Configuring deal.ii error - can't pinpoint what the issue is

[Phil H]

Hello there,

I'm a new user trying to ultimately install ASPECT, currently setting up deal.ii.

I've managed to almost get deal.ii to configure, but errors have occurred. I've tried to figure out what errors are occurring, but can't seem to pinpoint the issue. Could anyone point me in the right direction? 

 I'm using UBUNTU 14, and hopefully have met the requirements for CMAKE and GFORTRAN in order to get deal.ii to work. I've attached the detailed log and CMake logs.

Thanks in advance, and sorry if this is a relatively simple fix.

Best,

Phil

[Wolfgang Bangerth]

Phil,

> I'm a new user trying to ultimately install ASPECT, currently setting up deal.ii.
>
> I've managed to almost get deal.ii to configure, but errors have occurred.

Which errors specifically do you see? detailed.log doesn't show anything
obvious, but I may also be looking in the wrong place.

Best
W.


--
------------------------------------------------------------------------
Wolfgang Bangerth email: bang...@colostate.edu
www: http://www.math.colostate.edu/~bangerth/

[Uwe Köcher]

Dear Phil,

to compile and use aspect, you need more dependencies (like Trilinos, p4est, MPI) for the deal.II library.

To simplify your life, you can use the automated build script as announced on https://www.dealii.org/download.html

or the direct link:

https://github.com/dealii/candi

It will help you to find and install the necessary system dependencies and it is preconfigured to be used with

aspect.

After the candi-installation is finished, you can do

  source <path/for/install>/configuration/deal.II-v8.4.2

to set the DEAL_II_DIR variable.

I've checked with the current version (v8.4.2), the installation of aspect should be as

easy as: cmake . , make

Best

  Uwe

[Phil H]

Hi Wolfgang,


Here is the full compilation, with the cmake. As I say, I can't see immediately where the issue is.


