Compile error with function compute_bounding_box on GCC 8.5

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Reza Rastak

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Feb 28, 2019, 9:39:18 PM2/28/19

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Hi,

I tried to compile the master branch (commit f5375c1) on my system without any MPI or Trilinos or other dependencies. I received an error when compiling the function compute_bounding_box inside source/grid/grid_tools_cache.cc. It complains that IteratorFilters::LocallyOwnedCell is not derived from std::function<bool(active_cell_iterator&)>. There is no compilation error with the stable branch "dealii-9.0". Should I raise this issue on Github repo?

Thank you,

Reza Rastak

** Build config:

dealii/build$ cat revision.log

###

# Git information:

# Branch: master

# Revision: f5375c10e7b1731ee1d38a0d7a8c7b0a5f7f82a7

###

dealii/build$ cat summary.log

###

# deal.II configuration:

# CMAKE_BUILD_TYPE: DebugRelease

# BUILD_SHARED_LIBS: ON

# CMAKE_INSTALL_PREFIX: /usr/local

# CMAKE_SOURCE_DIR: /mnt/scratch/repos/dealii

# (version 9.1.0-pre, shortrev f5375c1)

# CMAKE_BINARY_DIR: /mnt/scratch/repos/dealii/build

# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64

# /usr/bin/c++

# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):

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# Detailed information (compiler flags, feature configuration) can be found in detailed.log

# Run $ make info to print a help message with a list of top level targets

#############################################################################

Make command:

dealii/build$ make obj_grid_debug

Scanning dependencies of target expand_instantiations_exe

Building CXX object cmake/scripts/CMakeFiles/expand_instantiations_exe.dir/expand_instantiations.cc.o

Linking CXX executable ../../bin/expand_instantiations

Built target expand_instantiations_exe

Scanning dependencies of target obj_grid_inst

Generating cell_id.inst

Generating grid_generator.inst

Generating grid_in.inst

Generating grid_out.inst

Generating grid_refinement.inst

Generating grid_tools.inst

Generating grid_tools_dof_handlers.inst

Generating grid_tools_cache.inst

Generating intergrid_map.inst

Generating manifold.inst

Generating manifold_lib.inst

Generating tria_accessor.inst

Generating tria.inst

Generating tria_objects.inst

Built target obj_grid_inst

Scanning dependencies of target obj_grid_debug

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/cell_id.cc.o

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/grid_in.cc.o

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/grid_out.cc.o

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/grid_refinement.cc.o

Building CXX object source/grid/CMakeFiles/obj_grid_debug.dir/grid_tools_cache.cc.o

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 1; int spacedim = 1; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<1, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<1, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<1, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<1, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:11:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<1, 1>&, dealii::IteratorFilters::LocallyOwnedCell&)’

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template<int dim, int spacedim> dealii::BoundingBox<spacedim> dealii::GridTools::compute_bounding_box(const dealii::Triangulation<dim, spacedim>&)

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template<class MeshType> std::pair<dealii::Point<MeshType:: space_dimension>, dealii::Point<MeshType:: space_dimension> > dealii::GridTools::compute_bounding_box(const MeshType&, const std::function<bool(const typename MeshType::active_cell_iterator&)>&)

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: ‘dealii::IteratorFilters::LocallyOwnedCell’ is not derived from ‘const std::function<bool(const typename MeshType::active_cell_iterator&)>’

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 1; int spacedim = 2; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<2, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<2, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<2, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<2, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:17:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<1, 2>&, dealii::IteratorFilters::LocallyOwnedCell&)’

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 1; int spacedim = 3; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<3, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<3, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:23:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<1, 3>&, dealii::IteratorFilters::LocallyOwnedCell&)’

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 2; int spacedim = 2; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<2, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<2, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<2, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<2, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:35:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<2, 2>&, dealii::IteratorFilters::LocallyOwnedCell&)’

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 2; int spacedim = 3; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<3, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<3, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:41:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<2, 3>&, dealii::IteratorFilters::LocallyOwnedCell&)’

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc: In instantiation of ‘dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> >& dealii::GridTools::Cache<dim, spacedim>::get_covering_rtree() const [with int dim = 3; int spacedim = 3; dealii::RTree<std::pair<dealii::BoundingBox<spacedim>, unsigned int> > = boost::geometry::index::rtree<std::pair<dealii::BoundingBox<3, double>, unsigned int>, boost::geometry::index::linear<16ul>, boost::geometry::index::indexable<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, boost::geometry::index::equal_to<std::pair<dealii::BoundingBox<3, double>, unsigned int> >, std::allocator<std::pair<dealii::BoundingBox<3, double>, unsigned int> > >]’:

/mnt/scratch/repos/dealii/build/source/grid/grid_tools_cache.inst:59:17: required from here

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: error: no matching function for call to ‘compute_bounding_box(const dealii::Triangulation<3, 3>&, dealii::IteratorFilters::LocallyOwnedCell&)’

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidates are:

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(const Triangulation<dim, spacedim> &triangulation);

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:244:3: note: template argument deduction/substitution failed:

/mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:172:78: note: candidate expects 1 argument, 2 provided

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

In file included from /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc:20:0:

compute_bounding_box(

/mnt/scratch/repos/dealii/include/deal.II/grid/grid_tools.h:1535:3: note: template argument deduction/substitution failed:

GridTools::compute_bounding_box(*tria, locally_owned_cell_predicate);

make[3]: *** [source/grid/CMakeFiles/obj_grid_debug.dir/grid_tools_cache.cc.o] Error 1

make[2]: *** [source/grid/CMakeFiles/obj_grid_debug.dir/all] Error 2

make[1]: *** [source/grid/CMakeFiles/obj_grid_debug.dir/rule] Error 2

make: *** [obj_grid_debug] Error 2

#######################################################################

Compilation command (taken from make VERBOSE=on obj_grid_debug)

cd /mnt/scratch/repos/dealii/build/source/grid && /usr/bin/c++ -DDEBUG -I/mnt/scratch/repos/dealii/build/source/grid -I/mnt/scratch/repos/dealii/build/include -I/mnt/scratch/repos/dealii/include -I/mnt/scratch/repos/dealii/bundled/boost-1.62.0/include -I/mnt/scratch/repos/dealii/bundled/muparser_v2_2_4/include -isystem /usr/include/suitesparse -pedantic -fPIC -Wall -Wextra -Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wswitch -Wsynth -Wwrite-strings -Wno-deprecated-declarations -Wno-literal-suffix -Wno-psabi -std=c++11 -Wno-unused-local-typedefs -O0 -ggdb -Wa,--compress-debug-sections -o CMakeFiles/obj_grid_debug.dir/grid_tools_cache.cc.o -c /mnt/scratch/repos/dealii/source/grid/grid_tools_cache.cc

Reza Rastak

unread,

Feb 28, 2019, 9:44:23 PM2/28/19

to deal.II User Group

I apologize because of typo in the subject line. Version is GCC 4.8.5

Reza

Jean-Paul Pelteret

unread,

Mar 1, 2019, 4:46:22 AM3/1/19

to dea...@googlegroups.com

Hi Reza,

Thanks for letting us know about this problem. Yes, its best to report these types of issues directly on the GitHub repository :-) I’ve opened an issue based on the details that you given. You can track it here:

https://github.com/dealii/dealii/issues/7771

It looks like our testers run GCC 4.9.4 and above, which is probably why we haven’t encountered this problem before. I’m not sure what the best fix for this should be, since I don’t see any reason as to why this problem should have arisen in the first place. But hopefully your report will lead to a discussion about this and a quick fix.

Thanks again!

Best,

Jean-Paul

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