf101f3_2
cyrus-sasl conda-forge/linux-aarch64::cyrus-sasl-2.1.28-h6c5dea3_0
dbus conda-forge/linux-aarch64::dbus-1.16.2-h70963c4_1
docopt conda-forge/noarch::docopt-0.6.2-pyhd8ed1ab_2
double-conversion conda-forge/linux-aarch64::double-conversion-3.4.0-hfae3067_0
font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0
font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0
font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0
font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3
fontconfig conda-forge/linux-aarch64::fontconfig-2.15.0-h8dda3cd_1
fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0
fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-hc364b38_1
fonttools conda-forge/linux-aarch64::fonttools-4.61.1-py312ha4530ae_0
freetype conda-forge/linux-aarch64::freetype-2.14.1-h8af1aa0_0
graphite2 conda-forge/linux-aarch64::graphite2-1.3.14-hfae3067_2
harfbuzz conda-forge/linux-aarch64::harfbuzz-12.3.0-h1134a53_0
kiwisolver conda-forge/linux-aarch64::kiwisolver-1.4.9-py312h1683e8e_2
lcms2 conda-forge/linux-aarch64::lcms2-2.18-h9d5b58d_0
lerc conda-forge/linux-aarch64::lerc-4.0.0-hfdc4d58_1
libbrotlicommon conda-forge/linux-aarch64::libbrotlicommon-1.2.0-he30d5cf_1
libbrotlidec conda-forge/linux-aarch64::libbrotlidec-1.2.0-he30d5cf_1
libbrotlienc conda-forge/linux-aarch64::libbrotlienc-1.2.0-he30d5cf_1
libclang-cpp21.1 conda-forge/linux-aarch64::libclang-cpp21.1-21.1.8-default_he95a3c9_1
libclang13 conda-forge/linux-aarch64::libclang13-21.1.8-default_h94a09a5_1
libcups conda-forge/linux-aarch64::libcups-2.3.3-h5cdc715_5
libdeflate conda-forge/linux-aarch64::libdeflate-1.25-h1af38f5_0
libdrm conda-forge/linux-aarch64::libdrm-2.4.125-he30d5cf_1
libegl conda-forge/linux-aarch64::libegl-1.7.0-hd24410f_2
libfreetype conda-forge/linux-aarch64::libfreetype-2.14.1-h8af1aa0_0
libfreetype6 conda-forge/linux-aarch64::libfreetype6-2.14.1-hdae7a39_0
libgl conda-forge/linux-aarch64::libgl-1.7.0-hd24410f_2
libglib conda-forge/linux-aarch64::libglib-2.86.3-hf53f6bf_0
libglvnd conda-forge/linux-aarch64::libglvnd-1.7.0-hd24410f_2
libglx conda-forge/linux-aarch64::libglx-1.7.0-hd24410f_2
libiconv conda-forge/linux-aarch64::libiconv-1.18-h90929bb_2
libjpeg-turbo conda-forge/linux-aarch64::libjpeg-turbo-3.1.2-he30d5cf_0
libllvm21 conda-forge/linux-aarch64::libllvm21-21.1.8-hfd2ba90_0
libntlm conda-forge/linux-aarch64::libntlm-1.4-hf897c2e_1002
libopengl conda-forge/linux-aarch64::libopengl-1.7.0-hd24410f_2
libpciaccess conda-forge/linux-aarch64::libpciaccess-0.18-h86ecc28_0
libpng conda-forge/linux-aarch64::libpng-1.6.54-h1abf092_0
libpq conda-forge/linux-aarch64::libpq-18.1-hf8816c8_3
libtiff conda-forge/linux-aarch64::libtiff-4.7.1-hdb009f0_1
libvulkan-loader conda-forge/linux-aarch64::libvulkan-loader-1.4.328.1-h8b8848b_0
libwebp-base conda-forge/linux-aarch64::libwebp-base-1.6.0-ha2e29f5_0
libxcb conda-forge/linux-aarch64::libxcb-1.17.0-h262b8f6_0
libxkbcommon conda-forge/linux-aarch64::libxkbcommon-1.13.1-h3c6a4c8_0
libxml2 conda-forge/linux-aarch64::libxml2-2.15.1-h825857f_1
libxml2-16 conda-forge/linux-aarch64::libxml2-16-2.15.1-h79dcc73_1
libxslt conda-forge/linux-aarch64::libxslt-1.1.43-h6700d25_1
matplotlib conda-forge/linux-aarch64::matplotlib-3.10.8-py312h8025657_0
matplotlib-base conda-forge/linux-aarch64::matplotlib-base-3.10.8-py312h9d0c5ba_0
munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1
openjpeg conda-forge/linux-aarch64::openjpeg-2.5.4-h5da879a_0
openldap conda-forge/linux-aarch64::openldap-2.6.10-h30c48ee_0
packaging conda-forge/noarch::packaging-25.0-pyh29332c3_1
pcre2 conda-forge/linux-aarch64::pcre2-10.47-hf841c20_0
pillow conda-forge/linux-aarch64::pillow-12.1.0-py312h3b21937_0
pixman conda-forge/linux-aarch64::pixman-0.46.4-h7ac5ae9_1
pthread-stubs conda-forge/linux-aarch64::pthread-stubs-0.4-h86ecc28_1002
pyparsing conda-forge/noarch::pyparsing-3.3.1-pyhcf101f3_0
pyside6 conda-forge/linux-aarch64::pyside6-6.10.1-py312h4810df5_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
qhull conda-forge/linux-aarch64::qhull-2020.2-h70be974_5
qt6-main conda-forge/linux-aarch64::qt6-main-6.10.1-h5343e53_4
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
tornado conda-forge/linux-aarch64::tornado-6.5.3-py312hefbd42c_0
unicodedata2 conda-forge/linux-aarch64::unicodedata2-17.0.0-py312hcd1a082_1