CC=mpicc CXX=mpicxx CFLAGS="-fPIC -O2" cmake -DCMAKE_INSTALL_PREFIX=/local/earthsci/klmz32/Documents/LAB/dealii -DDEAL_II_WITH_TRILINOS=ON -DTRILINOS_DIR=/local/earthsci/klmz32/Documents/LAB/trilinos -DP4EST_DIR=/local/earthsci/klmz32/Documents/LAB/sources/p4est -DDEAL_II_WITH_P4EST=ON -DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_HDF5=ON  -DHDF5_DIR=/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1 ..
-- This is CMake 3.4.1
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_external_macros.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_register_feature.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_if_links.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_test.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_to_string.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_item_matches.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_replace_flag.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_language_optional.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_purge_feature.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_clear_cmake_required.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_find_package.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_library.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_dependencies.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_path.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_reset_cmake_required.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_if_supported.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_check_mpi_interface.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_switch_library_preference.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_push_cmake_required.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_filter_system_libraries.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_set_if_empty.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_find_system_library.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_library.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_remove_duplicates.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_file.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_expand_instantiations.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_configure_feature.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_strip_flag.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_verbose_include.cmake
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_add_flags.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_cached_variables.cmake
-- The CXX compiler identification is GNU 4.8.5
-- The C compiler identification is GNU 4.9.4
-- Check for working CXX compiler: /usr/bin/mpicxx
-- Check for working CXX compiler: /usr/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/mpicc
-- Check for working C compiler: /usr/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 4.8.5
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_deal_ii.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_compiler_flags.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_compiler_flags_gnu.cmake
-- Performing Test DEAL_II_HAVE_FLAG_pedantic
-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
-- Performing Test DEAL_II_HAVE_FLAG_fpic
-- Performing Test DEAL_II_HAVE_FLAG_fpic - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wall
-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wextra
-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
-- Performing Test DEAL_II_HAVE_FLAG_Og
-- Performing Test DEAL_II_HAVE_FLAG_Og - Success
-- Performing Test DEAL_II_HAVE_FLAG_ggdb
-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/bundled/setup_bundled.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_cpu_features.cmake
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test DEAL_II_HAVE_SSE2
-- Performing Test DEAL_II_HAVE_SSE2 - Success
-- Performing Test DEAL_II_HAVE_AVX
-- Performing Test DEAL_II_HAVE_AVX - Failed
-- Performing Test DEAL_II_HAVE_AVX512
-- Performing Test DEAL_II_HAVE_AVX512 - Failed
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Failed
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_cxx_features.cmake
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y - Success
-- Using C++ version flag "-std=c++1y"
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Failed
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11 - Success
-- Using C++ version flag "-std=c++11"
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY - Success
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR - Success
-- Performing Test DEAL_II_HAVE_CXX11_THREAD
-- Performing Test DEAL_II_HAVE_CXX11_THREAD - Success
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX - Success
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- DEAL_II_WITH_CXX11 successfully set up
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Failed
-- Performing Test DEAL_II_HAVE_STD_ISNAN
-- Performing Test DEAL_II_HAVE_STD_ISNAN - Success
-- Performing Test DEAL_II_HAVE_ISNAN
-- Performing Test DEAL_II_HAVE_ISNAN - Success
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN - Failed
-- Performing Test DEAL_II_HAVE_ISFINITE
-- Performing Test DEAL_II_HAVE_ISFINITE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include sys/time.h
-- Looking for C++ include sys/time.h - found
-- Looking for C++ include sys/times.h
-- Looking for C++ include sys/times.h - found
-- Looking for times
-- Looking for times - found
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Looking for jn
-- Looking for jn - found
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_TYPE_QUALIFIER_BUG
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK - Success
-- Test successful, do not define DEAL_II_BOOST_BIND_COMPILER_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK - Success
-- Test successful, do not define DEAL_II_ICC_SFINAE_BUG
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_03_generator_bugs.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_bzip2.cmake
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
--   BZIP2_VERSION: 1.0.6
--   BZIP2_LIBRARIES: /usr/lib/x86_64-linux-gnu/libbz2.so
--   BZIP2_INCLUDE_DIRS: /usr/include
-- Found BZIP2
-- DEAL_II_WITH_BZIP2 successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_lapack.cmake
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE 
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Success
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
--   LAPACK_LIBRARIES: /usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/libblas.so;gfortran;m;quadmath;m;c
--   LAPACK_LINKER_FLAGS:
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Failed
-- Could not find a sufficient BLAS/LAPACK installation: BLAS/LAPACK symbol check failed! Consult CMakeFiles/CMakeError.log for further information.
-- DEAL_II_WITH_LAPACK has unmet external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_mpi.cmake
-- Found MPI_C: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so 
-- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so 
-- Unable to determine MPI from MPI driver /usr/bin/gfortran
-- Could NOT find MPI_Fortran (missing:  MPI_Fortran_LIBRARIES MPI_Fortran_INCLUDE_PATH)
-- Performing Test MPI_HAVE_MPI_SEEK_SET
-- Performing Test MPI_HAVE_MPI_SEEK_SET - Success
-- Found MPI_MPI_H
--   MPI_VERSION: 2.1
--   MPI_LIBRARIES: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
--   MPI_INCLUDE_DIRS: /usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
--   MPI_USER_INCLUDE_DIRS: /usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
--   MPI_CXX_FLAGS:
--   MPI_LINKER_FLAGS:
-- Found MPI
-- DEAL_II_WITH_MPI successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_threads.cmake
-- TBB_LIBRARY not found! Call:
--     FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 lib)
-- TBB_DEBUG_LIBRARY not found! Call:
--     FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib lib64 lib)
-- TBB_INCLUDE_DIR not found! Call:
--     FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES include include/tbb tbb)
--   TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
--   TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to NOTFOUND ***
--   TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find TBB
-- DEAL_II_WITH_THREADS has unmet external dependencies.
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses - Success
-- DEAL_II_WITH_THREADS successfully set up with bundled packages.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
--   ZLIB_VERSION: 1.2.8
--   ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so
--   ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_metis.cmake
-- METIS_LIBRARY not found! Call:
--     FIND_LIBRARY(METIS_LIBRARY NAMES metis HINTS PATH_SUFFIXES lib lib64 lib build/Linux-x86_64/libmetis)
-- PARMETIS_LIBRARY not found! Call:
--     FIND_LIBRARY(PARMETIS_LIBRARY NAMES parmetis HINTS NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- METIS_INCLUDE_DIR not found! Call:
--     FIND_PATH(METIS_INCLUDE_DIR metis.h HINTS PATH_SUFFIXES metis include/metis include)
--   METIS_LIBRARIES: *** Required variable "METIS_LIBRARY" set to NOTFOUND ***
--   METIS_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to NOTFOUND ***
--   METIS_USER_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find METIS
-- DEAL_II_WITH_METIS has unmet external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_trilinos.cmake
CMake Error at /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/STK/STKConfig.cmake:144 (INCLUDE):
  include could not find load file:

    /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/STK/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
  /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/TrilinosCouplingsConfig.cmake:146 (INCLUDE)
  /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146 (INCLUDE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
  build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
  cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
  cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
  cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:119 (VERBOSE_INCLUDE)


CMake Error at /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/TrilinosCouplingsConfig.cmake:148 (INCLUDE):
  include could not find load file:

    /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
  /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146 (INCLUDE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
  build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
  cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
  cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
  cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:119 (VERBOSE_INCLUDE)


CMake Error at /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/PyTrilinos/PyTrilinosConfig.cmake:146 (INCLUDE):
  include could not find load file:

    /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/PyTrilinos/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
  /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146 (INCLUDE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
  build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
  cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
  cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
  cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:119 (VERBOSE_INCLUDE)


CMake Warning at /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:156 (MESSAGE):
  Component "STKDoc_tests" NOT found.
Call Stack (most recent call first):
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
  build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
  cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
  cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
  cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:119 (VERBOSE_INCLUDE)


CMake Error at /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:238 (include):
  include could not find load file:

    /local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
  cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
  cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
  build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
  cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
  cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
  cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:119 (VERBOSE_INCLUDE)


