Deal.ii is configured well but the make process doesn't complete (cygwin on windows 8)

[Hadi]

Hi 

I can configure deall.ii 7.2, 7.3 and even 8.0 but when I make the libraries I get errors. Here is a some of the lines which lead to the make being aborted:

     ^

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

======================optimized====== hp/fe_collection.cc

/cygdrive/c/Users/Hadi/Documents/deal.II/source/hp/dof_handler.cc:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default]

 //----------------------------  hp_dof_handler.cc  ------------------------

 ^

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h: In instantiation of ‘static void dealii::GeometryInfo<dim>::alternating_form_at_vertices(const dealii::Point<spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim = 2; int dim = 2]’:

/cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/grid_tools.cc:1534:9:   required from here

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h: In instantiation of ‘static void dealii::GeometryInfo<dim>::alternating_form_at_vertices(const dealii::Point<spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim = 3; int dim = 3]’:

/cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/grid_tools.cc:1534:9:   required from here

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/source/hp/fe_collection.cc:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default]

 //----------------------------  fe_collection.cc  ---------------------------

 ^

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h: In instantiation of ‘static void dealii::GeometryInfo<dim>::alternating_form_at_vertices(const dealii::Point<spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim = 2; int dim = 1]’:

/cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/grid_tools.cc:1534:9:   required from here

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h: In instantiation of ‘static void dealii::GeometryInfo<dim>::alternating_form_at_vertices(const dealii::Point<spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim = 3; int dim = 2]’:

/cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/grid_tools.cc:1534:9:   required from here

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

Makefile:43: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/optimized/grid_grid_tools.o' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/optimized/grid_grid_tools.o] Error 1

make[1]: *** Waiting for unfinished jobs....

In file included from /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/grid/tria.h:20:0,

                 from /cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/tria.cc:17:

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h: In instantiation of ‘static void dealii::GeometryInfo<dim>::alternating_form_at_vertices(const dealii::Point<spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim = 1; int dim = 1]’:

/cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/tria.cc:946:9:   required from here

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

     alternating_form_at_vertices

     ^

/cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/geometry_info.h:2164:5: error: size of array is not an integral constant-expression

Makefile:43: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/optimized/grid_tria.o' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/optimized/grid_tria.o] Error 1

make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/source'

Makefile:47: recipe for target `optimized' failed

make: *** [optimized] Error 2

I have built 7.2 version on both Mac and unix machines before but dont know if there is any trick with cygwin.

Thanks,

Hadi

[Matthias Maier]

Hi,

your compiler is faulty. It is most likely a development version for 4.8
that incorrectly emits the following error

error: size of array is not an integral expression

This is fixed in the release version of gcc 4.8.

Best,
Matthias

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h: In instantiation of ‘static void
> dealii::GeometryInfo<dim>::alternating_form_at_vertices(const
> dealii::Point<spacedim> (&)[dealii::GeometryInfo
> <dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim>
> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim
> = 3; int dim = 3]’:
> /cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/

> grid_tools.cc:1534:9: required from here
> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/source/hp/

> fe_collection.cc:1:0: warning: -fPIC ignored for target (all code is
> position independent) [enabled by default]
> //---------------------------- fe_collection.cc
> ---------------------------
> ^
> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/
> geometry_info.h: In instantiation of ‘static void
> dealii::GeometryInfo<dim>::alternating_form_at_vertices(const
> dealii::Point<spacedim> (&)[dealii::GeometryInfo
> <dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim>
> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim
> = 2; int dim = 1]’:
> /cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/

> grid_tools.cc:1534:9: required from here
> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h: In instantiation of ‘static void
> dealii::GeometryInfo<dim>::alternating_form_at_vertices(const
> dealii::Point<spacedim> (&)[dealii::GeometryInfo
> <dim>::vertices_per_cell], dealii::Tensor<(spacedim - dim), spacedim>
> (&)[dealii::GeometryInfo<dim>::vertices_per_cell]) [with int spacedim
> = 3; int dim = 2]’:
> /cygdrive/c/Users/Hadi/Documents/deal.II/source/grid/

> grid_tools.cc:1534:9: required from here
> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> geometry_info.h:2164:5: error: size of array is not an integral
> constant-expression

