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程迪
Aug 8, 2018, 1:09:58 AM8/8/18
to deal.II User Group
Hi, everyone.
3. create a docker container:
5. I tried to use cmake plugins of vs2017. It works. I can compile and debug step by step. But a lot of modification to the VSC-like json configuration files is needed. But I do not like cmake very much because it hides a lot of things.
and I found the libraries are so huge, especially the debug lib:
I doubt if this is a good practice?
I am trying to use visual studio 2017 linux dev workloads to compile and debug tutorial step1 remotely on docker container. I want to use intellisense of vs to help me. But I cannot figure out how.
Here is my steps:
1. I followed (https://docs.microsoft.com/en-us/cpp/linux/download-install-and-setup-the-linux-development-workload) to install and configured visual studio 2017 CE
2. I installed docker engine on windows using virtualbox and boot2docker. And I recreated the docker machine to use more cpus.
# stop`default` docker machinedocker-machine stop default# delet`default` docker machine，and all imagesdocker-machine rm default# create `default` docker machinedocker-machine create -d virtualbox --virtualbox-cpu-count=4 --virtualbox-memory=4096 --virtualbox-disk-size=50000 default# Restart dockerdocker-machine stopexitdocker run --name dealii_vs -w /home/dealii -i -t -d -v /c/Users/cheng:/home/dealii/shared -p 192.168.99.100:8022:22 -p 192.168.99.100:8023-8025:8023-8025 --cap-add=SYS_PTRACE dealii/dealii:latest
# --cap-add=SYS_PTRACE is necessary for gdbserver.
docker exec -u root -it dealii_vs bash # use root to do something inside4. configure inside of the docker container
apt-get update apt-get install openssh-server gdb gdbserver zip vim-nox -y # download some software, vim-nox is not necessary.# newer cmake, vs2017 need cmake 3.8+# install to /opt/cmake/3.12.0mkdir -p /opt/cmake/3.12.0# modify sshd to auto load some env_vars.
# vs 2017 is using ssh to run commands remotely in `non-interactive` shell, which won't load `~/.bashrc` or docker's `ENV`
# however, opensshd has an option to load some env_vars even in `non-interactive` shellcat >>/etc/ssh/sshd_config <<EOF# add by Di ChengPermitUserEnvironment yesEOF# add environment variable, almost identical to output of `docker exec dealii_vs env`mkdir -p /home/dealii/.sshtouch /home/dealii/.ssh/environmentcat >/home/dealii/.ssh/environment <<EOFLANG=en_US.UTF-8LANGUAGE=en_US:enLC_ALL=en_US.UTF-8HOME=/home/dealiiUSER=dealiiCC=mpiccCXX=mpicxxFC=mpif90FF=mpif77ARPACK_DIR=/home/dealii/libs/arpack-ng-masterHDF5_DIR=/home/dealii/libs/hdf5-1.8.15-patch1OPENCASCADE_DIR=/home/dealii/libs/oce-OCE-0.17P4EST_DIR=/home/dealii/libs/p4est-2.0METIS_DIR=/home/dealii/libs/parmetis-4.0.3PARMETIS_DIR=/home/dealii/libs/parmetis-4.0.3PETSC_DIR=/home/dealii/libs/petsc-3.6.4SLEPC_DIR=/home/dealii/libs/slepc-3.6.0SUPERLU_DIR=/home/dealii/libs/superlu_dist_5.1.2TRILINOS_DIR=/home/dealii/libs/trilinos-release-12-10-1DEAL_II_DIR=/home/dealii/dealii-masterPATH=/opt/cmake/3.12.0/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/binEOF# cat /home/dealii/.ssh/environment
echo "dealii:dealii" | chpasswd # modify passwordapt-get clean # clean for docker commit
service ssh start #start sshd
exit # return to windows5. I tried to use cmake plugins of vs2017. It works. I can compile and debug step by step. But a lot of modification to the VSC-like json configuration files is needed. But I do not like cmake very much because it hides a lot of things.