-- Found EPETRA_CONFIG_H
-- Found SACADO_CONFIG_H
-- Found SACADO_CMATH_HPP
-- Performing Test TRILINOS_SUPPORTS_CPP11
-- Performing Test TRILINOS_SUPPORTS_CPP11 - Success
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND - Success
-- Found TRILINOS_LIBRARY_pike-blackbox
-- Found TRILINOS_LIBRARY_trilinoscouplings
-- Found TRILINOS_LIBRARY_msqutil
-- Found TRILINOS_LIBRARY_mesquite
-- Found TRILINOS_LIBRARY_pytrilinos
-- Found TRILINOS_LIBRARY_ctrilinos
-- Found TRILINOS_LIBRARY_sundancePdeopt
-- Found TRILINOS_LIBRARY_sundanceStdFwk
-- Found TRILINOS_LIBRARY_sundanceStdMesh
-- Found TRILINOS_LIBRARY_sundanceCore
-- Found TRILINOS_LIBRARY_sundanceInterop
-- Found TRILINOS_LIBRARY_sundanceUtils
-- Found TRILINOS_LIBRARY_sundancePlaya
-- Found TRILINOS_LIBRARY_piro
-- Found TRILINOS_LIBRARY_rol
-- Found TRILINOS_LIBRARY_stokhos_muelu
-- Found TRILINOS_LIBRARY_stokhos_ifpack2
-- Found TRILINOS_LIBRARY_stokhos_amesos2
-- Found TRILINOS_LIBRARY_stokhos_tpetra
-- Found TRILINOS_LIBRARY_stokhos_sacado
-- Found TRILINOS_LIBRARY_stokhos
-- Found TRILINOS_LIBRARY_moochothyra
-- Found TRILINOS_LIBRARY_moocho
-- Found TRILINOS_LIBRARY_rythmos
-- Found TRILINOS_LIBRARY_muelu-adapters
-- Found TRILINOS_LIBRARY_muelu-interface
-- Found TRILINOS_LIBRARY_muelu
-- Found TRILINOS_LIBRARY_moertel
-- Found TRILINOS_LIBRARY_locathyra
-- Found TRILINOS_LIBRARY_locaepetra
-- Found TRILINOS_LIBRARY_localapack
-- Found TRILINOS_LIBRARY_loca
-- Found TRILINOS_LIBRARY_noxepetra
-- Found TRILINOS_LIBRARY_noxlapack
-- Found TRILINOS_LIBRARY_nox
-- Found TRILINOS_LIBRARY_phalanx
-- Found TRILINOS_LIBRARY_stk_expreval
-- Found TRILINOS_LIBRARY_stk_mesh_fixtures
-- Found TRILINOS_LIBRARY_stk_search_util_base
-- Found TRILINOS_LIBRARY_stk_search
-- Found TRILINOS_LIBRARY_stk_unit_test_utils
-- Found TRILINOS_LIBRARY_stk_io_util
-- Found TRILINOS_LIBRARY_stk_io
-- Found TRILINOS_LIBRARY_stk_mesh_base
-- Found TRILINOS_LIBRARY_stk_topology
-- Found TRILINOS_LIBRARY_stk_util_use_cases
-- Found TRILINOS_LIBRARY_stk_util_registry
-- Found TRILINOS_LIBRARY_stk_util_parallel
-- Found TRILINOS_LIBRARY_stk_util_diag
-- Found TRILINOS_LIBRARY_stk_util_env
-- Found TRILINOS_LIBRARY_stk_util_util
-- Found TRILINOS_LIBRARY_stkclassic_search_util
-- Found TRILINOS_LIBRARY_stkclassic_search
-- Found TRILINOS_LIBRARY_stkclassic_rebalance_utils
-- Found TRILINOS_LIBRARY_stkclassic_rebalance
-- Found TRILINOS_LIBRARY_stkclassic_linsys
-- Found TRILINOS_LIBRARY_stkclassic_io_util
-- Found TRILINOS_LIBRARY_stkclassic_io
-- Found TRILINOS_LIBRARY_stkclassic_expreval
-- Found TRILINOS_LIBRARY_stkclassic_algsup
-- Found TRILINOS_LIBRARY_stkclassic_mesh_fem
-- Found TRILINOS_LIBRARY_stkclassic_mesh_base
-- Found TRILINOS_LIBRARY_stkclassic_util_unit_test_support
-- Found TRILINOS_LIBRARY_stkclassic_util_parallel
-- Found TRILINOS_LIBRARY_stkclassic_util_diag
-- Found TRILINOS_LIBRARY_stkclassic_util_env
-- Found TRILINOS_LIBRARY_stkclassic_util_util
-- Found TRILINOS_LIBRARY_intrepid
-- Found TRILINOS_LIBRARY_teko
-- Found TRILINOS_LIBRARY_fei_trilinos
-- Found TRILINOS_LIBRARY_fei_base
-- Found TRILINOS_LIBRARY_stratimikos
-- Found TRILINOS_LIBRARY_stratimikosbelos
-- Found TRILINOS_LIBRARY_stratimikosaztecoo
-- Found TRILINOS_LIBRARY_stratimikosamesos
-- Found TRILINOS_LIBRARY_stratimikosml
-- Found TRILINOS_LIBRARY_stratimikosifpack
-- Found TRILINOS_LIBRARY_ifpack2-adapters
-- Found TRILINOS_LIBRARY_ifpack2
-- Found TRILINOS_LIBRARY_anasazitpetra
-- Found TRILINOS_LIBRARY_ModeLaplace
-- Found TRILINOS_LIBRARY_anasaziepetra
-- Found TRILINOS_LIBRARY_anasazi
-- Found TRILINOS_LIBRARY_komplex
-- Found TRILINOS_LIBRARY_svdi_cgi
-- Found TRILINOS_LIBRARY_svdi_cdr
-- Found TRILINOS_LIBRARY_suplib_cpp
-- Found TRILINOS_LIBRARY_suplib_c
-- Found TRILINOS_LIBRARY_supes
-- Found TRILINOS_LIBRARY_aprepro_lib
-- Found TRILINOS_LIBRARY_chaco
-- Found TRILINOS_LIBRARY_io_info_lib
-- Found TRILINOS_LIBRARY_Ionit
-- Found TRILINOS_LIBRARY_Iotr
-- Found TRILINOS_LIBRARY_Iohb
-- Found TRILINOS_LIBRARY_Iogn
-- Found TRILINOS_LIBRARY_Iopg
-- Found TRILINOS_LIBRARY_Ioss
-- Found TRILINOS_LIBRARY_amesos2
-- Found TRILINOS_LIBRARY_shylu
-- Found TRILINOS_LIBRARY_belostpetra
-- Found TRILINOS_LIBRARY_belosepetra
-- Found TRILINOS_LIBRARY_belos
-- Found TRILINOS_LIBRARY_ml
-- Found TRILINOS_LIBRARY_ifpack
-- Found TRILINOS_LIBRARY_zoltan2
-- Found TRILINOS_LIBRARY_pamgen_extras
-- Found TRILINOS_LIBRARY_pamgen
-- Found TRILINOS_LIBRARY_amesos
-- Found TRILINOS_LIBRARY_galeri-xpetra
-- Found TRILINOS_LIBRARY_galeri-epetra
-- Found TRILINOS_LIBRARY_aztecoo
-- Found TRILINOS_LIBRARY_dpliris
-- Found TRILINOS_LIBRARY_isorropia
-- Found TRILINOS_LIBRARY_optipack
-- Found TRILINOS_LIBRARY_xpetra-sup
-- Found TRILINOS_LIBRARY_xpetra
-- Found TRILINOS_LIBRARY_thyratpetra
-- Found TRILINOS_LIBRARY_thyraepetraext
-- Found TRILINOS_LIBRARY_thyraepetra
-- Found TRILINOS_LIBRARY_thyracore
-- Found TRILINOS_LIBRARY_epetraext
-- Found TRILINOS_LIBRARY_tpetraext
-- Found TRILINOS_LIBRARY_tpetrainout
-- Found TRILINOS_LIBRARY_tpetra
-- Found TRILINOS_LIBRARY_kokkostsqr
-- Found TRILINOS_LIBRARY_tpetrakernels
-- Found TRILINOS_LIBRARY_tpetraclassiclinalg
-- Found TRILINOS_LIBRARY_tpetraclassicnodeapi
-- Found TRILINOS_LIBRARY_tpetraclassic
-- Found TRILINOS_LIBRARY_triutils
-- Found TRILINOS_LIBRARY_globipack
-- Found TRILINOS_LIBRARY_shards
-- Found TRILINOS_LIBRARY_zoltan
-- Found TRILINOS_LIBRARY_epetra
-- Found TRILINOS_LIBRARY_sacado
-- Found TRILINOS_LIBRARY_rtop
-- Found TRILINOS_LIBRARY_teuchoskokkoscomm
-- Found TRILINOS_LIBRARY_teuchoskokkoscompat
-- Found TRILINOS_LIBRARY_teuchosremainder
-- Found TRILINOS_LIBRARY_teuchosnumerics
-- Found TRILINOS_LIBRARY_teuchoscomm
-- Found TRILINOS_LIBRARY_teuchosparameterlist
-- Found TRILINOS_LIBRARY_teuchoscore
-- Found TRILINOS_LIBRARY_kokkosalgorithms
-- Found TRILINOS_LIBRARY_kokkoscontainers
-- Found TRILINOS_LIBRARY_kokkoscore
-- Found TRILINOS_LIBRARY_tpi
-- Found TRILINOS_LIBRARY_gtest
--   TRILINOS_VERSION: 12.10.1