wayland conda-forge/linux-aarch64::wayland-1.24.0-h4f8a99f_1
xcb-util conda-forge/linux-aarch64::xcb-util-0.4.1-hca56bd8_2
xcb-util-cursor conda-forge/linux-aarch64::xcb-util-cursor-0.1.6-he30d5cf_0
xcb-util-image conda-forge/linux-aarch64::xcb-util-image-0.4.0-h5c728e9_2
xcb-util-keysyms conda-forge/linux-aarch64::xcb-util-keysyms-0.4.1-h5c728e9_0
xcb-util-renderut~ conda-forge/linux-aarch64::xcb-util-renderutil-0.3.10-h5c728e9_0
xcb-util-wm conda-forge/linux-aarch64::xcb-util-wm-0.4.2-h5c728e9_0
xkeyboard-config conda-forge/linux-aarch64::xkeyboard-config-2.46-he30d5cf_0
xorg-libice conda-forge/linux-aarch64::xorg-libice-1.1.2-h86ecc28_0
xorg-libsm conda-forge/linux-aarch64::xorg-libsm-1.2.6-h0808dbd_0
xorg-libx11 conda-forge/linux-aarch64::xorg-libx11-1.8.12-hca56bd8_0
xorg-libxau conda-forge/linux-aarch64::xorg-libxau-1.0.12-he30d5cf_1
xorg-libxcomposite conda-forge/linux-aarch64::xorg-libxcomposite-0.4.6-h86ecc28_2
xorg-libxcursor conda-forge/linux-aarch64::xorg-libxcursor-1.2.3-h86ecc28_0
xorg-libxdamage conda-forge/linux-aarch64::xorg-libxdamage-1.1.6-h86ecc28_0
xorg-libxdmcp conda-forge/linux-aarch64::xorg-libxdmcp-1.1.5-he30d5cf_1
xorg-libxext conda-forge/linux-aarch64::xorg-libxext-1.3.6-h57736b2_0
xorg-libxfixes conda-forge/linux-aarch64::xorg-libxfixes-6.0.2-he30d5cf_0
xorg-libxi conda-forge/linux-aarch64::xorg-libxi-1.8.2-h57736b2_0
xorg-libxrandr conda-forge/linux-aarch64::xorg-libxrandr-1.5.4-h86ecc28_0
xorg-libxrender conda-forge/linux-aarch64::xorg-libxrender-0.9.12-h86ecc28_0
xorg-libxtst conda-forge/linux-aarch64::xorg-libxtst-1.2.5-h57736b2_3
xorg-libxxf86vm conda-forge/linux-aarch64::xorg-libxxf86vm-1.1.6-h86ecc28_0
zlib-ng conda-forge/linux-aarch64::zlib-ng-2.3.2-ha7cb516_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing dedalus with pip
Collecting http://github.com/dedalusproject/dedalus/zipball/master/
Downloading http://github.com/dedalusproject/dedalus/zipball/master/
- 24.5 MB 22.9 MB/s 0:00:01
Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: docopt in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (0.6.2)
Requirement already satisfied: h5py>=3.0.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (3.15.1)
Requirement already satisfied: matplotlib>=3.7.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (3.10.8)
Requirement already satisfied: mpi4py>=2.0.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (4.1.1)
Collecting numexpr (from dedalus==3.0.4)
Downloading numexpr-2.14.1-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl.metadata (9.0 kB)
Requirement already satisfied: numpy>=1.20.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (2.4.1)
Collecting py (from dedalus==3.0.4)
Downloading py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
Collecting pytest (from dedalus==3.0.4)
Downloading pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-benchmark (from dedalus==3.0.4)
Downloading pytest_benchmark-5.2.3-py3-none-any.whl.metadata (29 kB)
Collecting pytest-cov (from dedalus==3.0.4)
Downloading pytest_cov-7.0.0-py3-none-any.whl.metadata (31 kB)
Collecting pytest-xdist (from dedalus==3.0.4)
Downloading pytest_xdist-3.8.0-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: scipy>=1.4.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from dedalus==3.0.4) (1.17.0)
Collecting xarray (from dedalus==3.0.4)
Downloading xarray-2025.12.0-py3-none-any.whl.metadata (12 kB)
Requirement already satisfied: contourpy>=1.0.1 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (1.3.3)
Requirement already satisfied: cycler>=0.10 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (4.61.1)
Requirement already satisfied: kiwisolver>=1.3.1 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (1.4.9)
Requirement already satisfied: packaging>=20.0 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (25.0)
Requirement already satisfied: pillow>=8 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (12.1.0)
Requirement already satisfied: pyparsing>=3 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (3.3.1)
Requirement already satisfied: python-dateutil>=2.7 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from matplotlib>=3.7.0->dedalus==3.0.4) (2.9.0.post0)