> /cygdrive/c/Users/Hadi/Documents/deal.II/include/deal.II/base/

> deal.II/lib/optimized/grid_tria.o' failed
> make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/optimized/

> grid_tria.o] Error 1
> make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/
> source'
> Makefile:47: recipe for target `optimized' failed
> make: *** [optimized] Error 2
>
> I have built 7.2 version on both Mac and unix machines before but
> dont know if there is any trick with cygwin.
>
> Thanks,
> Hadi
>

> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see https://groups.google.com/d/forum
> /dealii?hl=en
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>

[Hadi]

But I have gcc 4.8.1

these are the configuring output lines:

$ ./configure

Configuring deal.II version 7.2.0

checking build system type... x86_64-unknown-cygwin

checking host system type... x86_64-unknown-cygwin

checking target system type... x86_64-unknown-cygwin

---------------- configuring C/C++ compilers ----------------

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.exe

checking for suffix of executables... .exe

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for gcc... /usr/bin/gcc

checking for g++... g++

checking whether we are using the GNU C++ compiler... yes

checking whether g++ accepts -g... yes

checking for g++... /usr/bin/g++

C++ compiler is gcc4.8 (subversion gcc4.8.1)

checking if the compiler is built for MPI... no

checking whether compiler has a flag to support C++2011... yes

checking for std::array... yes

checking for std::condition_variable... yes

checking for std::function and std::bind... yes

checking for std::bind works with rvalues... yes

checking for std::shared_ptr... yes

checking for std::thread... yes

checking whether std::thread actually works... yes

checking for std::mutex... yes

checking for std::tuple... yes

checking for std::type_traits... yes

checking whether C++1x support is complete enough... yes

checking for auto typed variables... yes

checking for range-based for... no

checking whether compiler has attributes to deprecate functions... yes

checking whether qualifiers in return types lead to a warning... no

checking for std::advance warning... no

checking whether -ggdb works... yes

C compiler is gcc4.8

checking whether AssertThrow works with debug flags... yes

checking whether AssertThrow works with optimized flags... yes

checking for local computed template typedef bug... no

checking for partially specialized template access control bug... no

checking for template member operator instantiation bug... no

checking for explicit destructor call bug... no

checking for 1st template friend in namespace bug... no

checking for 2nd template friend in namespace bug... no

checking for template specialization friend bug... no

checking for bug with implementing pure functions... yes. using workaround

checking for template template typedef bug... no

checking for address of template template function bug... no

checking for nested classes are implicit friends bug... no

checking for nested template class friends bug... yes. using workaround

checking for member variable specialization bug... no

checking for member array specialization bug... no

checking for template member function specialization bug... no

checking for long double optimization bug... no

checking for anonymous namespace and name mangling bug... no

checking for anonymous namespace and weak linkage bug... no

checking for bogus warning with anonymous namespaces... no

checking for SFINAE bug... no

checking for template operator disambiguation bug... no

checking for array assignment in conditional bug... no

checking for array argument bug... no

checking for explicit template constructor bug... no

checking for const member deduction bug... no

checking for warning bug with type qualifiers... no

checking for problem with -Wsynth and std::complex... no

checking for problem with -Wctor-dtor-privacy... no

checking whether vector iterators are plain pointers... no

checking for __PRETTY_FUNCTION__... yes

checking for std::iterator class... yes

checking for std::i/ostringstream classes... yes

checking for std::numeric_limits classes... yes

checking for <ostream> header... yes

checking for <iosfwd> header... yes

checking for __builtin_expect... yes

checking for __verbose_terminate_handler... yes

checking for glibc-like stacktrace information... no

checking for libstdc++ demangler... yes

checking for minimal std::vector<T> capacity... 1

checking for minimal std::vector<bool> capacity... 64

checking for exception specifications on abort()... none

checking whether getrusage is properly declared... yes

checking whether isnan is declared with debug flags... no.

checking whether isnan is declared with optimized flags... no.