--   TRILINOS_LIBRARIES: /local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpike-blackbox.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtrilinoscouplings.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmsqutil.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmesquite.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpytrilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libctrilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundancePdeopt.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceStdFwk.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceStdMesh.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceCore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceInterop.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceUtils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundancePlaya.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpiro.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librol.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_muelu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_ifpack2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_amesos2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_tpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_sacado.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoochothyra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoocho.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librythmos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu-adapters.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu-interface.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoertel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocathyra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocaepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocalapack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libloca.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnoxepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnoxlapack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnox.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libphalanx.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_expreval.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_mesh_fixtures.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_search_util_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_search.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_unit_test_utils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_io_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_io.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_mesh_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_topology.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_use_cases.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_registry.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_parallel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_diag.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_env.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_search_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_search.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_rebalance_utils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_rebalance.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_linsys.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_io_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_io.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_expreval.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_algsup.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_mesh_fem.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_mesh_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_unit_test_support.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_parallel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_diag.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_env.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libintrepid.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteko.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libfei_trilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libfei_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosbelos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosaztecoo.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosamesos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosml.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosifpack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack2-adapters.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasazitpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libModeLaplace.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasaziepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasazi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkomplex.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsvdi_cgi.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsvdi_cdr.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsuplib_cpp.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsuplib_c.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsupes.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libaprepro_lib.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libchaco.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libio_info_lib.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIonit.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIotr.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIohb.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIogn.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIopg.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIoss.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libamesos2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libshylu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelostpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelosepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libml.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libzoltan2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpamgen_extras.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpamgen.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libamesos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgaleri-xpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgaleri-epetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libaztecoo.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libdpliris.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libisorropia.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liboptipack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libxpetra-sup.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libxpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyratpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyraepetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyraepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyracore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libepetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetrainout.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkostsqr.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetrakernels.