build failed: 3 - affinity.debug
Josh Ducey
Joshuas-MacBook-Pro:build joshuaducey$ make test
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_meshworker.inst
[ 0%] Built target obj_meshworker.release
[ 8%] Built target obj_umfpack_I_UMF.release
[ 10%] Built target obj_dofs.inst
[ 12%] Built target obj_dofs.release
[ 12%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.release
[ 14%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.release
[ 14%] Built target obj_umfpack_DL_STORE.release
[ 19%] Built target obj_umfpack_I_UMFPACK.release
[ 25%] Built target obj_umfpack_L_UMFPACK.release
[ 25%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.release
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_X.release
[ 33%] Built target obj_umfpack_L_UMF.release
[ 33%] Built target obj_umfpack_DI_TRIPLET_MAP_X.release
[ 33%] Built target obj_umfpack_DI_STORE.release
[ 33%] Built target obj_umfpack_DI_TSOLVE.release
[ 33%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.release
[ 35%] Built target obj_umfpack_DI_ASSEMBLE.release
[ 35%] Built target obj_umfpack_DI_SOLVE.release
[ 35%] Built target obj_umfpack_DL_TSOLVE.release
[ 35%] Built target obj_umfpack_DL_ASSEMBLE.release
[ 35%] Built target obj_umfpack_DL_SOLVE.release
[ 35%] Built target obj_umfpack_GENERIC.release
[ 35%] Built target obj_amd_global.release
[ 41%] Built target obj_boost_serialization.release
[ 46%] Built target obj_tbb.release
[ 48%] Built target obj_amd_int.release
[ 48%] Built target obj_functionparser.release
[ 51%] Built target obj_amd_long.release
[ 57%] Built target obj_fe.inst
[ 62%] Built target obj_fe.release
[ 66%] Built target obj_numerics.inst
[ 69%] Built target obj_numerics.release
[ 73%] Built target obj_lac.inst
[ 82%] Built target obj_lac.release
[ 82%] Built target obj_base.inst
[ 89%] Built target obj_base.release
[ 91%] Built target obj_grid.inst
[ 94%] Built target obj_grid.release
[ 96%] Built target obj_hp.inst
[ 96%] Built target obj_hp.release
[ 98%] Built target obj_multigrid.inst
[ 98%] Built target obj_multigrid.release
[ 98%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.release
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.release
[100%] Built target obj_algorithms.inst
[100%] Built target obj_algorithms.release
[100%] Built target obj_integrators.release
[100%] Built target deal_II
Scanning dependencies of target build_library
[100%] Built target build_library
Scanning dependencies of target test
Test project /Users/joshuaducey/Desktop/deal/build/tests/quick_tests
Start 1: step.debug
1/4 Test #1: step.debug ....................... Passed 9.32 sec
Start 2: step.release
2/4 Test #2: step.release ..................... Passed 7.79 sec
Start 3: affinity.debug
3/4 Test #3: affinity.debug ...................***Failed 6.15 sec
/Users/joshuaducey/Desktop/deal/deal.II/tests/quick_tests/affinity.cc:26:3: error: unknown type name 'cpu_set_t'
cpu_set_t my_set;
^
/Users/joshuaducey/Desktop/deal/deal.II/tests/quick_tests/affinity.cc:39:18: error: use of undeclared identifier 'CPU_SETSIZE'
for (int i=0;i<CPU_SETSIZE;++i)
^
2 errors generated.
make[7]: *** [tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/affinity.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2
make[4]: *** [affinity.debug.run] Error 2
Test affinity.debug: BUILD
=============================== OUTPUT BEGIN ===============================
affinity.debug: BUILD failed. Output:
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_meshworker.inst
[ 0%] Built target obj_meshworker.debug
[ 7%] Built target obj_umfpack_L_UMF.debug
[ 14%] Built target obj_umfpack_I_UMF.debug
[ 16%] Built target obj_dofs.inst
[ 20%] Built target obj_dofs.debug
[ 20%] Built target obj_umfpack_DI_TRIPLET_MAP_X.debug
[ 20%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.debug
[ 20%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.debug
[ 24%] Built target obj_umfpack_I_UMFPACK.debug
[ 25%] Built target obj_umfpack_DI_TSOLVE.debug
[ 25%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.debug
[ 25%] Built target obj_umfpack_DL_TRIPLET_MAP_X.debug
[ 25%] Built target obj_umfpack_DI_STORE.debug
[ 29%] Built target obj_umfpack_L_UMFPACK.debug
[ 29%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.debug
[ 29%] Built target obj_umfpack_DL_STORE.debug
[ 29%] Built target obj_umfpack_DI_ASSEMBLE.debug
[ 29%] Built target obj_umfpack_DI_SOLVE.debug
[ 29%] Built target obj_umfpack_DL_TSOLVE.debug
[ 29%] Built target obj_umfpack_DL_ASSEMBLE.debug
[ 29%] Built target obj_umfpack_DL_SOLVE.debug
[ 31%] Built target obj_umfpack_GENERIC.debug
[ 33%] Built target obj_amd_int.debug
[ 38%] Built target obj_boost_serialization.debug
[ 40%] Built target obj_functionparser.debug
[ 46%] Built target obj_tbb.debug
[ 48%] Built target obj_amd_long.debug
[ 48%] Built target obj_amd_global.debug
[ 51%] Built target obj_numerics.inst
[ 57%] Built target obj_numerics.debug
[ 62%] Built target obj_fe.inst
[ 68%] Built target obj_fe.debug
[ 72%] Built target obj_lac.inst
[ 81%] Built target obj_lac.debug
[ 81%] Built target obj_base.inst
[ 88%] Built target obj_base.debug
[ 90%] Built target obj_grid.inst
[ 92%] Built target obj_grid.debug
[ 94%] Built target obj_hp.inst
[ 94%] Built target obj_hp.debug
[ 96%] Built target obj_multigrid.inst
[ 98%] Built target obj_multigrid.debug
[ 98%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_integrators.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target deal_II.g
Scanning dependencies of target kill-affinity.debug-OK
[100%] Built target kill-affinity.debug-OK
Scanning dependencies of target affinity.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o
affinity.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at /Users/joshuaducey/Desktop/deal/deal.II/cmake/scripts/run_test.cmake:124 (MESSAGE):
*** abort
Start 4: tbb.debug
4/4 Test #4: tbb.debug ........................ Passed 6.43 sec
75% tests passed, 1 tests failed out of 4
Total Test time (real) = 29.69 sec
The following tests FAILED:
3 - affinity.debug (Failed)
Errors while running CTest
******************************* WARNING *******************************
Some of the tests failed!
Please scroll up or check the file tests/quick_tests/quicktests.log for the
error messages. If you are unable to fix the problems, see the FAQ or write
to the mailing list linked at http://www.dealii.org
The affinity test can fail when you are linking in a library like BLAS
which uses OpenMP. Even without calling any BLAS functions, OpenMP messes
with the thread affinity which causes TBB to run single-threaded only. You
can fix this by exporting OMP_NUM_THREADS=1.
Built target test
Timo Heister
is this deal.II 8.1? I think I messed up the affinity test on mac. You
can ignore this test.
(This is fixed in the recent development version.)
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--
Timo Heister
http://www.math.clemson.edu/~heister/