{ # sample CMakeSettings.json "name": "Linux-Debug", "generator": "Unix Makefiles", # use first one in Tools>Options>CrossPlatform>ConnectionManager by default. "remoteMachineName": "192.168.99.100", "configurationType": "Debug", "remoteCMakeListsRoot": "/var/tmp/src/${workspaceHash}/${name}", # cmake location "cmakeExecutable": "/opt/cmake/3.12.0/bin/cmake", "buildRoot": "${env.USERPROFILE}\\CMakeBuilds\\${workspaceHash}\\build\\${name}", "installRoot": "${env.USERPROFILE}\\CMakeBuilds\\${workspaceHash}\\install\\${name}", "remoteBuildRoot": "/var/tmp/build/${workspaceHash}/build/${name}", "remoteInstallRoot": "/var/tmp/build/${workspaceHash}/install/${name}", "remoteCopySources": true, "remoteCopySourcesOutputVerbosity": "Normal", "remoteCopySourcesConcurrentCopies": "10", # rsync is buggy, use sftp "remoteCopySourcesMethod": "sftp", "remoteCopyBuildOutput": false, # pass -DDEAL_II_DIR=/home/dealii/dealii-master here or pass it by `~/.ssh/environment` "cmakeCommandArgs": "", "buildCommandArgs": "", "ctestCommandArgs": "", "inheritEnvironments": [ "linux_x64" ] },6. I tried to figure out what header and libs dealii tutorial code is using, however, OMG:
$ make VERBOSE=1/usr/bin/cmake -H/home/dealii/shared/dealII/examples/step-1 -B/home/dealii/shared/dealII/examples/step-1 --check-build-system CMakeFiles/Makefile.cmake 0/usr/bin/cmake -E cmake_progress_start /home/dealii/shared/dealII/examples/step-1/CMakeFiles /home/dealii/shared/dealII/examples/step-1/CMakeFiles/progress.marksmake -f CMakeFiles/Makefile2 allmake[1]: Entering directory '/home/dealii/shared/dealII/examples/step-1'make -f CMakeFiles/step-1.dir/build.make CMakeFiles/step-1.dir/dependmake[2]: Entering directory '/home/dealii/shared/dealII/examples/step-1'cd /home/dealii/shared/dealII/examples/step-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dealii/shared/dealII/examples/step-1 /home/dealii/shared/dealII/examples/step-1 /home/dealii/shared/dealII/examples/step-1 /home/dealii/shared/dealII/examples/step-1 /home/dealii/shared/dealII/examples/step-1/CMakeFiles/step-1.dir/DependInfo.cmake --color=make[2]: Leaving directory '/home/dealii/shared/dealII/examples/step-1'make -f CMakeFiles/step-1.dir/build.make CMakeFiles/step-1.dir/buildmake[2]: Entering directory '/home/dealii/shared/dealII/examples/step-1'[ 50%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o/usr/bin/mpicxx -DDEBUG -DTBB_DO_ASSERT=1 -DTBB_USE_DEBUG -isystem /home/dealii/dealii-master/include -isystem /home/dealii/dealii-master/include/deal.II/bundled -isystem /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -isystem /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -isystem /usr/lib/openmpi/include -isystem /usr/lib/openmpi/include/openmpi -isystem /home/dealii/libs/parmetis-4.0.3/include -isystem /home/dealii/libs/trilinos-release-12-10-1/include -isystem /home/dealii/libs/superlu_dist_5.1.2/include -isystem /home/dealii/libs/petsc-3.6.4/include -isystem /home/dealii/libs/hdf5-1.8.15-patch1/include -isystem /home/dealii/libs/p4est-2.0/FAST/include -isystem /home/dealii/libs/slepc-3.6.0/include -pedantic -fPIC -Wall -Wextra -Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual -Wno-literal-suffix -fopenmp-simd -std=c++14 -std=c++14 -Wno-parentheses -Wno-unused-local-typedefs -Og -ggdb -Wa,--compress-debug-sections -o CMakeFiles/step-1.dir/step-1.cc.o -c /home/dealii/shared/dealII/examples/step-1/step-1.cc[100%] Linking CXX executable step-1/usr/bin/cmake -E cmake_link_script CMakeFiles/step-1.dir/link.txt --verbose=1/usr/bin/mpicxx -rdynamic -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -ggdb CMakeFiles/step-1.dir/step-1.cc.o -o step-1 -rdynamic /home/dealii/dealii-master/lib/libdeal_II.g.so.9.0.0-pre /home/dealii/libs/p4est-2.0/DEBUG/lib/libp4est.so /home/dealii/libs/p4est-2.0/DEBUG/lib/libsc.so -lz /home/dealii/libs/trilinos-release-12-10-1/lib/libmuelu-adapters.so /home/dealii/libs/trilinos-release-12-10-1/lib/libmuelu-interface.so /home/dealii/libs/trilinos-release-12-10-1/lib/libmuelu.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteko.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikos.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikosbelos.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikosaztecoo.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikosamesos.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikosml.so /home/dealii/libs/trilinos-release-12-10-1/lib/libstratimikosifpack.so /home/dealii/libs/trilinos-release-12-10-1/lib/libifpack2-adapters.so /home/dealii/libs/trilinos-release-12-10-1/lib/libifpack2.so /home/dealii/libs/trilinos-release-12-10-1/lib/libanasazitpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libModeLaplace.so /home/dealii/libs/trilinos-release-12-10-1/lib/libanasaziepetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libanasazi.so /home/dealii/libs/trilinos-release-12-10-1/lib/libamesos2.so /home/dealii/libs/trilinos-release-12-10-1/lib/libbelostpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libbelosepetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libbelos.so /home/dealii/libs/trilinos-release-12-10-1/lib/libml.so /home/dealii/libs/trilinos-release-12-10-1/lib/libifpack.so /home/dealii/libs/trilinos-release-12-10-1/lib/libzoltan2.so /home/dealii/libs/trilinos-release-12-10-1/lib/libpamgen_extras.so /home/dealii/libs/trilinos-release-12-10-1/lib/libpamgen.so /home/dealii/libs/trilinos-release-12-10-1/lib/libamesos.so /home/dealii/libs/trilinos-release-12-10-1/lib/libgaleri-xpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libgaleri-epetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libaztecoo.so /home/dealii/libs/trilinos-release-12-10-1/lib/libisorropia.so /home/dealii/libs/trilinos-release-12-10-1/lib/libxpetra-sup.so /home/dealii/libs/trilinos-release-12-10-1/lib/libxpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libthyratpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libthyraepetraext.so /home/dealii/libs/trilinos-release-12-10-1/lib/libthyraepetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libthyracore.so /home/dealii/libs/trilinos-release-12-10-1/lib/libepetraext.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetraext.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetrainout.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libkokkostsqr.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetrakernels.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetraclassiclinalg.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetraclassicnodeapi.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtpetraclassic.so /home/dealii/libs/trilinos-release-12-10-1/lib/libtriutils.so /home/dealii/libs/trilinos-release-12-10-1/lib/libzoltan.so /home/dealii/libs/trilinos-release-12-10-1/lib/libepetra.so /home/dealii/libs/trilinos-release-12-10-1/lib/libsacado.so /home/dealii/libs/trilinos-release-12-10-1/lib/librtop.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchoskokkoscomm.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchoskokkoscompat.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchosremainder.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchosnumerics.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchoscomm.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchosparameterlist.so /home/dealii/libs/trilinos-release-12-10-1/lib/libteuchoscore.so /home/dealii/libs/trilinos-release-12-10-1/lib/libkokkosalgorithms.so /home/dealii/libs/trilinos-release-12-10-1/lib/libkokkoscontainers.so /home/dealii/libs/trilinos-release-12-10-1/lib/libkokkoscore.so /home/dealii/libs/superlu_dist_5.1.2/lib/libsuperlu_dist.so /home/dealii/libs/arpack-ng-master/lib/libarpack.so -lrt -lgsl -lgslcblas /home/dealii/libs/hdf5-1.8.15-patch1/lib/libhdf5_hl.so /home/dealii/libs/hdf5-1.8.15-patch1/lib/libhdf5.so -lnetcdf_c++ -lnetcdf -lc /home/dealii/libs/slepc-3.6.0/lib/libslepc.so /home/dealii/libs/petsc-3.6.4/lib/libpetsc.so /home/dealii/libs/petsc-3.6.4/lib/libHYPRE.a /home/dealii/libs/petsc-3.6.4/lib/libcmumps.a /home/dealii/libs/petsc-3.6.4/lib/libdmumps.a /home/dealii/libs/petsc-3.6.4/lib/libsmumps.a /home/dealii/libs/petsc-3.6.4/lib/libzmumps.a /home/dealii/libs/petsc-3.6.4/lib/libmumps_common.a /home/dealii/libs/petsc-3.6.4/lib/libpord.a /home/dealii/libs/petsc-3.6.4/lib/libscalapack.a -llapack -lblas /home/dealii/libs/parmetis-4.0.3/lib/libparmetis.so /home/dealii/libs/parmetis-4.0.3/lib/libmetis.so -lhwloc -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lquadmath -lm -lmpi_cxx -lmpi -lpthread -ldl -Wl,-rpath,/home/dealii/dealii-master/lib:/home/dealii/libs/p4est-2.0/DEBUG/lib:/home/dealii/libs/trilinos-release-12-10-1/lib:/home/dealii/libs/superlu_dist_5.1.2/lib:/home/dealii/libs/arpack-ng-master/lib:/home/dealii/libs/hdf5-1.8.15-patch1/lib:/home/dealii/libs/slepc-3.6.0/lib:/home/dealii/libs/petsc-3.6.4/lib:/home/dealii/libs/parmetis-4.0.3/libmake[2]: Leaving directory '/home/dealii/shared/dealII/examples/step-1'[100%] Built target step-1make[1]: Leaving directory '/home/dealii/shared/dealII/examples/step-1'/usr/bin/cmake -E cmake_progress_start /home/dealii/shared/dealII/examples/step-1/CMakeFiles 0and I found the libraries are so huge, especially the debug lib:
root@a9f8aab1d09c:~/dealii-master/lib# ll -htotal 1.8Gdrwxr-xr-x 3 dealii dealii 4.0K Mar 15 00:15 ./drwxr-xr-x 5 dealii dealii 4.0K Mar 15 00:19 ../drwxr-xr-x 3 dealii dealii 4.0K Mar 15 00:15 cmake/lrwxrwxrwx 1 dealii dealii 25 Mar 15 00:15 libdeal_II.g.so -> libdeal_II.g.so.9.0.0-pre-rw-r--r-- 1 dealii dealii 1.6G Mar 15 00:15 libdeal_II.g.so.9.0.0-prelrwxrwxrwx 1 dealii dealii 23 Mar 15 00:15 libdeal_II.so -> libdeal_II.so.9.0.0-pre-rw-r--r-- 1 dealii dealii 172M Mar 15 00:14 libdeal_II.so.9.0.0-preI doubt if this is a good practice?