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassiclinalg.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassicnodeapi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassic.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtriutils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libglobipack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libshards.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libzoltan.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsacado.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librtop.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoskokkoscomm.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoskokkoscompat.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosremainder.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosnumerics.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoscomm.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosparameterlist.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoscore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkosalgorithms.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkoscontainers.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkoscore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgtest.so;/usr/lib/x86_64-linux-gnu/libboost_program_options.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
--   TRILINOS_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/trilinos/include;/usr/include
--   TRILINOS_USER_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/trilinos/include;/usr/include
-- Found TRILINOS
-- Check whether the found trilinos package contains all required modules:
-- Found Amesos
-- Found Epetra
-- Found Ifpack
-- Found AztecOO
-- Found Sacado
-- Found Teuchos
-- Found ML
-- Found MueLu
-- DEAL_II_WITH_TRILINOS successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_umfpack.cmake
-- DEAL_II_WITH_UMFPACK has unmet configuration requirements: DEAL_II_WITH_LAPACK has to be set to "ON".
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_3_petsc.cmake
-- PETSC_LIBRARY not found! Call:
--     FIND_LIBRARY(PETSC_LIBRARY NAMES petsc HINTS / PATH_SUFFIXES lib lib64 lib)
-- PETSC_INCLUDE_DIR_ARCH not found! Call:
--     FIND_PATH(PETSC_INCLUDE_DIR_ARCH petscconf.h HINTS / PATH_SUFFIXES petsc include include/petsc)
-- PETSC_INCLUDE_DIR_COMMON not found! Call:
--     FIND_PATH(PETSC_INCLUDE_DIR_COMMON petscversion.h HINTS / PATH_SUFFIXES petsc include include/petsc)
-- PETSC_PETSCVARIABLES not found! Call:
--     FIND_FILE(PETSC_PETSCVARIABLES NAMES petscvariables HINTS / PATH_SUFFIXES conf)
--   PETSC_LIBRARIES: *** Required variable "PETSC_LIBRARY" set to NOTFOUND ***
--   PETSC_INCLUDE_DIRS: *** Required variable "PETSC_INCLUDE_DIR_COMMON" set to NOTFOUND ***
--   PETSC_USER_INCLUDE_DIRS: *** Required variable "PETSC_INCLUDE_DIR_COMMON" set to NOTFOUND ***
-- Could NOT find PETSC
-- DEAL_II_WITH_PETSC has unmet external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_arpack.cmake
-- DEAL_II_WITH_ARPACK has unmet configuration requirements: DEAL_II_WITH_LAPACK has to be set to "ON".
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_boost.cmake
-- Boost version: 1.54.0
-- Found the following Boost libraries:
--   iostreams
--   serialization
--   system
--   thread
--   BOOST_VERSION: 1.54.0
--   BOOST_LIBRARIES: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so
--   BOOST_INCLUDE_DIRS: /usr/include
--   BOOST_USER_INCLUDE_DIRS: /usr/include
-- Found BOOST
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success
-- DEAL_II_WITH_BOOST successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_hdf5.cmake
-- Found HDF5_INCLUDE_DIR
-- Found HDF5_LIBRARY
-- Found HDF5_HL_LIBRARY
-- Found HDF5_PUBCONF
--   HDF5_LIBRARIES: /local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/lib/libhdf5_hl.so;/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/lib/libhdf5.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
--   HDF5_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/include
--   HDF5_USER_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/include
-- Found HDF5
-- DEAL_II_WITH_HDF5 successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_muparser.cmake
-- MUPARSER_LIBRARY not found! Call:
--     FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS PATH_SUFFIXES lib lib64 lib)
-- MUPARSER_INCLUDE_DIR not found! Call:
--     FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES include)
--   MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to NOTFOUND ***
--   MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find MUPARSER
-- DEAL_II_WITH_MUPARSER has unmet external dependencies.
-- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_netcdf.cmake
-- NETCDF_INCLUDE_DIR not found! Call:
--     FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf include)
-- NETCDF_CPLUSPLUS_LIBRARY not found! Call:
--     FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp HINTS PATH_SUFFIXES lib lib64 lib)
-- NETCDF_C_LIBRARY not found! Call:
--     FIND_LIBRARY(NETCDF_C_LIBRARY NAMES netcdf HINTS PATH_SUFFIXES lib lib64 lib)
--   NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set to NOTFOUND ***
--   NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find NETCDF
-- DEAL_II_WITH_NETCDF has unmet external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_opencascade.cmake
-- OPENCASCADE_INCLUDE_DIR not found! Call:
--     FIND_PATH(OPENCASCADE_INCLUDE_DIR Standard_Version.hxx HINTS PATH_SUFFIXES include include/oce inc)
-- OPENCASCADE_TKBO not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKBO NAMES TKBO HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBool not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKBool NAMES TKBool HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBRep not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKBRep NAMES TKBRep HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKernel not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKernel NAMES TKernel HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFeat not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKFeat NAMES TKFeat HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFillet not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKFillet NAMES TKFillet HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG2d not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKG2d NAMES TKG2d HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG3d not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKG3d NAMES