Requirement already satisfied: six>=1.5 in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages (from python-dateutil>=2.7->matplotlib>=3.7.0->dedalus==3.0.4) (1.17.0)
Collecting iniconfig>=1.0.1 (from pytest->dedalus==3.0.4)
Downloading iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
Collecting pluggy<2,>=1.5 (from pytest->dedalus==3.0.4)
Downloading pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
Collecting pygments>=2.7.2 (from pytest->dedalus==3.0.4)
Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
Collecting py-cpuinfo (from pytest-benchmark->dedalus==3.0.4)
Downloading py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting coverage>=7.10.6 (from coverage[toml]>=7.10.6->pytest-cov->dedalus==3.0.4)
Downloading coverage-7.13.1-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl.metadata (8.5 kB)
Collecting execnet>=2.1 (from pytest-xdist->dedalus==3.0.4)
Downloading execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
Collecting pandas>=2.2 (from xarray->dedalus==3.0.4)
Downloading pandas-2.3.3-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl.metadata (91 kB)
Collecting pytz>=2020.1 (from pandas>=2.2->xarray->dedalus==3.0.4)
Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas>=2.2->xarray->dedalus==3.0.4)
Downloading tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
Downloading numexpr-2.14.1-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (452 kB)
Downloading py-1.11.0-py2.py3-none-any.whl (98 kB)
Downloading pytest-9.0.2-py3-none-any.whl (374 kB)
Downloading pluggy-1.6.0-py3-none-any.whl (20 kB)
Downloading iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
Downloading pygments-2.19.2-py3-none-any.whl (1.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 145.9 MB/s 0:00:00
Downloading pytest_benchmark-5.2.3-py3-none-any.whl (45 kB)
Downloading py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
Downloading pytest_cov-7.0.0-py3-none-any.whl (22 kB)
Downloading coverage-7.13.1-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (254 kB)
Downloading pytest_xdist-3.8.0-py3-none-any.whl (46 kB)
Downloading execnet-2.1.2-py3-none-any.whl (40 kB)
Downloading xarray-2025.12.0-py3-none-any.whl (1.4 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 17.5 MB/s 0:00:00
Downloading pandas-2.3.3-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (11.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.7/11.7 MB 218.6 MB/s 0:00:00
Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB)
Downloading tzdata-2025.3-py2.py3-none-any.whl (348 kB)
Building wheels for collected packages: dedalus
Building wheel for dedalus (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for dedalus (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [117 lines of output]
Configuration:
INCLUDE_MPI = True
INCLUDE_FFTW = True
FFTW_STATIC = False
CYTHON_PROFILE = False
Looking for mpi include path:
Found matching library in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib
Looking for mpi library path:
Found matching library in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib
Looking for fftw include path:
Found matching library in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib
Looking for fftw library path:
Found matching library in /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312/dedalus
copying dedalus/__main__.py -> build/lib.linux-aarch64-cpython-312/dedalus
copying dedalus/public.py -> build/lib.linux-aarch64-cpython-312/dedalus
copying dedalus/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus
creating build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/general.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/array.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/progress.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/exceptions.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/jacobi.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/clenshaw.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/cache.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/post.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/random_arrays.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/parallel.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/logging.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/config.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/parsing.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/dispatch.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