My problem: How to parse the dealii code using intellisense remotely?
I would like to compile the project using traditional way and I want to use intellisense of vs 2017 to give me more information when I am debugging.
But why a simple tutorial used so many libraries? it loads 106 libraries!
程迪
Aug 8, 2018, 11:07:28 AM8/8/18
to deal.II User Group
Hi everyone,
I just figured it out. According to https://github.com/Microsoft/VSLinux/issues/272 ,the intellisense works if CMakeSettings.json file is like this:
{
// See https://go.microsoft.com//fwlink//?linkid=834763 for more information about this file. "environments": [ { "environment": "IS_includes", // this is used for intelliSense
// ${env.USERPROFILE} == c:\Users\<userName>
// ${env.LOCALAPPDATA} == c:\Users\<userName>\AppData\Local "INCLUDE": "${env.INCLUDE};${env.USERPROFILE}\\dealII\\dealii_lib\\include;${env.LOCALAPPDATA}\\Microsoft\\Linux\\Header Cache\\1.0\\919434520\\usr\\include" } ], "configurations": [ { "name": "Linux-Debug", "generator": "Unix Makefiles", "remoteMachineName": "192.168.99.100", "configurationType": "Debug", "remoteCMakeListsRoot": "/var/tmp/src/${workspaceHash}/${name}", "cmakeExecutable": "/opt/cmake/3.12.0/bin/cmake", "buildRoot": "${env.USERPROFILE}\\CMakeBuilds\\${workspaceHash}\\build\\${name}", "installRoot": "${env.USERPROFILE}\\CMakeBuilds\\${workspaceHash}\\install\\${name}", "remoteBuildRoot": "/var/tmp/build/${workspaceHash}/build/${name}", "remoteInstallRoot": "/var/tmp/build/${workspaceHash}/install/${name}", "remoteCopySources": true, "remoteCopySourcesOutputVerbosity": "Normal", "remoteCopySourcesConcurrentCopies": "10", "remoteCopySourcesMethod": "sftp", "remoteCopyBuildOutput": true, "cmakeCommandArgs": "", "buildCommandArgs": "", "ctestCommandArgs": "", "inheritEnvironments": [ "linux_x64", "IS_includes" ] },
Jean-Paul Pelteret
Aug 8, 2018, 11:15:17 AM8/8/18
to dea...@googlegroups.com
Hi there,
I’m really happy to hear that you managed to work this out for yourself, and thanks a lot for posting your solution! I’m sure that will be very useful to our other Visual Studio users in the future.
Best,
Jean-Paul
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Wolfgang Bangerth
Aug 13, 2018, 3:38:16 PM8/13/18
to dea...@googlegroups.com
On 08/08/2018 09:07 AM, 程迪 wrote:
>
> I just figured it out. According to
> https://github.com/Microsoft/VSLinux/issues/272 ,the intellisense works
> if CMakeSettings.json file is like this:
Like Jean-Paul already said, thanks for posting this! Would you be
>
> I just figured it out. According to
> https://github.com/Microsoft/VSLinux/issues/272 ,the intellisense works
> if CMakeSettings.json file is like this:
interested in adding something to the VisualStudio part of the wiki page
here?
https://github.com/dealii/dealii/wiki/Windows
I'm sure that would be useful to others, and the wiki page seems to be
the common place where we collect Windows-specific information.
Best
W.
--
------------------------------------------------------------------------
Wolfgang Bangerth email: bang...@colostate.edu
www: http://www.math.colostate.edu/~bangerth/
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