TKG3d HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomAlgo not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKGeomAlgo NAMES TKGeomAlgo HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomBase not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKGeomBase NAMES TKGeomBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKHLR not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKHLR NAMES TKHLR HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKIGES not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKIGES NAMES TKIGES HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMath not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKMath NAMES TKMath HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMesh not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKMesh NAMES TKMesh HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKOffset not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKOffset NAMES TKOffset HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKPrim not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKPrim NAMES TKPrim HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKShHealing not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKShHealing NAMES TKShHealing HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEP not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKSTEP NAMES TKSTEP HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPAttr not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKSTEPAttr NAMES TKSTEPAttr HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPBase not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKSTEPBase NAMES TKSTEPBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTL not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKSTL NAMES TKSTL HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKTopAlgo not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKTopAlgo NAMES TKTopAlgo HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKXSBase not found! Call:
--     FIND_LIBRARY(OPENCASCADE_TKXSBase NAMES TKXSBase HINTS PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
--   OPENCASCADE_LIBRARIES: *** Required variable "OPENCASCADE_TKBO" set to NOTFOUND ***
--   OPENCASCADE_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
--   OPENCASCADE_USER_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find OPENCASCADE
-- DEAL_II_WITH_OPENCASCADE has unmet external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_p4est.cmake
-- Found SC_INCLUDE_DIR
-- Found P4EST_LIBRARY_OPTIMIZED
-- Found SC_LIBRARY_OPTIMIZED
-- Found P4EST_LIBRARY_DEBUG
-- Found SC_LIBRARY_DEBUG
-- Found P4EST_INCLUDE_DIR
--   P4EST_VERSION: 1.1
--   P4EST_LIBRARIES: optimized;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/lib/libp4est.so;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/lib/libsc.so;debug;/local/earthsci/klmz32/Documents/LAB/sources/p4est/DEBUG/lib/libp4est.so;/local/earthsci/klmz32/Documents/LAB/sources/p4est/DEBUG/lib/libsc.so;general;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
--   P4EST_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include
--   P4EST_USER_INCLUDE_DIRS: /local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include
-- Found P4EST
-- DEAL_II_WITH_P4EST successfully set up with external dependencies.
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_slepc.cmake
-- DEAL_II_WITH_SLEPC has unmet configuration requirements: DEAL_II_WITH_PETSC has to be set to "ON".
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_cpack.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_custom_targets.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_finalize.cmake
--
-- Include /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_write_config.cmake
-- Query git repository information.
-- Found Git: /usr/bin/git (found version "1.9.1")
--
-- Configuring done. Proceed to target definitions now.
-- Setting up bundled features
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types - Failed
-- Setting up bundled features - Done
-- Setting up library
-- Setting up library - Done
-- Setting up project configuration
-- Setting up project configuration - Done
-- Setting up examples
-- Setting up examples - Done
-- Setting up quick_tests in DEBUG mode
-- Setting up quick_tests in DEBUG mode - Done
-- Setting up testsuite
-- Setting up testsuite - Done
###
#
#  deal.II configuration:
#        CMAKE_BUILD_TYPE:       DebugRelease
#        BUILD_SHARED_LIBS:      ON
#        CMAKE_INSTALL_PREFIX:   /local/earthsci/klmz32/Documents/LAB/dealii
#        CMAKE_SOURCE_DIR:       /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1
#                                (version 8.4.1)
#        CMAKE_BINARY_DIR:       /local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build
#        CMAKE_CXX_COMPILER:     GNU 4.8.5 on platform Linux x86_64
#                                /usr/bin/mpicxx
#
#  Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):
#      ( DEAL_II_WITH_64BIT_INDICES = OFF )
#      ( DEAL_II_WITH_ARPACK = OFF )
#        DEAL_II_WITH_BOOST set up with external dependencies
#        DEAL_II_WITH_BZIP2 set up with external dependencies
#        DEAL_II_WITH_CXX11 = ON
#      ( DEAL_II_WITH_CXX14 = OFF )
#        DEAL_II_WITH_HDF5 set up with external dependencies
#      ( DEAL_II_WITH_LAPACK = OFF )
#      ( DEAL_II_WITH_METIS = OFF )
#        DEAL_II_WITH_MPI set up with external dependencies
#        DEAL_II_WITH_MUPARSER set up with bundled packages
#      ( DEAL_II_WITH_NETCDF = OFF )
#      ( DEAL_II_WITH_OPENCASCADE = OFF )
#        DEAL_II_WITH_P4EST set up with external dependencies
#      ( DEAL_II_WITH_PETSC = OFF )
#      ( DEAL_II_WITH_SLEPC = OFF )
#        DEAL_II_WITH_THREADS set up with bundled packages
#        DEAL_II_WITH_TRILINOS set up with external dependencies
#      ( DEAL_II_WITH_UMFPACK = OFF )
#        DEAL_II_WITH_ZLIB set up with external dependencies
#
#  Component configuration:
#      ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
#        DEAL_II_COMPONENT_EXAMPLES
#      ( DEAL_II_COMPONENT_PACKAGE = OFF )
#      ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
#  Detailed information (compiler flags, feature configuration) can be found in detailed.log
#
#  Run  $ make info  to print a help message with a list of top level targets
#
###
-- Configuring incomplete, errors occurred!
See also "/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build/CMakeFiles/CMakeOutput.log".
See also "/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build/CMakeFiles/CMakeError.log".