copying dedalus/tools/plot_op.py -> build/lib.linux-aarch64-cpython-312/dedalus/tools
creating build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/solvers.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/transforms.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/problems.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/system.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/domain.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/field.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/timesteppers.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/subsystems.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/distributor.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/coords.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/basis.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/arithmetic.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/future.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
copying dedalus/core/evaluator.py -> build/lib.linux-aarch64-cpython-312/dedalus/core
creating build/lib.linux-aarch64-cpython-312/dedalus/libraries
copying dedalus/libraries/matsolvers.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries
copying dedalus/libraries/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries
creating build/lib.linux-aarch64-cpython-312/dedalus/extras
copying dedalus/extras/flow_tools.py -> build/lib.linux-aarch64-cpython-312/dedalus/extras
copying dedalus/extras/plot_tools.py -> build/lib.linux-aarch64-cpython-312/dedalus/extras
copying dedalus/extras/quick_domains.py -> build/lib.linux-aarch64-cpython-312/dedalus/extras
copying dedalus/extras/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/extras
creating build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_evp.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_output.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_lbvp.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_grid_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_polar_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cfl.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_nlbvp.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_clenshaw.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_transforms.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_ivp.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/tests
creating build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/dedalus_sphere
creating build/lib.linux-aarch64-cpython-312/dedalus/libraries/fftw
copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-aarch64-cpython-312/dedalus/libraries/fftw
copying dedalus/dedalus.cfg -> build/lib.linux-aarch64-cpython-312/dedalus
copying dedalus/examples.tar.gz -> build/lib.linux-aarch64-cpython-312/dedalus
running build_ext
building 'dedalus.core.transposes' extension
creating build/temp.linux-aarch64-cpython-312/dedalus/core
mpicc -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/e6a/mk737.e6a/miniforge3/envs/dedalus3/include -fPIC -I/home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages/numpy/_core/include -I/home/e6a/mk737.e6a/miniforge3/envs/dedalus3/lib/python3.12/site-packages/mpi4py/include -I/home/e6a/mk737.e6a/miniforge3/envs/dedalus3/include -Idedalus/libraries/fftw/ -I/home/e6a/mk737.e6a/miniforge3/envs/dedalus3/include -I/home/e6a/mk737.e6a/miniforge3/envs/dedalus3/include/python3.12 -c dedalus/core/transposes.c -o build/temp.linux-aarch64-cpython-312/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp
error: command 'mpicc' failed: No such file or directory
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for dedalus
Failed to build dedalus
error: failed-wheel-build-for-install
× Failed to build installable wheels for some pyproject.toml based projects
╰─> dedalus
Disabled threading by default in the environment
To make your changes take effect please reactivate your environment
To make your changes take effect please reactivate your environment
Installation complete in conda environment 'dedalus3'
Regards.
Manohar Teja Kalluri
CGAFD, Univ of Exeter
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