checking for std::isfinite... yes

checking for rand_r... no

checking for quad vs. quad_t define... yes. working around

checking for definitions of error codes in errno.h... yes

checking for gethostname... yes

checking for getpid... yes

checking how to run the C++ preprocessor... /usr/bin/g++  -E

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for sys/syscall.h... no

checking for sys/times.h... yes

checking for times... yes

checking for bad socket functions/FPU interaction... no

---------------- configuring F77 compilers ------------------

checking for gfortran... no

---------------- configuring shared/static libs -------------

checking whether compiler understands option -Wl,-soname... yes

checking whether compiler understands option -Wl,-dynamic,-install_name... no

checking whether compiler understands option -Wl,-rpath... yes

checking for ar... ar

checking for ar... /usr/bin/ar

checking for ranlib... ranlib

checking for ranlib... /usr/bin/ranlib

---------------- configuring optional features --------------

---------------- configuring additional libs ----------------

checking boost/shared_ptr.hpp usability... yes

checking boost/shared_ptr.hpp presence... yes

checking for boost/shared_ptr.hpp... yes

checking boost/type_traits.hpp usability... yes

checking boost/type_traits.hpp presence... yes

checking for boost/type_traits.hpp... yes

checking boost/tuple/tuple.hpp usability... yes

checking boost/tuple/tuple.hpp presence... yes

checking for boost/tuple/tuple.hpp... yes

checking for boost::shared_ptr assignment operator= template buglet... no

checking for boost::bind compiler internal error... no

checking for boost::graph compiler internal error... no

checking for PETSc library directory... not found

checking for SLEPc include directory... not found

checking for Trilinos directory... not found

checking for Trilinos header directory... not found

checking for Trilinos library directory... not found

checking for a sed that does not truncate output... /usr/bin/sed

checking for gawk... gawk

checking for h5cc... no

checking for h5pcc... no

checking for HDF5 libraries... no

checking for ARPACK library directory... no

checking for MUMPS library directory... no

checking whether p4est will be used... no

checking for HSL subroutines... none found

checking for crc32 in -lz... no

checking whether byte ordering is bigendian... no

checking netcdfcpp.h usability... no

checking netcdfcpp.h presence... no

checking for netcdfcpp.h... no

checking for nc_open in -lnetcdf... no

checking for daxpy_... no

checking for saxpy_... no

checking for dgemv_... no

checking for sgemv_... no

checking for dgeev_... no

checking for sgeev_... no

checking for dgeevx_... no

checking for sgeevx_... no

checking for dgemm_... no

checking for sgemm_... no

checking for dgetrf_... no

checking for sgetrf_... no

checking for dgetri_... no

checking for sgetri_... no

checking for dgeqrf_... no

checking for sgeqrf_... no

checking for dormqr_... no

checking for sormqr_... no

checking for dorgqr_... no

checking for sorgqr_... no

checking for dtrtrs_... no

checking for strtrs_... no

checking for dgetrs_... no

checking for sgetrs_... no

checking for dstev_... no

checking for sstev_... no

checking for dsygv_... no

checking for ssygv_... no

checking for dsygvx_... no

checking for ssygvx_... no

checking for dsyevx_... no

checking for ssyevx_... no

checking for dgesvd_... no

checking for sgesvd_... no

checking for dgesdd_... no

checking for sgesdd_... no

checking for dgelsd_... no

checking for sgelsd_... no

checking for jn... yes

---------------- checking compiler flags --------------------

checking for CPU to optimize for... none given or not recognized

checking for consistency of CXXFLAGSG flags... yes

checking for consistency of CXXFLAGSO flags... yes

checking whether CPU supports SSE2... yes

checking whether CPU supports AVX... no

checking whether compiler supports vector arithmetics... yes

---------------- configuring other programs -----------------

checking for doxygen... /usr/bin/doxygen

checking doxygen version... 1.5.x or later

checking for dot... no

checking for perl... /usr/bin/perl

checking for qmake... no

---------------- generating output --------------------------

configure: creating ./config.status

config.status: creating common/Make.global_options

config.status: creating common/scripts/make_dependencies.pl

config.status: creating common/scripts/make_todo.pl

config.status: creating Version

config.status: creating common/template-arguments

config.status: creating common/dealiitemplates.pm

config.status: creating doc/Makefile

config.status: creating doc/title.html

config.status: creating doc/doxygen/Makefile

config.status: creating doc/doxygen/options.dox

config.status: creating doc/doxygen/options.136

config.status: creating doc/doxygen/header.html

config.status: creating doc/doxygen/header.136

config.status: creating doc/doxygen/header.tex

config.status: creating include/deal.II/base/config.h

=== configuring in contrib (/cygdrive/c/Users/Hadi/Documents/deal.II/contrib)

configure: running /bin/sh ./configure --disable-option-checking '--prefix=/cygd                                                                                                                rive/c/Users/Hadi/Documents/deal.II'  --cache-file=/dev/null --srcdir=.