[Wolfgang Bangerth]

On 03/01/2017 05:38 AM, Phil H wrote:
>
> Here is the full compilation, with the cmake. As I say, I can't see
> immediately where the issue is.

Phil -- I suspect it has to do with the errors during Trilinos configuration,
where it tries to find some load file but can't find it.

That said, do you end up with a Makefile file in your build directory? If so,
I suspect you can just ignore the error.

[Phil H]

W, I don't end up with a Makefile file in dealii build. Just -

-rw-r--r--  1 klmz32 dgl     71 Mar  1 12:34 revision.log
-rw-r--r--  1 klmz32 dgl   1985 Mar  1 12:34 summary.log
-rw-r--r--  1 klmz32 dgl  16936 Mar  1 12:34 detailed.log
drwxr-xr-x  3 klmz32 dgl   4096 Mar  1 12:34 share
drwxr-xr-x  4 klmz32 dgl   4096 Mar  1 12:34 include
drwxr-xr-x  3 klmz32 dgl   4096 Mar  1 12:34 doc
drwxr-xr-x  5 klmz32 dgl   4096 Mar  1 12:34 bundled
drwxr-xr-x 17 klmz32 dgl   4096 Mar  1 12:34 source
drwxr-xr-x  3 klmz32 dgl   4096 Mar  1 12:34 lib
drwxr-xr-x  4 klmz32 dgl   4096 Mar  1 12:34 cmake
drwxr-xr-x  3 klmz32 dgl   4096 Mar  1 12:34 contrib
drwxr-xr-x  3 klmz32 dgl   4096 Mar  1 12:34 examples
drwxr-xr-x  4 klmz32 dgl   4096 Mar  1 12:34 tests
-rw-r--r--  1 klmz32 dgl     14 Mar  1 12:34 CTestTestfile.cmake
drwxr-xr-x  6 klmz32 dgl   4096 Mar  1 12:34 CMakeFiles
-rw-r--r--  1 klmz32 dgl 112883 Mar  1 12:34 CMakeCache.txt

Hmmm. So Trilinos may be the issue. Would that explain why LAPACK is set to OFF as well? Do I have to specifically ask for LAPACK to be turned on?

[Wolfgang Bangerth]

On 03/01/2017 06:09 AM, Phil H wrote:
>
> Hmmm. So Trilinos may be the issue. Would that explain why LAPACK is set to
> OFF as well? Do I have to specifically ask for LAPACK to be turned on?

I think it is an issue with the installation of Trilinos -- some files that
are supposed to be there are not there.

I would suggest to go the route that Uwe suggested: use candi.

[Phil H]

Great, thanks! I have started Candi now - thanks to yourself and Uwe.

[Phil H]

Hi Uwe,

Thanks for the suggestion of Candi. At the moment, there is still an issue which I think was causing the problems I had with the manual build.

During .candi.sh:

-- Performing Test LAPACK_SYMBOL_CHECK - Failed
-- Could not find a sufficient BLAS/LAPACK installation: BLAS/LAPACK symbol check failed! Consult CMakeFiles/CMakeError.log for further information.
-- DEAL_II_WITH_LAPACK has unmet external dependencies.

CMake Error at cmake/macros/macro_configure_feature.cmake:121 (MESSAGE):
 

  Could not find the lapack library!

  Could not find a sufficient BLAS/LAPACK installation:

  BLAS/LAPACK symbol check failed! This usually means that your BLAS/LAPACK
  installation is incomplete or the link line is broken. 


I will try and re-install:

libblas-dev liblapack-dev

Cheers,

Phil

[Phil H]

Ah, this seems to be the issue -

/usr/bin/mpicc -DLAPACK_SYMBOL_CHECK -pthread CMakeFiles/cmTC_96781.dir/src.c.o -o cmTC_96781 -rdynamic /usr/lib/liblapack.so /usr/lib/libblas.so -lmpi_f90 -lmpi_f77 -lmpi -ldl -lhwloc -lgfortran -lquadmath -lm -lpthread -lc

/usr/bin/ld: cannot find -lgfortran

collect2: error: ld returned 1 exit status

make[1]: *** [cmTC_96781] Error 1

Will explore further.

[Phil H]

Hi all,

Looks promising now - the version of gcc did not have a gfortran lib installed. During the manual build I had to get a higher version of gcc available from apt-get on ubuntu 14.04. This then caused a number of problems further down the line.

Candi looks like an excellent package. Thanks for the help.

[Uwe Köcher]

The list of system depencies shown up by candi assumes, that you do not have other compilers installed.

(usually we test this on freshly installed (virtual) machines).

As far as I know, the default compiler suite (gcc, gfortran) is recent enough for everything we need.

But what we really need, is an openmpi or mpich top level compiler for gcc, clang or intel compiler.

(because of the parallel approach for aspect).

If openmpi or mpich is correctly installed, candi picks up automatically the correct compilers (mpicc, mpicxx, mpifXX)

without any configuration.

I'm working only on Fedora/CentOS/RedHat systems. There it is easy to have self-compiled newer or older

compilers. But other deal.II developers are working on ubuntu and using candi too.

If your problem is solved, please mark the best answer.

Best

  Uwe

[Phil H]

Hi Uwe, 

I obtained an aspect executable, but it failed the tests. I'm going to see where the issue lies and will get back to you. 

Phil

[Phil H]

Hi all, 

I've finally managed to install ASPECT. Candi required a number of modifications. I'll post here what was needed for future reference: 

vi candi.cfg was edited to look like below: 

#Choose configuration and components of deal.II

DEAL_CONFOPTS=" \

-D DEAL_II_COMPONENT_PARAMETER_GUI=OFF \

-D CMAKE_BUILD_TYPE=DebugRelease \

-D DEAL_II_WITH_MPI:BOOL=ON \

-D DEAL_II_WITH_THREADS:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_THREADS:BOOL=OFF \

-D DEAL_II_COMPONENT_DOCUMENTATION:BOOL=OFF \

-D DEAL_II_WITH_SLEPC:BOOL=OFF \

-D DEAL_II_WITH_PETSC:BOOL=OFF \

-D DEAL_II_WITH_LAPACK:BOOL=ON \

-D DEAL_II_WITH_UMFPACK:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_UMFPACK:BOOL=OFF \

-D DEAL_II_WITH_BOOST:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_BOOST:BOOL=OFF \

-D DEAL_II_WITH_ZLIB:BOOL=ON \

-D DEAL_II_WITH_FUNCTIONPARSER:BOOL=ON \

-D DEAL_II_COMPONENT_MESH_CONVERTER:BOOL=ON"

PACKAGES="load:dealii-prepare"

#PACKAGES="${PACKAGES} once:opencascade"

#PACKAGES="${PACKAGES} once:parmetis"

#PACKAGES="${PACKAGES} once:superlu_dist"

PACKAGES="${PACKAGES} once:hdf5"

PACKAGES="${PACKAGES} once:p4est"

PACKAGES="${PACKAGES} once:trilinos"

#PACKAGES="${PACKAGES} once:petsc"

#PACKAGES="${PACKAGES} once:slepc"

PACKAGES="${PACKAGES} dealii"

then, 

cd deal.II-toolchain/

cd packages

vi dealii.package

CONFOPTS=" \

${DEAL_CONFOPTS} \

-D CMAKE_BUILD_TYPE=DebugRelease \

-D DEAL_II_WITH_MPI:BOOL=ON \

-D DEAL_II_WITH_THREADS:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_THREADS:BOOL=OFF \

-D DEAL_II_COMPONENT_DOCUMENTATION:BOOL=OFF \

-D DEAL_II_WITH_SLEPC:BOOL=OFF \

-D DEAL_II_WITH_PETSC:BOOL=OFF \

-D DEAL_II_WITH_LAPACK:BOOL=ON \

-D DEAL_II_WITH_UMFPACK:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_UMFPACK:BOOL=OFF \

-D DEAL_II_WITH_BOOST:BOOL=ON \

-D DEAL_II_FORCE_BUNDLED_BOOST:BOOL=OFF \

-D DEAL_II_WITH_ZLIB:BOOL=ON \

-D DEAL_II_WITH_FUNCTIONPARSER:BOOL=ON \

-D DEAL_II_COMPONENT_MESH_CONVERTER:BOOL=ON"

Changing ONLY the dealii.package does not turn PETSC off. 

For aspect - 

cmake -DDEAL_II_DIR=/.../deal.ii-candi/deal.II-v8.4.2 -DASPECT_USE_FP_EXCEPTIONS=OFF ..

The FP EXCEPTIONS was required for the aspect exectuable to pass any tests. 

I was working on Ubuntu 14.04