---------------- configuring contrib subdir -----------------

configure: creating ./config.status

config.status: creating Makefile

=== configuring in utilities (/cygdrive/c/Users/Hadi/Documents/deal.II/contrib/u                                                                                                                tilities)

configure: running /bin/sh ./configure --disable-option-checking '--prefix=/cygd                                                                                                                rive/c/Users/Hadi/Documents/deal.II'  --cache-file=/dev/null --srcdir=.

configure: creating ./config.status

config.status: creating Makefile

-------------------------------------------------------------

     The  deal.II  library is now configured. In order to

     compile it and to generate the  documentation,  just

     call 'make' without arguments for a list of options.

     For more information, see the doc/readme.html file.

-------------------------------------------------------------

     Please add the line

        export PATH=$PATH:/cygdrive/c/Users/Hadi/Documents/deal.II/lib

     to your .bash_profile file so that windows will be

     able to find the deal.II shared libraries when

     executing your programs.

Hadi

[Guido Kanschat]

You are using deal version 7 2.0. I suggest upgrading to 8.0.0 or at least,  if the new cmake build system causes trouble,  to 7.3.

Best, Guido

[Hadi]

I mentioned in my first post that I have tried all three. All three are configured well but do not compile properly.

[Daniel Brauss]

Not sure if this will help, but there is a archived similar problem for macs (from April)

https://groups.google.com/forum/#!topic/dealii/vkuJhsPHbqI

--

[Hadi]

I need some help on how to downgrade my gcc compiler to 4.7.1. The cygwin I am using has only 4.8.0 and 4.8.1 versions.

[Matthias Maier]

Can you try to compile deal.II version 8.0.0 with gcc 4.7* or with clang 3* under cygwin?

I am able to compile the library with these compilers under cygwin. Currently, I get some nasty segmentation faults with the debug version, though. (And I lack the time to look into it...)

So, some help with Cygwin would be highly appreciated. :-D

Best,

Matthias

[Hadi]

I tried deal.ii 7.3.0 with gcc 4.7.3 and again failed. But this time it was a bit different, chck the lines below,

=====deal.II==========optimized====== Linking library:   libdeal_II.dll

/cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/fparser.o: file not recognized: File format not recognized

collect2: error: ld returned 1 exit status

Makefile:195: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.dll' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.dll] Error 1

make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/source'

Makefile:47: recipe for target `optimized' failed

make: *** [optimized] Error 2

make: *** Waiting for unfinished jobs....

/cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/fparser.o: file not recognized: File format not recognized

collect2: error: ld returned 1 exit status

Makefile:180: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.g.dll' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.g.dll] Error 1

make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/source'

Makefile:44: recipe for target `debug' failed

make: *** [debug] Error 2

let me know what to do based on this?

Hadi

On Friday, July 26, 2013 1:03:45 AM UTC-7, Hadi wrote:

[Hadi]

Tried deal.II 8.0.0 and again failed (gcc 4.7.3)

[100%] Built target obj_fe.release

bfd_close libdeal_II.g.dll.a: Memory exhausted

/usr/lib/gcc/i686-pc-cygwin/4.7.3/../../../../i686-pc-cygwin/bin/ld: final link failed: Memory exhausted

collect2: error: ld returned 1 exit status

source/CMakeFiles/deal_II.g.dir/build.make:553: recipe for target `source/cygdeal_II.g-8.0.0.dll' failed

make[2]: *** [source/cygdeal_II.g-8.0.0.dll] Error 1

CMakeFiles/Makefile2:594: recipe for target `source/CMakeFiles/deal_II.g.dir/all' failed

make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2

make[1]: *** Waiting for unfinished jobs....

[100%] Built target obj_numerics.release

Makefile:116: recipe for target `all' failed

make: *** [all] Error 2

On Friday, July 26, 2013 1:03:45 AM UTC-7, Hadi wrote:

[Wolfgang Bangerth]

On 07/26/2013 05:20 PM, Hadi wrote:
> Tried deal.II 8.0.0 and again failed (gcc 4.7.3)
>

> *[100%] Built target obj_fe.release*
> *bfd_close libdeal_II.g.dll.a: Memory exhausted*

But that is not something we can do very much about. How much memory do you have?

Best
W.

--
------------------------------------------------------------------------
Wolfgang Bangerth email: bang...@math.tamu.edu
www: http://www.math.tamu.edu/~bangerth/

[Hadi]

8GB 

[Hadi]

Maybe I should not use the -jN when making?

[Wolfgang Bangerth]

On 07/26/2013 05:35 PM, Hadi wrote:
> Maybe I should not use the -jN when making?

Worth trying. 8GB should be enough, in principle. However, it is possible that
your programs aren't allowed to use this much. On unix, this is usually
determined by calling 'ulimit' on the command line. It is not uncommon to
limit the amount of memory any program can ask for (and limit it to less than
the physical amount of memory) to ensure that multiple programs can run at the
same time. I don't know how this is done on cygin, though.

[Hadi]

Thanks Wolfgang,

Unfortunately it didnt work. It uses up to 67% of physical memory. I am not sure how to check or remove any memory limitation on my machine.

When I tried to install deal.II 7.3.0 the same compiler gave a different error when linking:

=====deal.II==========optimized====== Linking library:   libdeal_II.dll

/cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/fparser.o: file not recognized: File format not recognized

collect2: error: ld returned 1 exit status

Makefile:195: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.dll' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.dll] Error 1

make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/source'

Makefile:47: recipe for target `optimized' failed

make: *** [optimized] Error 2

make: *** Waiting for unfinished jobs....

/cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/fparser.o: file not recognized: File format not recognized

collect2: error: ld returned 1 exit status

Makefile:180: recipe for target `/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.g.dll' failed

make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/libdeal_II.g.dll] Error 1

make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/source'

Makefile:44: recipe for target `debug' failed

make: *** [debug] Error 2

Is there a connection between the two?

[Matthias Maier]

Am 26. Jul 2013, 23:47 schrieb Hadi <hra...@gmail.com>:

> I tried deal.ii 7.3.0 with gcc 4.7.3 and again failed. But this time
> it was a bit different, chck the lines below,
>
> =====deal.II==========optimized====== Linking library:
> libdeal_II.dll
> /cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/
> fparser.o: file not recognized: File format not recognized
> collect2: error: ld returned 1 exit status
> Makefile:195: recipe for target `/cygdrive/c/Users/Hadi/Documents/
> deal.II/lib/libdeal_II.dll' failed
> make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/
> libdeal_II.dll] Error 1
> make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/
> source'
> Makefile:47: recipe for target `optimized' failed
> make: *** [optimized] Error 2
> make: *** Waiting for unfinished jobs....
> /cygdrive/c/Users/Hadi/Documents/deal.II/lib/contrib/functionparser/
> fparser.o: file not recognized: File format not recognized
> collect2: error: ld returned 1 exit status
> Makefile:180: recipe for target `/cygdrive/c/Users/Hadi/Documents/
> deal.II/lib/libdeal_II.g.dll' failed
> make[1]: *** [/cygdrive/c/Users/Hadi/Documents/deal.II/lib/

> libdeal_II.g.dll] Error 1

> make[1]: Leaving directory `/cygdrive/c/Users/Hadi/Documents/deal.II/
> source'

> Makefile:44: recipe for target `debug' failed
> make: *** [debug] Error 2
>
> let me know what to do based on this?
>
> Hadi

You're using cygwin64 or cygwin32?

With cygwin64 and gcc-4.8.1 I can reproduce your compilation errors - and
_a lot_ more (several internal segmentation faults, too-many-section
errors, runtime segfaults in several steps, etc.)

gcc-4.8.1 on *Nix works without any problems..

Best,
Matthias

[Hadi]

I have tried cygwin64 with gcc 4.8.1. and cygwin32 with gcc 4.7.3.

I will install a linux this seems to be better way.

On Friday, July 26, 2013 1:03:45 AM UTC-7, Hadi wrote:

[Timo Heister]

> I will install a linux this seems to be better way.

Yes, that is probably a good idea. Most of the developers use Linux
(some mac os and there are some difficulties, and none I know use
windows).

Have you tried mingw under windows without cygwin? It works starting
with deal 8.0. Note that some things like TBB/MPI ... might not work.

--
Timo Heister
http://www.math.clemson.edu/~heister/